GO241368

Overview
NameGO241368
Unique NameGO241368
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
GO241368_ssr239 microsatellite GO241368_ssr239:239..250. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10455 contig Csv1_Contig10455:689..1130. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER1_SYNP2 (Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=petF PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.633e-15
Identity = 37/66 (56.06%), Postives = 45/66 (68.18%), Query Frame = 2
Query:    2 AGIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEMF 199
            AG DLP SCRAG+CSTCA              F +DDQI+AGYV  C+AYP SDVT+ET K+EE++
Sbjct:   32 AGYDLPASCRAGACSTCAGKIVSGTVDQSEQSFLDDDQIEAGYVLTCIAYPQSDVTIETNKEEELY 97          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER1_MESCR (Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.633e-15
Identity = 38/65 (58.46%), Postives = 44/65 (67.69%), Query Frame = 2
Query:    2 AGIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEM 196
            AGIDLPYSCRAGSCS+CA              F +DDQI  G+V  CVAYPT DVT+ET K+EE+
Sbjct:   82 AGIDLPYSCRAGSCSSCAGKVTSGSVNQDDGSFLDDDQIKEGWVLTCVAYPTGDVTIETHKEEEL 146          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER_SPIPL (Ferredoxin OS=Spirulina platensis PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 2.133e-15
Identity = 36/66 (54.55%), Postives = 46/66 (69.70%), Query Frame = 2
Query:    2 AGIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEMF 199
            AG+DLPYSCRAG+CSTCA              F +DDQI+AGYV  CVAYPTSD T++T ++E ++
Sbjct:   34 AGLDLPYSCRAGACSTCAGTITSGTIDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIKTHQEEGLY 99          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER1_SPIOL (Ferredoxin-1, chloroplastic OS=Spinacia oleracea GN=PETF PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 2.786e-15
Identity = 37/64 (57.81%), Postives = 43/64 (67.19%), Query Frame = 2
Query:    5 GIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEM 196
            GIDLPYSCRAGSCS+CA              F +DDQID G+V  C AYP SDVT+ET K+EE+
Sbjct:   82 GIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAYPVSDVTIETHKEEEL 145          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER1_NOSMU (Ferredoxin-1 OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 2.786e-15
Identity = 35/65 (53.85%), Postives = 45/65 (69.23%), Query Frame = 2
Query:    5 GIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEMF 199
            G+DLPYSCRAG+CSTCA              F +DDQI+ GYV  CVAYPTSD+ +ET K+E+++
Sbjct:   35 GLDLPYSCRAGACSTCAGKIVSGTVDQSDQSFLDDDQIEKGYVLTCVAYPTSDLKIETHKEEDLY 99          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER_SILPR (Ferredoxin, chloroplastic OS=Silene pratensis GN=PETF PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.639e-15
Identity = 36/64 (56.25%), Postives = 45/64 (70.31%), Query Frame = 2
Query:    5 GIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEM 196
            GIDLPYSCRAGSCS+CA              F +DDQI+AG+V  C AYP++DVT+ET K+EE+
Sbjct:   81 GIDLPYSCRAGSCSSCAGKVVAGSVDQSDQSFLDDDQIEAGWVLTCAAYPSADVTIETHKEEEL 144          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER_NOSMU (Ferredoxin OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 3.639e-15
Identity = 35/65 (53.85%), Postives = 45/65 (69.23%), Query Frame = 2
Query:    5 GIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEMF 199
            G DLP+SCRAG+CSTCA              F +DDQI+AGYV  CVAYPTSDV ++T K+E+++
Sbjct:   35 GYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDLY 99          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER3_RAPSA (Ferredoxin, leaf L-A OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.639e-15
Identity = 37/65 (56.92%), Postives = 44/65 (67.69%), Query Frame = 2
Query:    2 AGIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEM 196
            AGIDLPYSCRAGSCS+CA              F +DDQI  G+V  C AYPTSDVT+ET ++E+M
Sbjct:   31 AGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDDQIAEGFVLTCAAYPTSDVTIETHREEDM 95          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER1_PHYES (Ferredoxin-1 OS=Phytolacca esculenta PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.639e-15
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 2
Query:    2 AGIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEM 196
            AG+DLPYSCRAGSCS+CA              F +DDQI+AG+V  CVAYP  DVT+ET K+E++
Sbjct:   31 AGLDLPYSCRAGSCSSCAGKVTAGTVDQEDQSFLDDDQIEAGFVLTCVAYPKGDVTIETHKEEDI 95          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER1_PEA (Ferredoxin-1, chloroplastic OS=Pisum sativum GN=PETF PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 3.639e-15
Identity = 36/64 (56.25%), Postives = 45/64 (70.31%), Query Frame = 2
Query:    5 GIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEM 196
            GIDLPYSCRAGSCS+CA              F +D+QI+AG+V  CVAYPTSDV +ET K+E++
Sbjct:   84 GIDLPYSCRAGSCSSCAGKVVGGEVDQSDGSFLDDEQIEAGFVLTCVAYPTSDVVIETHKEEDL 147          
The following BLAST results are available for this feature:
BLAST of GO241368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
FER1_SYNP21.633e-1556.06Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 272... [more]
FER1_MESCR1.633e-1558.46Ferredoxin-1, chloroplastic OS=Mesembryanthemum cr... [more]
FER_SPIPL2.133e-1554.55Ferredoxin OS=Spirulina platensis PE=1 SV=2[more]
FER1_SPIOL2.786e-1557.81Ferredoxin-1, chloroplastic OS=Spinacia oleracea G... [more]
FER1_NOSMU2.786e-1553.85Ferredoxin-1 OS=Nostoc muscorum PE=1 SV=2[more]
FER_SILPR3.639e-1556.25Ferredoxin, chloroplastic OS=Silene pratensis GN=P... [more]
FER_NOSMU3.639e-1553.85Ferredoxin OS=Nostoc muscorum PE=1 SV=2[more]
FER3_RAPSA3.639e-1556.92Ferredoxin, leaf L-A OS=Raphanus sativus PE=1 SV=1[more]
FER1_PHYES3.639e-1555.38Ferredoxin-1 OS=Phytolacca esculenta PE=1 SV=1[more]
FER1_PEA3.639e-1556.25Ferredoxin-1, chloroplastic OS=Pisum sativum GN=PE... [more]

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Properties
Property NameValue
Genbank description14 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 30 5, mRNA sequence.