GE213472

Overview
NameGE213472
Unique NameGE213472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213472 vs. ExPASy Swiss-Prot
Match: PRO1B_ACACA (Profilin-1B OS=Acanthamoeba castellanii PE=1 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 4.928e-18
Identity = 50/130 (38.46%), Postives = 74/130 (56.92%), Query Frame = 2
Query:  167 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 556
            MSWQ YVD +L   +    ++ AAI+G DG+ WA S  F  + P + T +   FN    +   G  L G  Y+ ++ +  ++  GKKG  GV   KTS A+++G+Y+E + PG    +VE+L DYLI QG
Sbjct:    1 MSWQTYVDTNL---VGTGAVTQAAILGLDGNTWATSAGFA-VTPAQGTTLAGAFNNADAIRAGGFDLAGVHYVTLRADDRSIY-GKKGAAGVITVKTSKAILVGVYNEKIQPGTAANVVEKLADYLIGQG 125          
BLAST of GE213472 vs. ExPASy Swiss-Prot
Match: PRO1A_ACACA (Profilin-1A OS=Acanthamoeba castellanii PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.446e-17
Identity = 48/130 (36.92%), Postives = 75/130 (57.69%), Query Frame = 2
Query:  167 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 556
            MSWQ YVD +L   +    ++ AAI+G DG+ WA S  F  + P +   + + FN    +  +G  L G  Y+ ++ +  ++  GKKG  GV   KTS ++++G+Y+E + PG    +VE+L DYLI QG
Sbjct:    1 MSWQTYVDTNL---VGTGAVTQAAILGLDGNTWATSAGFA-VTPAQGQTLASAFNNADPIRASGFDLAGVHYVTLRADDRSIY-GKKGSAGVITVKTSKSILVGVYNEKIQPGTAANVVEKLADYLIGQG 125          
BLAST of GE213472 vs. ExPASy Swiss-Prot
Match: PROF2_PHYPO (Profilin-P OS=Physarum polycephalum GN=PROP PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 7.116e-17
Identity = 53/130 (40.77%), Postives = 72/130 (55.38%), Query Frame = 2
Query:  167 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 556
            MSWQ YVD+ L   +    L  A IIG DG+ WA S+N   LK  E   I   F  P  +  +G+ + G KYM I+G+  ++  GKKG  GV    T   ++IG Y+E   PG   ++VE+L DYLI+ G
Sbjct:    1 MSWQTYVDEQL---VGTGQLDGAIIIGLDGNSWA-SKNLT-LKAGEGQAIAALFKTPANVFASGITINGIKYMGIKGDSRSIY-GKKGATGVATVITGQCILIGYYNEKQQPGNAALVVEKLADYLIENG 124          
BLAST of GE213472 vs. ExPASy Swiss-Prot
Match: PROF_SCHPO (Profilin OS=Schizosaccharomyces pombe GN=cdc3 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.342e-15
Identity = 52/131 (39.69%), Postives = 68/131 (51.91%), Query Frame = 2
Query:  167 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDG-SVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 556
            MSWQAYVD  LL       +  AAI+   G SVWA S  F  L P+EI G+   F +P ++  TG+ L G KY+ I+ E G  I GK    G+    T   +++  Y E   PG+   I E L DYL+  G
Sbjct:    1 MSWQAYVDTSLLGT---GKIDRAAIVSRAGDSVWAASAGF-NLSPQEIQGLAAGFQDPPSMFGTGIILAGQKYITIRAE-GRSIYGKLQKEGIICVATKLCILVSHYPETTLPGEAAKITEALADYLVGVG 126          
BLAST of GE213472 vs. ExPASy Swiss-Prot
Match: PROF3_CAEEL (Profilin-3 OS=Caenorhabditis elegans GN=pfn-3 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.531e-14
Identity = 47/125 (37.60%), Postives = 69/125 (55.20%), Query Frame = 2
Query:  167 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDY 541
            MSW   ++++L   I   ++S AAI+G DG+VWA+S+NF  +  EE       F     L  TGL L G K++V+  +   +I GK+G  G  I KT  A+II IY++ + P  C+     L DY
Sbjct:    1 MSWSDIINNNL---IGSGNVSKAAILGFDGAVWAKSDNF-NISVEEAVAAGKAFTSLDALLGTGLRLEGQKFLVLNADNDRII-GKQGGSGFFIYKTIQAVIISIYEKGLQPEMCSKTTGALADY 120          
BLAST of GE213472 vs. ExPASy Swiss-Prot
Match: PROF3_DICDI (Profilin-3 OS=Dictyostelium discoideum GN=proC PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.063e-12
Identity = 41/130 (31.54%), Postives = 67/130 (51.54%), Query Frame = 2
