GO241386

Overview
NameGO241386
Unique NameGO241386
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241386 vs. ExPASy Swiss-Prot
Match: ARF_GIALA (ADP-ribosylation factor OS=Giardia lamblia PE=3 SV=3)

HSP 1 Score: 161.77 bits (408), Expect = 2.433e-39
Identity = 74/116 (63.79%), Postives = 93/116 (80.17%), Query Frame = 2
Query:    2 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD--RVVEARDELHRMLNEDELRDAVLLAFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 343
            DVGGQD IRPLWRHY+QNT  LI+V+DS D +  R+ +A++ELH +L EDELRDA LL FANKQDLP AM+  ++T++LGL  L++R WYIQ TCA SG+GLY+GLDWLS+ I  K
Sbjct:   67 DVGGQDSIRPLWRHYYQNTDALIYVIDSADLEPKRIEDAKNELHTLLGEDELRDAALLVFANKQDLPKAMSTTDLTERLGLQELKKRDWYIQPTCARSGDGLYQGLDWLSDYIFDK 182          
BLAST of GO241386 vs. ExPASy Swiss-Prot
Match: ARF4_ARATH (Probable ADP-ribosylation factor At2g15310 OS=Arabidopsis thaliana GN=At2g15310 PE=2 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 4.589e-38
Identity = 74/114 (64.91%), Postives = 91/114 (79.82%), Query Frame = 2
Query:    2 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLAFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 343
            D+GGQ+KIR LWRHYFQN QGLIFVVDS+D +R+ EAR+ELHR+L ++EL  A +L FANKQD  NA+  AE+ +KLGLHSL +R W IQ T A SG+GLYEGL+WLS  I +K
Sbjct:   67 DIGGQEKIRKLWRHYFQNAQGLIFVVDSSDSERLSEARNELHRILTDNELEGACVLVFANKQDSRNALPVAEVANKLGLHSLSKRCWLIQGTSAISGQGLYEGLEWLSTTIPNK 180          
BLAST of GO241386 vs. ExPASy Swiss-Prot
Match: ARF2_SCHPO (Probable ADP-ribosylation factor OS=Schizosaccharomyces pombe GN=SPBC1539.08 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.295e-36
Identity = 71/114 (62.28%), Postives = 87/114 (76.32%), Query Frame = 2
Query:    2 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLAFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 343
            DVGGQDKIRPLWRHYF  T+GLIFVVDS D +R+ EAR ELHR++++ E+RD +LL  ANKQDLP A++ A+ITD L L  L+ R W +Q TCA +G+GL EGL WLS N   K
Sbjct:   71 DVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLANKQDLPGALSPAQITDVLQLDKLKDRLWNVQPTCALTGDGLLEGLAWLSQNAKLK 184          
BLAST of GO241386 vs. ExPASy Swiss-Prot
Match: ARF3_ARATH (ADP-ribosylation factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 3.078e-34
Identity = 66/113 (58.41%), Postives = 84/113 (74.34%), Query Frame = 2
Query:    2 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLAFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 340
            D+GGQ  IRP WR YF NTQ +I+VVDS+D DR+  A++E H +L EDEL+ AV+L FANKQDLP A++ A +T+ L LH ++ R W I  TCA  GEGL+EGLDWLSN + S
Sbjct:   67 DLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEDELKGAVVLIFANKQDLPGALDDAAVTEALELHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNTLKS 179          
BLAST of GO241386 vs. ExPASy Swiss-Prot
Match: ARF1_BRARP (ADP-ribosylation factor 1 OS=Brassica rapa subsp. pekinensis GN=ARF1 PE=2 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 8.956e-34
Identity = 65/113 (57.52%), Postives = 84/113 (74.34%), Query Frame = 2
Query:    2 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLAFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 340
            D+GGQ  IRP WR YF NTQ +I+VVDS+D DR+  A++E H +L E+EL+ AV+L FANKQDLP A++ A +T+ L LH ++ R W I  TCA  GEGL+EGLDWLSN + S
Sbjct:   67 DLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEEELKGAVVLIFANKQDLPGALDDAAVTEALELHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNTLKS 179          
BLAST of GO241386 vs. ExPASy Swiss-Prot
Match: ARD1_MOUSE (GTP-binding protein ARD-1 OS=Mus musculus GN=Trim23 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.206e-32
Identity = 67/114 (58.77%), Postives = 84/114 (73.68%), Query Frame = 2
Query:    2 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLAFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 340
