GE213472

Overview
NameGE213472
Unique NameGE213472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213472 vs. ExPASy Swiss-Prot
Match: PROFA_ORYSJ (Profilin-A OS=Oryza sativa subsp. japonica GN=Os10g0323600 PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.985e-60
Identity = 103/131 (78.63%), Postives = 120/131 (91.60%), Query Frame = 2
Query:  167 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 559
            MSWQ YVD+HL+CEIEG+HL++AAI+GHDG+VWAQS  FPQ KPEE+T IM DF+EPG LAPTGL+LG TKYMVIQGEPGAVIRGKKG GG+T+KKT  AL++GIYDEPMTPGQCNM+VERLGDYL++QGL
Sbjct:    1 MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFDEPGFLAPTGLFLGPTKYMVIQGEPGAVIRGKKGSGGITVKKTGQALVVGIYDEPMTPGQCNMVVERLGDYLVEQGL 131          
BLAST of GE213472 vs. ExPASy Swiss-Prot
Match: PROF6_HEVBR (Profilin-6 OS=Hevea brasiliensis PE=1 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 5.205e-60
Identity = 104/131 (79.39%), Postives = 120/131 (91.60%), Query Frame = 2
Query:  167 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 559
            MSWQ YVDDHL+C+I+G+ L+AAAIIGHDGSVWAQS +FPQ K +E+  +M DF+EPG+LAPTGL+LGGTKYMVIQGEPGAVIRGKKG GG+T+KKT  ALIIGIYDEP+TPGQCNMIVERLGDYL+DQGL
Sbjct:    1 MSWQTYVDDHLMCDIDGHRLTAAAIIGHDGSVWAQSSSFPQFKSDEVAAVMKDFDEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITVKKTGQALIIGIYDEPLTPGQCNMIVERLGDYLLDQGL 131          
BLAST of GE213472 vs. ExPASy Swiss-Prot
Match: PROF1_WHEAT (Profilin-1 (Fragment) OS=Triticum aestivum GN=PRO1 PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 6.797e-60
Identity = 104/130 (80.00%), Postives = 116/130 (89.23%), Query Frame = 2
Query:  167 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 556
            MSWQ YVDDHL CEI+G HL++AAI+GHDGSVW +S NFP+ KPEEI GI+ DF EPG LAPTGL+LGGTKYMVIQGEPG VIRGKKG GG+TIKKT  ALI+GIYDEPMTPGQCN++VERLGDYLIDQG
Sbjct:    1 MSWQTYVDDHLCCEIDGQHLTSAAILGHDGSVWTESPNFPKFKPEEIAGIVKDFEEPGHLAPTGLFLGGTKYMVIQGEPGVVIRGKKGTGGITIKKTGMALILGIYDEPMTPGQCNLVVERLGDYLIDQG 130          
BLAST of GE213472 vs. ExPASy Swiss-Prot
Match: PROF1_PHLPR (Profilin-1 OS=Phleum pratense GN=PRO1 PE=1 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 8.878e-60
Identity = 101/131 (77.10%), Postives = 120/131 (91.60%), Query Frame = 2
Query:  167 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 559
            MSWQ YVD+HL+CEIEG+HL++AAI+GHDG+VWAQS +FPQ KPEEITGIM DF+EPG LAPTG+++ G KYMVIQGEPG VIRGKKG GG+TIKKT  AL++GIYDEPMTPGQCNM+VERLGDYL++QG+
Sbjct:    1 MSWQTYVDEHLMCEIEGHHLASAAILGHDGTVWAQSADFPQFKPEEITGIMKDFDEPGHLAPTGMFVAGAKYMVIQGEPGRVIRGKKGAGGITIKKTGQALVVGIYDEPMTPGQCNMVVERLGDYLVEQGM 131          
BLAST of GE213472 vs. ExPASy Swiss-Prot
Match: PROF_CYNDA (Profilin OS=Cynodon dactylon GN=PRO1 PE=1 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.514e-59
Identity = 104/131 (79.39%), Postives = 119/131 (90.84%), Query Frame = 2
Query:  167 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 559
            MSWQAYVDDHL+CEIEG+HL++AAIIGHDG+VWAQS  FP  KPEE+  IM DF+EPG LAPTGL+LG TKYMVIQGEPGAVIRGKKG GGVT+KKT  AL+IGIYDEPMTPGQCNM++E+LGDYLI+QG+
Sbjct:    1 MSWQAYVDDHLMCEIEGHHLTSAAIIGHDGTVWAQSAAFPAFKPEEMANIMKDFDEPGFLAPTGLFLGPTKYMVIQGEPGAVIRGKKGSGGVTVKKTGQALVIGIYDEPMTPGQCNMVIEKLGDYLIEQGM 131          
BLAST of GE213472 vs. ExPASy Swiss-Prot
Match: PROF3_WHEAT (Profilin-3 OS=Triticum aestivum GN=PRO3 PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.514e-59
Identity = 105/130 (80.77%), Postives = 117/130 (90.00%), Query Frame = 2
Query:  167 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 556
            MSW+AYVDDHL CEI+G +L++AAI+GHDGSVWAQS NFPQ KPEE  GI+ DF EPG LAPTGL+LGGTKYMVIQGEPG VIRGKKG GG+TIKKT  ALI+GIYDEPMTPGQCN++VERLGDYLIDQG