Query:  167 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 556
            M+WQAY+D +L   I    +SA  +   DGS WA S  F  +   E   I++ F +    +  G+ +   K  V++ +  ++   KK  GGV + KT+  +++ +Y+  + PG      E LGDYL +QG
Sbjct:    1 MTWQAYIDTNL---IGSGFISAQILSSADGSSWANSNGF-SVSATEAQHILSCFKDSNKASAMGITINNVKNFVLKADDKSIY-AKKDAGGVVLVKTNQTILVAVYNSNLQPGAAANACEALGDYLREQG 125          
BLAST of GE213472 vs. ExPASy Swiss-Prot
Match: PROF_CANAL (Profilin OS=Candida albicans GN=PFY1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.389e-12
Identity = 45/131 (34.35%), Postives = 72/131 (54.96%), Query Frame = 2
Query:  167 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDG-SVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 556
            MSWQAY+D+     I    +  AA+    G ++WAQS +F +L+  EIT I   F+    L  +GL++ G KY +++ +  ++  GK    GV   +T   ++I  Y   + PG+   +VE+L DYLI+ G
Sbjct:    1 MSWQAYIDNL----IANGKVDKAALYSRAGDALWAQSGSF-ELQQPEITEIAKGFDSAEGLQTSGLHVQGQKYFLLRADDRSIY-GKHEAEGVICVRTKQTILIAHYPSGVQPGEATTLVEKLADYLINVG 125          
BLAST of GE213472 vs. ExPASy Swiss-Prot
Match: PROF1_STRPU (Profilin OS=Strongylocentrotus purpuratus PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.893e-12
Identity = 45/137 (32.85%), Postives = 69/137 (50.36%), Query Frame = 2
Query:  167 MSWQAYVDDHLLCEIEGN---HLSAAAIIGHDGSVW-----AQSENFPQLKPEEITGIMNDFNEPGTLA--PTGLYLGGTKYMVIQGEPGAVIRGKK-GPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYL 544
            MSW +YVD+ +    + +   H   A IIG DGS W     + + N  +L PEE+  I   F      A   +G+Y+ GTKY  ++ E   ++ GKK G G +T++ +  A++IG   E    G  N  V  + +YL
Sbjct:    1 MSWDSYVDNLIAQSKDASGTTHCDKACIIGKDGSAWTTMPTSDTSNNLKLTPEEMANIAKCFKSKDFAAFMSSGIYVNGTKYQFLREEDSKLVLGKKKGEGSLTLQSSKTAIVIGHCPEGGQQGNLNKAVGVIAEYL 137          
BLAST of GE213472 vs. ExPASy Swiss-Prot
Match: PROF_ENTHI (Profilin OS=Entamoeba histolytica PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.002e-12
Identity = 51/134 (38.06%), Postives = 70/134 (52.24%), Query Frame = 2
Query:  167 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEIT-GIMNDFNEPGTLAPTGLYLGGTKYMV--IQGEPGAVIRGKKGPGGVTIKKTSAALIIGIY-DEPMTPGQCNMIVERLGDYLIDQG 556
            MSWQ+YVD  L+   +G      AIIG  G VWA S N      E +  G     N  G L  TG+ +GG KYM+  +  + G  + GKKG  G++I KT  A+IIG + D  ++ GQ +    +   YL+D G
Sbjct:    1 MSWQSYVDSFLVGAGKG---MGGAIIGLQGGVWAASANCTPSAQESVAIGTACASNIAG-LQQTGVVIGGKKYMITRVDADEGTAM-GKKGAEGISIYKTKQAVIIGYFSDASVSAGQNSDATYKCAKYLMDAG 129          
The following BLAST results are available for this feature:
BLAST of GE213472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
PRO1B_ACACA4.928e-1838.46Profilin-1B OS=Acanthamoeba castellanii PE=1 SV=3[more]
PRO1A_ACACA2.446e-1736.92Profilin-1A OS=Acanthamoeba castellanii PE=1 SV=2[more]
PROF2_PHYPO7.116e-1740.77Profilin-P OS=Physarum polycephalum GN=PROP PE=1 S... [more]
PROF_SCHPO1.342e-1539.69Profilin OS=Schizosaccharomyces pombe GN=cdc3 PE=1... [more]
PROF3_CAEEL2.531e-1437.60Profilin-3 OS=Caenorhabditis elegans GN=pfn-3 PE=2... [more]
PROF3_DICDI1.063e-1231.54Profilin-3 OS=Dictyostelium discoideum GN=proC PE=... [more]
PROF_CANAL1.389e-1234.35Profilin OS=Candida albicans GN=PFY1 PE=3 SV=1[more]
PROF1_STRPU6.893e-1232.85Profilin OS=Strongylocentrotus purpuratus PE=2 SV=... [more]
PROF_ENTHI9.002e-1238.06Profilin OS=Entamoeba histolytica PE=1 SV=1[more]

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Properties
Property NameValue
Genbank description352 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.