GO241368

Overview
NameGO241368
Unique NameGO241368
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER_SYNEN (Ferredoxin-1 OS=Synechococcus elongatus naegeli GN=petF1 PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 2.208e-12
Identity = 31/65 (47.69%), Postives = 42/65 (64.62%), Query Frame = 2
Query:    5 GIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEMF 199
            G+DLP+SCRAG+CSTCA              F +DDQI+ G+V  CVAYP SD  + T ++EE++
Sbjct:   34 GLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEELY 98          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER_SCOJA (Ferredoxin OS=Scopolia japonica PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.208e-12
Identity = 33/64 (51.56%), Postives = 41/64 (64.06%), Query Frame = 2
Query:    5 GIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEM 196
            G +LPYSCRAGSCS+CA              F +DDQ+  G+V  CVAYP SDV +ET K+EE+
Sbjct:   32 GHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVIIETHKEEEL 95          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER_CHLRE (Ferredoxin, chloroplastic OS=Chlamydomonas reinhardtii GN=PETF PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 2.208e-12
Identity = 31/66 (46.97%), Postives = 43/66 (65.15%), Query Frame = 2
Query:    2 AGIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEMF 199
            AG+DLPYSCRAG+CS+CA              F +D Q+  G+V  CVAYPTSD T++T ++E ++
Sbjct:   61 AGLDLPYSCRAGACSSCAGKVAAGTVDQSDQSFLDDAQMGNGFVLTCVAYPTSDCTIQTHQEEALY 126          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER2_CYACA (Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.208e-12
Identity = 29/65 (44.62%), Postives = 43/65 (66.15%), Query Frame = 2
Query:    5 GIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEMF 199
            G+DLPYSCRAG+CSTCA              F +++QI+ G++  CVAYPTSD  ++T ++E ++
Sbjct:   33 GVDLPYSCRAGACSTCAGKLVKGSVDQSDQSFLDEEQINNGFILTCVAYPTSDCVIQTHQEEALY 97          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER1_CYACA (Ferredoxin OS=Cyanidium caldarium GN=petF PE=3 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 2.208e-12
Identity = 32/65 (49.23%), Postives = 42/65 (64.62%), Query Frame = 2
Query:    5 GIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEMF 199
            GIDLPYSCRAG+CSTCA              F +D+QI  G+V  CVAYPTS+ T+ T ++E ++
Sbjct:   35 GIDLPYSCRAGACSTCAGKLISGTVDQSDQSFLDDEQIKEGFVLTCVAYPTSNCTILTHQEEALY 99          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER_SOLLY (Ferredoxin OS=Solanum lyratum PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.883e-12
Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 2
Query:    5 GIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEM 196
            G DLPYSCRAG+CS+CA              F +DDQ+  G+V  CVAYP S+VT+ET K++++
Sbjct:   32 GHDLPYSCRAGACSSCAGKITAGNVDQSDNSFLDDDQVAEGFVLTCVAYPKSNVTIETHKEDDL 95          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER_GLEJA (Ferredoxin OS=Gleichenia japonica PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.883e-12
Identity = 30/65 (46.15%), Postives = 41/65 (63.08%), Query Frame = 2
Query:    2 AGIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEM 196
            AG+DLPYSCRAG+CS+C               F +DDQ+  G+V  CVAYP  D+T+ET  +E++
Sbjct:   31 AGLDLPYSCRAGACSSCTGKLLDGRVDQSEQSFLDDDQMAEGFVLTCVAYPAGDITIETHAEEKL 95          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER_PHYPA (Ferredoxin, chloroplastic OS=Physcomitrella patens GN=PETF PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.766e-12
Identity = 32/65 (49.23%), Postives = 40/65 (61.54%), Query Frame = 2
Query:    2 AGIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEM 196
            AG+DLPYSCRAG+CS+CA              F +D QID G+V  CVAYP SD  + T ++E M
Sbjct:   81 AGMDLPYSCRAGACSSCAGIIKAGEVDQSDQSFLDDSQIDDGFVLTCVAYPASDCIIXTHQEENM 145          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER_EUGVI (Ferredoxin OS=Euglena viridis PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.766e-12
Identity = 30/66 (45.45%), Postives = 41/66 (62.12%), Query Frame = 2
Query:    2 AGIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEMF 199
            AGIDLPYSCRAG+CS+C               F +DDQ+  G+   C  YPTS+ T+ET K++++F
Sbjct:   31 AGIDLPYSCRAGACSSCTGIVKEGTVDQSDQSFLDDDQMAKGFCLTCTTYPTSNCTIETHKEDDLF 96          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER_PORPU (Ferredoxin OS=Porphyra purpurea GN=petF PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 4.918e-12
Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 2
Query:    2 AGIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEMF 199
            AGI+LPYSCRAG+CSTCA              F +D+Q+  GYV  C+AYP SD T+ T  ++E++
Sbjct:   34 AGIELPYSCRAGACSTCAGKVTEGSVDQSDQSFLDDEQLLKGYVLTCIAYPESDCTILTHVEQELY 99          
The following BLAST results are available for this feature:
BLAST of GO241368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
FER_SYNEN2.208e-1247.69Ferredoxin-1 OS=Synechococcus elongatus naegeli GN... [more]
FER_SCOJA2.208e-1251.56Ferredoxin OS=Scopolia japonica PE=1 SV=1[more]
FER_CHLRE2.208e-1246.97Ferredoxin, chloroplastic OS=Chlamydomonas reinhar... [more]
FER2_CYACA2.208e-1244.62Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=... [more]
FER1_CYACA2.208e-1249.23Ferredoxin OS=Cyanidium caldarium GN=petF PE=3 SV=... [more]
FER_SOLLY2.883e-1248.44Ferredoxin OS=Solanum lyratum PE=1 SV=1[more]
FER_GLEJA2.883e-1246.15Ferredoxin OS=Gleichenia japonica PE=1 SV=1[more]
FER_PHYPA3.766e-1249.23Ferredoxin, chloroplastic OS=Physcomitrella patens... [more]
FER_EUGVI3.766e-1245.45Ferredoxin OS=Euglena viridis PE=1 SV=1[more]
FER_PORPU4.918e-1246.97Ferredoxin OS=Porphyra purpurea GN=petF PE=3 SV=2[more]

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Properties
Property NameValue
Genbank description14 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 30 5, mRNA sequence.