GO241397

Overview
NameGO241397
Unique NameGO241397
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:532..1036. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.342e-34
Identity = 60/79 (75.95%), Postives = 63/79 (79.75%), Query Frame = 3
Query:  120 DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPG 356
            D LYPGG FDPLGLADDP+ FAELKVKEIKNGRLAMFS  GFFVQAIV GKGP+ NL D LADP  N A+A A  F PG
Sbjct:  174 DTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKFTPG 252          

HSP 2 Score: 43.1282 bits (100), Expect = 1.342e-34
Identity = 23/39 (58.97%), Postives = 24/39 (61.54%), Query Frame = 2
Query:    2 GNPSLIHAQSXLAXWACQVVLMGXVEGYXIAGGPLGEXD 118
            GN SLIHAQS +A  A QVVLMG  E Y   GG  G  D
Sbjct:  133 GNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLD 171          
BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.125e-34
Identity = 68/80 (85.00%), Postives = 73/80 (91.25%), Query Frame = 3
Query:  120 DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPGK 359
            D +YPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV GKGP+ NL D +ADPV NNAWA+A NFVPGK
Sbjct:  186 DKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPVANNAWAFATNFVPGK 265          
BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 3.625e-34
Identity = 66/80 (82.50%), Postives = 74/80 (92.50%), Query Frame = 3
Query:  120 DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPGK 359
            DPLYPGG+FDPLGLADDP++FAELKVKE+KNGRLAMFSMFGFFVQAIV GKGP+ NL D +ADPV NNAWA+A NFVPG+
Sbjct:  186 DPLYPGGAFDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAFATNFVPGQ 265          

HSP 2 Score: 67.0106 bits (162), Expect = 5.631e-11
Identity = 34/60 (56.67%), Postives = 38/60 (63.33%), Query Frame = 2
Query:    2 GNPSLIHAQSXLAXWACQVVLMGXVEGYXIAGGPLGEXD*PIVPRWQL*SIGFG**PGGF 181
            GNP+LIHAQS LA WA QVVLMG VEGY + GGPLGE   P+ P      +G    P  F
Sbjct:  147 GNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDSF 206          
BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 4.734e-34
Identity = 69/81 (85.19%), Postives = 71/81 (87.65%), Query Frame = 3
Query:  114 VTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPG 356
            VTDP+YPGGSFDPLGLADDP+ FAELKVKEIKNGRLAMFSMFGFFVQAIV GKGPL NL D LADPV NNAWAYA    PG
Sbjct:  187 VTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANNAWAYAPTSPPG 267          

HSP 2 Score: 74.7146 bits (182), Expect = 2.701e-13
Identity = 37/60 (61.67%), Postives = 40/60 (66.67%), Query Frame = 2
Query:    2 GNPSLIHAQSXLAXWACQVVLMGXVEGYXIAGGPLGEXD*PIVPRWQL*SIGFG**PGGF 181
            GNPSL+HAQS LA WACQVVLMG VEGY +AGGPLGE   PI P      +G    P  F
Sbjct:  150 GNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPDTF 209          
BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.683e-24
Identity = 49/79 (62.03%), Postives = 54/79 (68.35%), Query Frame = 3
Query:  120 DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADP-VNNNAWAYAXNFVP 353
            D LYPGG FDPLGLADDP+ F ELKVKEIKNGRLAM  M GF+ QAIV G+GP+ N    L DP  +N   A    F P
Sbjct:   43 DRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTALVTQFAP 121          

HSP 2 Score: 35.8094 bits (81), Expect = 1.683e-24
Identity = 21/37 (56.76%), Postives = 24/37 (64.86%), Query Frame = 2
Query:   11 SLIHAQSXLAXWACQVVLMGXVEGY---XIAGGPLGE 112
            +LIHA+S LA  A QV+LMG VEGY     A G  GE
Sbjct:    4 ALIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGE 40          
BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 7.839e-21
Identity = 48/68 (70.59%), Postives = 54/68 (79.41%), Query Frame = 3
Query:  120 DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNN 323
            D L+PGG FDPLGLA DPE  A LKVKEIKNGRLAMF+M GFF+QA V G+GP+ NLA  L+DP  NN
Sbjct:  198 DKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 265          
BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.438e-18
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 2
Query:    2 GNPSLIHAQSXLAXWACQVVLMGXVEGYXIAGGPLGE 112
            GNP+L+HAQS LA WACQVVLMG VEGY + GGPLGE
Sbjct:  146 GNPNLVHAQSILAIWACQVVLMGAVEGYRVGGGPLGE 182          

HSP 2 Score: 44.2838 bits (103), Expect = 2.438e-18
Identity = 18/21 (85.71%), Postives = 20/21 (95.24%), Query Frame = 3
Query:  120 DPLYPGGSFDPLGLADDPEAF 182
            D LYPGG+FDPLGLA+DPEAF
Sbjct:  185 DQLYPGGAFDPLGLAEDPEAF 205          
BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.642e-18
Identity = 43/69 (62.32%), Postives = 52/69 (75.36%), Query Frame = 3
Query:  120 DPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNN 323
            DP YPGG  F+PLG   D ++  ELK+KEIKNGRLAM ++ G+F+QA+V G GP  NL D LADPVNNN
Sbjct:  197 DPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 265          
BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.171e-16
Identity = 39/69 (56.52%), Postives = 51/69 (73.91%), Query Frame = 3
Query:  120 DPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNN 323
            +P YPGG F +PLG   D ++  ELK+KE+KNGRLAM ++ G+F+Q +V G GP  NL D +ADPVNNN
Sbjct:  199 NPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNN 267          
BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.814e-16
Identity = 42/66 (63.64%), Postives = 48/66 (72.73%), Query Frame = 3
Query:  129 YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVXGKGPLXNLADXLADPVNNN 323
            YPGG+FDPLG + DP  F ELK+KEIKNGRLAM +  GF V Q+   G GPL NLA  LADP +NN
Sbjct:  167 YPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 232          
The following BLAST results are available for this feature:
BLAST of GO241397 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB2_DUNTE1.342e-3475.95Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB26_PETSP2.125e-3485.00Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB215_PEA3.625e-3482.50Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB2_PHYPA4.734e-3485.19Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_EUGGR1.683e-2462.03Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB26_ARATH7.839e-2170.59Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB21_SILPR2.438e-1878.38Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB13_SOLLC3.642e-1862.32Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA1.171e-1656.52Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB121_HORVU5.814e-1663.64Chlorophyll a-b binding protein 1B-21, chloroplast... [more]

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Properties
Property NameValue
Genbank description45 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 127 5, mRNA sequence.