            DVGG+ K+RPLW+HY+ NTQ ++FVVDS+ RDR+ EA  EL ++L E ELRDA+LL FANKQD+  A++  EIT+ L LH L   R WYIQ   A SG GLYEGLDWLS  + +
Sbjct:  454 DVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVA 567          
BLAST of GO241386 vs. ExPASy Swiss-Prot
Match: ARD1_HUMAN (GTP-binding protein ARD-1 OS=Homo sapiens GN=TRIM23 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.206e-32
Identity = 67/114 (58.77%), Postives = 84/114 (73.68%), Query Frame = 2
Query:    2 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLAFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 340
            DVGG+ K+RPLW+HY+ NTQ ++FVVDS+ RDR+ EA  EL ++L E ELRDA+LL FANKQD+  A++  EIT+ L LH L   R WYIQ   A SG GLYEGLDWLS  + +
Sbjct:  454 DVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVA 567          
BLAST of GO241386 vs. ExPASy Swiss-Prot
Match: ARFJ_DICDI (ADP-ribosylation factor J OS=Dictyostelium discoideum GN=arrJ PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.868e-31
Identity = 58/114 (50.88%), Postives = 84/114 (73.68%), Query Frame = 2
Query:    2 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLAFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 343
            DVGGQ KIRPLW+HY+  +  +IFVVDS DR+R+ E ++E+  +L +DEL+   +L FANKQD+ NAMN AEI + L L+S++ R WY+Q   A   +G+YEG DW++N++ +K
Sbjct:   75 DVGGQHKIRPLWKHYYHGSNAVIFVVDSTDRERMDEVKEEIDNLLIQDELKGTQILVFANKQDMNNAMNTAEIVNSLDLNSIKDRKWYVQPCSAIRSDGIYEGFDWVANSLNNK 188          
BLAST of GO241386 vs. ExPASy Swiss-Prot
Match: ARD1_RAT (GTP-binding protein ARD-1 (Fragment) OS=Rattus norvegicus GN=Trim23 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.868e-31
Identity = 66/114 (57.89%), Postives = 83/114 (72.81%), Query Frame = 2
Query:    2 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLAFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 340
            DVG + K+RPLW+HY+ NTQ ++FVVDS+ RDR+ EA  EL ++L E ELRDA+LL FANKQD+  A++  EIT+ L LH L   R WYIQ   A SG GLYEGLDWLS  + +
Sbjct:  434 DVGEKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVA 547          
BLAST of GO241386 vs. ExPASy Swiss-Prot
Match: ARFK_DICDI (ADP-ribosylation factor K OS=Dictyostelium discoideum GN=arrK PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.065e-30
Identity = 57/114 (50.00%), Postives = 82/114 (71.93%), Query Frame = 2
Query:    2 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLAFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 343
            DVGGQ KIR LW+HY+  T  +IFVVDS DR+R+ E ++E+  +L +DEL+   +L  ANKQD+ NAMN AEI + L L+S++ R WY+Q   A   +G+YEG DW++N++ +K
Sbjct:   75 DVGGQHKIRALWKHYYHGTNAIIFVVDSTDRERMDEVKEEIDNLLIQDELKGIQILVLANKQDMNNAMNTAEIVNSLNLNSIKDRKWYVQPCSAIRSDGIYEGFDWVANSLNNK 188          
The following BLAST results are available for this feature:
BLAST of GO241386 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
ARF_GIALA2.433e-3963.79ADP-ribosylation factor OS=Giardia lamblia PE=3 SV... [more]
ARF4_ARATH4.589e-3864.91Probable ADP-ribosylation factor At2g15310 OS=Arab... [more]
ARF2_SCHPO4.295e-3662.28Probable ADP-ribosylation factor OS=Schizosaccharo... [more]
ARF3_ARATH3.078e-3458.41ADP-ribosylation factor 3 OS=Arabidopsis thaliana ... [more]
ARF1_BRARP8.956e-3457.52ADP-ribosylation factor 1 OS=Brassica rapa subsp. ... [more]
ARD1_MOUSE2.206e-3258.77GTP-binding protein ARD-1 OS=Mus musculus GN=Trim2... [more]
ARD1_HUMAN2.206e-3258.77GTP-binding protein ARD-1 OS=Homo sapiens GN=TRIM2... [more]
ARFJ_DICDI1.868e-3150.88ADP-ribosylation factor J OS=Dictyostelium discoid... [more]
ARD1_RAT1.868e-3157.89GTP-binding protein ARD-1 (Fragment) OS=Rattus nor... [more]
ARFK_DICDI2.065e-3050.00ADP-ribosylation factor K OS=Dictyostelium discoid... [more]

Pages

back to top
Properties
Property NameValue
Genbank description34 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 116 5, mRNA sequence.