GO241368

Overview
NameGO241368
Unique NameGO241368
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
GO241368_ssr239 microsatellite GO241368_ssr239:239..250. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10455 contig Csv1_Contig10455:689..1130. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER5_MAIZE (Ferredoxin-5, chloroplastic OS=Zea mays GN=FDX5 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.406e-13
Identity = 33/64 (51.56%), Postives = 42/64 (65.62%), Query Frame = 2
Query:    5 GIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEM 196
            GIDLPYSCRAGSCS+CA              F +D Q+  G+V  CVAYPTSDV +ET K++++
Sbjct:   70 GIDLPYSCRAGSCSSCAGKVVSGSLDQSDQSFLDDSQVADGWVLTCVAYPTSDVVIETHKEDDL 133          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER_THAWE (Ferredoxin OS=Thalassiosira weissflogii GN=petF PE=3 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 4.448e-13
Identity = 32/66 (48.48%), Postives = 43/66 (65.15%), Query Frame = 2
Query:    2 AGIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEMF 199
            AGIDLPYSCRAG+CSTCA              F +DDQ+ AG+V  C+AYP SD T+   +++E++
Sbjct:   34 AGIDLPYSCRAGACSTCAGKVTEGTIDQSEQTFLDDDQMGAGFVLTCIAYPKSDCTILVHQEDELY 99          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER_DATAR (Ferredoxin OS=Datura arborea PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.448e-13
Identity = 34/64 (53.12%), Postives = 42/64 (65.62%), Query Frame = 2
Query:    5 GIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEM 196
            G +LPYSCRAGSCS+CA              F +DDQ+  G+V  CVAYP SDVT+ET K+EE+
Sbjct:   32 GHELPYSCRAGSCSSCAGKVTAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER_ATRBE (Ferredoxin OS=Atropa belladonna PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.448e-13
Identity = 34/64 (53.12%), Postives = 42/64 (65.62%), Query Frame = 2
Query:    5 GIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEM 196
            G +LPYSCRAGSCS+CA              F +DDQ+  G+V  CVAYP SDVT+ET K+EE+
Sbjct:   32 GHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER1_ORYSJ (Ferredoxin-1, chloroplastic OS=Oryza sativa subsp. japonica GN=ADI1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.448e-13
Identity = 33/64 (51.56%), Postives = 42/64 (65.62%), Query Frame = 2
Query:    5 GIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEM 196
            GIDLPYSCRAGSCS+CA              F +DDQ+ AG+V  C AYP SDV +ET K++++
Sbjct:   75 GIDLPYSCRAGSCSSCAGKVVSGEIDQSDQSFLDDDQVAAGWVLTCHAYPKSDVVIETHKEDDL 138          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER1_ORYSI (Ferredoxin-1, chloroplastic OS=Oryza sativa subsp. indica GN=ADI1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.448e-13
Identity = 33/64 (51.56%), Postives = 42/64 (65.62%), Query Frame = 2
Query:    5 GIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEM 196
            GIDLPYSCRAGSCS+CA              F +DDQ+ AG+V  C AYP SDV +ET K++++
Sbjct:   75 GIDLPYSCRAGSCSSCAGKVVSGEIDQSDQSFLDDDQVAAGWVLTCHAYPKSDVVIETHKEDDL 138          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER1_HYONI (Ferredoxin-1 OS=Hyoscyamus niger PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.448e-13
Identity = 34/64 (53.12%), Postives = 42/64 (65.62%), Query Frame = 2
Query:    5 GIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEM 196
            G +LPYSCRAGSCS+CA              F +DDQI  G+V  CVAYP SDVT+ET K+E++
Sbjct:   32 GHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQIADGFVLTCVAYPQSDVTIETHKEEDL 95          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER1_SOLLC (Ferredoxin-1, chloroplastic OS=Solanum lycopersicum GN=SEND33 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 7.587e-13
Identity = 34/64 (53.12%), Postives = 41/64 (64.06%), Query Frame = 2
Query:    5 GIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEM 196
            G DLPYSCRAGSCS+CA              F ++DQ  AG+V  CVAYP  DVT+ET K+EE+
Sbjct:   79 GHDLPYSCRAGSCSSCAGKVTAGSVDQSDGNFLDEDQEAAGFVLTCVAYPKGDVTIETHKEEEL 142          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER_SOLNI (Ferredoxin OS=Solanum nigrum PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 9.909e-13
Identity = 33/64 (51.56%), Postives = 42/64 (65.62%), Query Frame = 2
Query:    5 GIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEM 196
            G +LPYSCRAGSCS+CA              F +DDQ+  G+V  CVAYP SDVT+ET K+E++
Sbjct:   32 GHELPYSCRAGSCSSCAGKVTAGTVDQSDGNFLDDDQMADGFVLTCVAYPKSDVTIETHKEEDL 95          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER_LYCCN (Ferredoxin OS=Lycium chinense PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 9.909e-13
Identity = 34/64 (53.12%), Postives = 41/64 (64.06%), Query Frame = 2
Query:    5 GIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEM 196
            G +LPYSCRAGSCS+CA              F +DDQI  G+V  CVAYP SDVT+ET K+E +
Sbjct:   32 GHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQIADGFVLTCVAYPQSDVTIETHKEEAL 95          
The following BLAST results are available for this feature:
BLAST of GO241368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
FER5_MAIZE3.406e-1351.56Ferredoxin-5, chloroplastic OS=Zea mays GN=FDX5 PE... [more]
FER_THAWE4.448e-1348.48Ferredoxin OS=Thalassiosira weissflogii GN=petF PE... [more]
FER_DATAR4.448e-1353.13Ferredoxin OS=Datura arborea PE=1 SV=1[more]
FER_ATRBE4.448e-1353.13Ferredoxin OS=Atropa belladonna PE=1 SV=1[more]
FER1_ORYSJ4.448e-1351.56Ferredoxin-1, chloroplastic OS=Oryza sativa subsp.... [more]
FER1_ORYSI4.448e-1351.56Ferredoxin-1, chloroplastic OS=Oryza sativa subsp.... [more]
FER1_HYONI4.448e-1353.13Ferredoxin-1 OS=Hyoscyamus niger PE=1 SV=1[more]
FER1_SOLLC7.587e-1353.13Ferredoxin-1, chloroplastic OS=Solanum lycopersicu... [more]
FER_SOLNI9.909e-1351.56Ferredoxin OS=Solanum nigrum PE=1 SV=1[more]
FER_LYCCN9.909e-1353.13Ferredoxin OS=Lycium chinense PE=1 SV=1[more]

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Properties
Property NameValue
Genbank description14 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 30 5, mRNA sequence.