GO241368

Overview
NameGO241368
Unique NameGO241368
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
GO241368_ssr239 microsatellite GO241368_ssr239:239..250. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10455 contig Csv1_Contig10455:689..1130. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER2_DUNSA (Ferredoxin-2 OS=Dunaliella salina PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.423e-12
Identity = 31/66 (46.97%), Postives = 41/66 (62.12%), Query Frame = 2
Query:    2 AGIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEMF 199
            AG+DLPYSCRAG+CS+CA              F +DDQ   G+V  CVAY TSD T+ T ++E ++
Sbjct:   30 AGLDLPYSCRAGACSSCAGKVEAGTIDQSDQSFLDDDQQGRGFVLTCVAYATSDCTISTHQEESLY 95          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER_CHLFU (Ferredoxin OS=Chlorella fusca PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 8.389e-12
Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 2
Query:    2 AGIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEMF 199
            AG+DLPYSCRAG+CS+CA              F +D Q+  G+V  CVAYPTSDVT+ T ++  ++
Sbjct:   29 AGLDLPYSCRAGACSSCAGKVESGEVDQSDQSFLDDAQMGKGFVLTCVAYPTSDVTILTHQEAALY 94          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER_PORUM (Ferredoxin OS=Porphyra umbilicalis GN=PETF PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.869e-11
Identity = 30/65 (46.15%), Postives = 41/65 (63.08%), Query Frame = 2
Query:    5 GIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEMF 199
            GI+LPYSCRAG+CSTCA              F +D+Q+  GYV  C+AYP SD T+ T  ++E++
Sbjct:   34 GIELPYSCRAGACSTCAGKVTEGTVDQSDQSFLDDEQMLKGYVLTCIAYPESDCTILTHVEQELY 98          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER_PERBI (Ferredoxin OS=Peridinium bipes PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.441e-11
Identity = 31/64 (48.44%), Postives = 39/64 (60.94%), Query Frame = 2
Query:    5 GIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEM 196
            G++LPYSCRAGSCS+CA              F +DDQ   GY   CV YPTSDVT++T  + E+
Sbjct:   30 GLELPYSCRAGSCSSCAGKVLTGSIDQSDQAFLDDDQGGDGYCLTCVTYPTSDVTIKTHCESEL 93          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER1_EQUTE (Ferredoxin-1 OS=Equisetum telmateia PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.441e-11
Identity = 29/66 (43.94%), Postives = 41/66 (62.12%), Query Frame = 2
Query:    2 AGIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEMF 199
            AG DLP+SCRAG+CS+C               F +D Q++ G+V  C+A P SD+ +ET K+EE+F
Sbjct:   30 AGYDLPFSCRAGACSSCLGKVVSGSVDQSEGSFLDDGQMEEGFVLTCIAIPESDLVIETHKEEELF 95          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER1_EQUAR (Ferredoxin-1 OS=Equisetum arvense PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.441e-11
Identity = 29/66 (43.94%), Postives = 41/66 (62.12%), Query Frame = 2
Query:    2 AGIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEMF 199
            AG DLP+SCRAG+CS+C               F +D Q++ G+V  C+A P SD+ +ET K+EE+F
Sbjct:   30 AGYDLPFSCRAGACSSCLGKVVSGSVDESEGSFLDDGQMEEGFVLTCIAIPESDLVIETHKEEELF 95          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER3_MAIZE (Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.188e-11
Identity = 29/66 (43.94%), Postives = 40/66 (60.61%), Query Frame = 2
Query:    2 AGIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEMF 199
            AG++LPYSCRAG+CSTCA              F +D Q + GYV  CV+YP SD  + T K+ +++
Sbjct:   87 AGVELPYSCRAGACSTCAGKIESGSVDQSDGSFLDDGQQEEGYVLTCVSYPKSDCVIHTHKEGDLY 152          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER6_MAIZE (Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.163e-11
Identity = 27/66 (40.91%), Postives = 41/66 (62.12%), Query Frame = 2
Query:    2 AGIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEMF 199
            AG++LP+SCRAGSCSTCA              F +D Q+  GY+  C++YP +D  + T K+E+++
Sbjct:   90 AGVELPFSCRAGSCSTCAGRMSAGEVDQSEGSFLDDGQMAEGYLLTCISYPKADCVIHTHKEEDLY 155          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER2_APHSA (Ferredoxin-2 OS=Aphanothece sacrum PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 5.437e-11
Identity = 33/66 (50.00%), Postives = 41/66 (62.12%), Query Frame = 2
Query:    2 AGIDLPYSCRAGSCSTCAXXXXXXXXXXXXXX-FXEDDQIDAGYVXXCVAYPTSDVTVETPKDEEM 196
            AG+DLP SCRAGSCSTCA               F +DDQ+ AG+V  CVAYPT D T+ T ++ E+
Sbjct:   34 AGLDLPSSCRAGSCSTCAGKLVSGAAPNQDDQAFLDDDQLAAGWVMTCVAYPTGDCTIMTHQESEV 99          
BLAST of GO241368 vs. ExPASy Swiss-Prot
Match: FER2_NOSMU (Ferredoxin-2 OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 7.102e-11
Identity = 30/63 (47.62%), Postives = 40/63 (63.49%), Query Frame = 2
Query:    2 AGIDLPYSCRAGSCSTCAXXXXXXXXXXXXXXFXEDDQIDAGYVXXCVAYPTSDVTVETPKDE 190
            AG+DLP+SCR+GSCS+C               F +DDQI AG V  CVAYPTS+  +ET +++
Sbjct:   34 AGLDLPFSCRSGSCSSCNGILKKGTVDQSDQNFLDDDQIAAGNVLTCVAYPTSNCEIETHRED 96          
The following BLAST results are available for this feature:
BLAST of GO241368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
FER2_DUNSA6.423e-1246.97Ferredoxin-2 OS=Dunaliella salina PE=1 SV=1[more]
FER_CHLFU8.389e-1246.97Ferredoxin OS=Chlorella fusca PE=1 SV=1[more]
FER_PORUM1.869e-1146.15Ferredoxin OS=Porphyra umbilicalis GN=PETF PE=1 SV... [more]
FER_PERBI2.441e-1148.44Ferredoxin OS=Peridinium bipes PE=1 SV=1[more]
FER1_EQUTE2.441e-1143.94Ferredoxin-1 OS=Equisetum telmateia PE=1 SV=1[more]
FER1_EQUAR2.441e-1143.94Ferredoxin-1 OS=Equisetum arvense PE=1 SV=1[more]
FER3_MAIZE3.188e-1143.94Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE... [more]
FER6_MAIZE4.163e-1140.91Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE... [more]
FER2_APHSA5.437e-1150.00Ferredoxin-2 OS=Aphanothece sacrum PE=1 SV=2[more]
FER2_NOSMU7.102e-1147.62Ferredoxin-2 OS=Nostoc muscorum PE=1 SV=2[more]

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Properties
Property NameValue
Genbank description14 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 30 5, mRNA sequence.