GO241368

Overview
NameGO241368
Unique NameGO241368
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
GO241368_ssr239 microsatellite GO241368_ssr239:239..250. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10455 contig Csv1_Contig10455:689..1130. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER1_ANASP (Ferredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=petF PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 3.639e-15
Identity = 35/65 (53.85%), Postives = 45/65 (69.23%), Query Frame = 2
Query:    5 GIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEMF 199
            G DLP+SCRAG+CSTCA              F +DDQI+AGYV  CVAYPTSDV ++T K+E+++
Sbjct:   35 GYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDLY 99          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER1_ANASO (Ferredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=petF PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 3.639e-15
Identity = 35/65 (53.85%), Postives = 45/65 (69.23%), Query Frame = 2
Query:    5 GIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEMF 199
            G DLP+SCRAG+CSTCA              F +DDQI+AGYV  CVAYPTSDV ++T K+E+++
Sbjct:   35 GYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDLY 99          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER_SYNP4 (Ferredoxin OS=Synechococcus sp. (strain PCC 7418) PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 6.207e-15
Identity = 36/65 (55.38%), Postives = 44/65 (67.69%), Query Frame = 2
Query:    5 GIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEMF 199
            GIDLPYSCRAG+CSTCA              F +DDQI+AGYV  CVAYP SD T+ T ++EE++
Sbjct:   35 GIDLPYSCRAGACSTCAGKIKEGEIDQSDQSFLDDDQIEAGYVLTCVAYPASDCTIITHQEEELY 99          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FERB_ALOMA (Ferredoxin-B OS=Alocasia macrorrhiza PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 6.207e-15
Identity = 37/64 (57.81%), Postives = 43/64 (67.19%), Query Frame = 2
Query:    5 GIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEM 196
            GIDLPYSCRAGSCS+CA              F +DDQI  G+V  CVAYPTSDV +ET K+EE+
Sbjct:   33 GIDLPYSCRAGSCSSCAGKVKNGNVDQSDGSFLDDDQIGEGWVLTCVAYPTSDVVIETHKEEEL 96          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER1_PLEBO (Ferredoxin-1 OS=Plectonema boryanum GN=petF1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 6.207e-15
Identity = 36/65 (55.38%), Postives = 44/65 (67.69%), Query Frame = 2
Query:    5 GIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEMF 199
            GIDLPYSCRAG+CSTCA              F +DDQI AGYV  CVAYPTSD T+ T ++E+++
Sbjct:   35 GIDLPYSCRAGACSTCAGKITAGTVDQSDQSFLDDDQIQAGYVLTCVAYPTSDCTILTHQEEDLY 99          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER2_PHYAM (Ferredoxin-2 OS=Phytolacca americana PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.059e-14
Identity = 34/65 (52.31%), Postives = 47/65 (72.31%), Query Frame = 2
Query:    2 AGIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEM 196
            +G+DLPYSCRAG+CS+CA              F E++Q++AG+V  CVAYPTSDVT+ET K+E++
Sbjct:   32 SGLDLPYSCRAGACSSCAGKVTAGAVNQEDGSFLEEEQMEAGWVLTCVAYPTSDVTIETHKEEDL 96          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER2_ARATH (Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana GN=FD2 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.059e-14
Identity = 36/65 (55.38%), Postives = 44/65 (67.69%), Query Frame = 2
Query:    2 AGIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEM 196
            AGIDLPYSCRAGSCS+CA              F +D+QI  G+V  C AYPTSDVT+ET K+E++
Sbjct:   83 AGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQIGEGFVLTCAAYPTSDVTIETHKEEDI 147          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER_ARCLA (Ferredoxin OS=Arctium lappa PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.383e-14
Identity = 35/62 (56.45%), Postives = 44/62 (70.97%), Query Frame = 2
Query:   11 DLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEM 196
            DLPYSCRAGSCS+CA              + +DDQ++AG+V  CVAYPTSDVT+ET K+EE+
Sbjct:   34 DLPYSCRAGSCSSCAGKVTAGSVDQSDGSYLDDDQMEAGWVLTCVAYPTSDVTIETHKEEEL 95          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER_APHSA (Ferredoxin-1 OS=Aphanothece sacrum PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.383e-14
Identity = 34/65 (52.31%), Postives = 42/65 (64.62%), Query Frame = 2
Query:    5 GIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEMF 199
            G+DLPYSCRAG+CSTCA              F +DDQI AGY+  CVAYPT D  +ET K+E ++
Sbjct:   33 GLDLPYSCRAGACSTCAGKLVSGPAPDEDQSFLDDDQIQAGYILTCVAYPTGDCVIETHKEEALY 97          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER_SCEQU (Ferredoxin OS=Scenedesmus quadricauda PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.806e-14
Identity = 34/66 (51.52%), Postives = 44/66 (66.67%), Query Frame = 2
Query:    2 AGIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEMF 199
            AG+DLPYSCRAG+CS+CA              F +D Q+D G+V  CVAYPTSD T+ T K+E++F
Sbjct:   31 AGLDLPYSCRAGACSSCAGKVEAGTVDQSDQSFLDDSQMDGGFVLTCVAYPTSDCTIATHKEEDLF 96          
The following BLAST results are available for this feature:
BLAST of GO241368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
FER1_ANASP3.639e-1553.85Ferredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=... [more]
FER1_ANASO3.639e-1553.85Ferredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=... [more]
FER_SYNP46.207e-1555.38Ferredoxin OS=Synechococcus sp. (strain PCC 7418) ... [more]
FERB_ALOMA6.207e-1557.81Ferredoxin-B OS=Alocasia macrorrhiza PE=1 SV=1[more]
FER1_PLEBO6.207e-1555.38Ferredoxin-1 OS=Plectonema boryanum GN=petF1 PE=3 ... [more]
FER2_PHYAM1.059e-1452.31Ferredoxin-2 OS=Phytolacca americana PE=1 SV=1[more]
FER2_ARATH1.059e-1455.38Ferredoxin-2, chloroplastic OS=Arabidopsis thalian... [more]
FER_ARCLA1.383e-1456.45Ferredoxin OS=Arctium lappa PE=1 SV=1[more]
FER_APHSA1.383e-1452.31Ferredoxin-1 OS=Aphanothece sacrum PE=1 SV=2[more]
FER_SCEQU1.806e-1451.52Ferredoxin OS=Scenedesmus quadricauda PE=1 SV=1[more]

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Properties
Property NameValue
Genbank description14 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 30 5, mRNA sequence.