Sbjct:    1 MSWKAYVDDHLCCEIDGQNLTSAAILGHDGSVWAQSPNFPQFKPEENAGIVKDFEEPGHLAPTGLFLGGTKYMVIQGEPGVVIRGKKGTGGITIKKTGMALILGIYDEPMTPGQCNLVVERLGDYLIDQG 130          
BLAST of GE213472 vs. ExPASy Swiss-Prot
Match: PROF3_MALDO (Profilin-3 OS=Malus domestica PE=1 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.514e-59
Identity = 104/131 (79.39%), Postives = 121/131 (92.37%), Query Frame = 2
Query:  167 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 559
            MSWQAYVDDHL+C+I+GN L+AAAI+G DGSVW+QS +FP  KPEEI  I+ DF++PGTLAPTGL+LGGTKYMVIQGEPGAVIRGKKG GG+TIKKTS AL+IGIYDEP+TPGQCN++VERLGDYLI+QGL
Sbjct:    1 MSWQAYVDDHLMCDIDGNRLTAAAILGQDGSVWSQSASFPAFKPEEIAAILKDFDQPGTLAPTGLFLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTSQALLIGIYDEPVTPGQCNIVVERLGDYLIEQGL 131          
BLAST of GE213472 vs. ExPASy Swiss-Prot
Match: PROF1_PARJU (Profilin-1 OS=Parietaria judaica GN=PRO1 PE=1 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.514e-59
Identity = 106/132 (80.30%), Postives = 121/132 (91.67%), Query Frame = 2
Query:  167 MSWQAYVDDHLLCEI-EGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 559
            MSWQAYVDDHL+C++ +GN  ++AAIIGHDGSVWAQS NFPQLKPEE+TGIMNDFNE G LAPTGL+LGGTKYMVIQGE GAVIRGKKG GG T+KKT  A++IGIYDEPMTPGQCN++VERLGDYL++QGL
Sbjct:    1 MSWQAYVDDHLMCDVGDGNTPASAAIIGHDGSVWAQSANFPQLKPEEVTGIMNDFNEAGFLAPTGLFLGGTKYMVIQGESGAVIRGKKGSGGATLKKTGQAIVIGIYDEPMTPGQCNLVVERLGDYLLEQGL 132          
BLAST of GE213472 vs. ExPASy Swiss-Prot
Match: PROF3_MAIZE (Profilin-3 OS=Zea mays GN=PRO3 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.978e-59
Identity = 103/131 (78.63%), Postives = 119/131 (90.84%), Query Frame = 2
Query:  167 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 559
            MSWQ YVD+HL+CEIEG+HLS+AAI+GHDG+VWAQS  FPQ KPEE+T I+ DF+EPG LAP GL+LG TKYMVIQGEPGAVIRGKKG GG+T+KKT  AL+IGIYDEPMTPGQCNM+VERLGDYL++QGL
Sbjct:    1 MSWQTYVDEHLMCEIEGHHLSSAAIVGHDGAVWAQSTAFPQFKPEEMTNIIKDFDEPGFLAPIGLFLGPTKYMVIQGEPGAVIRGKKGSGGITVKKTGQALVIGIYDEPMTPGQCNMVVERLGDYLVEQGL 131          
BLAST of GE213472 vs. ExPASy Swiss-Prot
Match: PROF1_MALDO (Profilin-1 OS=Malus domestica PE=1 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.978e-59
Identity = 105/131 (80.15%), Postives = 119/131 (90.84%), Query Frame = 2
Query:  167 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 559
            MSWQAYVDD L+C+I+G+HL+AAAI+GHDGSVWA S  FP+ KPEEIT IM DF+EPG+LAPTGL+LGGTKYMVIQGE GAVIRGKKG GGVT+KKT  AL+ GIY+EP+TPGQCNMIVERLGDYLIDQGL
Sbjct:    1 MSWQAYVDDRLMCDIDGHHLTAAAILGHDGSVWAHSSTFPKFKPEEITAIMKDFDEPGSLAPTGLHLGGTKYMVIQGEGGAVIRGKKGSGGVTVKKTGQALVFGIYEEPLTPGQCNMIVERLGDYLIDQGL 131          
The following BLAST results are available for this feature:
BLAST of GE213472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
PROFA_ORYSJ3.985e-6078.63Profilin-A OS=Oryza sativa subsp. japonica GN=Os10... [more]
PROF6_HEVBR5.205e-6079.39Profilin-6 OS=Hevea brasiliensis PE=1 SV=1[more]
PROF1_WHEAT6.797e-6080.00Profilin-1 (Fragment) OS=Triticum aestivum GN=PRO1... [more]
PROF1_PHLPR8.878e-6077.10Profilin-1 OS=Phleum pratense GN=PRO1 PE=1 SV=1[more]
PROF_CYNDA1.514e-5979.39Profilin OS=Cynodon dactylon GN=PRO1 PE=1 SV=1[more]
PROF3_WHEAT1.514e-5980.77Profilin-3 OS=Triticum aestivum GN=PRO3 PE=2 SV=1[more]
PROF3_MALDO1.514e-5979.39Profilin-3 OS=Malus domestica PE=1 SV=1[more]
PROF1_PARJU1.514e-5980.30Profilin-1 OS=Parietaria judaica GN=PRO1 PE=1 SV=1[more]
PROF3_MAIZE1.978e-5978.63Profilin-3 OS=Zea mays GN=PRO3 PE=2 SV=1[more]
PROF1_MALDO1.978e-5980.15Profilin-1 OS=Malus domestica PE=1 SV=1[more]

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Properties
Property NameValue
Genbank description352 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.