GE213428

Overview
NameGE213428
Unique NameGE213428
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213428 vs. ExPASy Swiss-Prot
Match: VATL4_ARATH (V-type proton ATPase 16 kDa proteolipid subunit c4 OS=Arabidopsis thaliana GN=VHA-C4 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.110e-26
Identity = 63/77 (81.82%), Postives = 63/77 (81.82%), Query Frame = 2
Query:  185 SSTFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIST 415
            SS FSGDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIST
Sbjct:    3 SSGFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIST 79          
BLAST of GE213428 vs. ExPASy Swiss-Prot
Match: VATL_PHAAU (V-type proton ATPase 16 kDa proteolipid subunit OS=Phaseolus aureus PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 9.047e-26
Identity = 61/76 (80.26%), Postives = 63/76 (82.89%), Query Frame = 2
Query:  188 STFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIST 415
            ++FSGDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIST
Sbjct:    2 ASFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIST 77          
BLAST of GE213428 vs. ExPASy Swiss-Prot
Match: VATL_SOLLC (V-type proton ATPase 16 kDa proteolipid subunit OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.182e-25
Identity = 61/76 (80.26%), Postives = 62/76 (81.58%), Query Frame = 2
Query:  188 STFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIST 415
            S F+GDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIST
Sbjct:    2 SNFAGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIST 77          
BLAST of GE213428 vs. ExPASy Swiss-Prot
Match: VATL_PLECA (V-type proton ATPase 16 kDa proteolipid subunit OS=Pleurochrysis carterae GN=VAP PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 4.071e-18
Identity = 47/67 (70.15%), Postives = 53/67 (79.10%), Query Frame = 2
Query:  209 TAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVII 409
            TAP             + +GAAYGTAKSGVGV+SMGVM+P+LVMKSI+PVVMAGVLGIYGLIIAVII
Sbjct:    8 TAPFFGFMGAAVALIFANLGAAYGTAKSGVGVSSMGVMKPDLVMKSIIPVVMAGVLGIYGLIIAVII 74          
BLAST of GE213428 vs. ExPASy Swiss-Prot
Match: VATL_SHEEP (V-type proton ATPase 16 kDa proteolipid subunit OS=Ovis aries GN=ATP6V0C PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.501e-17
Identity = 42/77 (54.55%), Postives = 54/77 (70.13%), Query Frame = 2
Query:  182 MSSTFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIS 412
            MS   SG E A              S +GAAYGTAKSG G+A+M VMRPE++MKSI+PVVMAG++ IYGL++AV+I+
Sbjct:    1 MSEAKSGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEMIMKSIIPVVMAGIIAIYGLVVAVLIA 77          
BLAST of GE213428 vs. ExPASy Swiss-Prot
Match: VATL_NEUCR (V-type proton ATPase 16 kDa proteolipid subunit OS=Neurospora crassa GN=vma-3 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.501e-17
Identity = 35/52 (67.31%), Postives = 52/52 (100.00%), Query Frame = 2
Query:  257 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIS 412
            +C+GA+YGTAKSGVG+A+MGV+RP+L++K+IVPV+MAG++GIYGL+++V+IS
Sbjct:   24 TCLGASYGTAKSGVGIAAMGVLRPDLIVKNIVPVIMAGIIGIYGLVVSVLIS 75          
BLAST of GE213428 vs. ExPASy Swiss-Prot
Match: VATL_RAT (V-type proton ATPase 16 kDa proteolipid subunit OS=Rattus norvegicus GN=Atp6v0c PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.003e-16
Identity = 38/52 (73.08%), Postives = 48/52 (92.31%), Query Frame = 2
Query:  257 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIS 412
            S MGAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+
Sbjct:   26 SAMGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA 77          
BLAST of GE213428 vs. ExPASy Swiss-Prot
Match: VATL_MOUSE (V-type proton ATPase 16 kDa proteolipid subunit OS=Mus musculus GN=Atp6v0c PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.003e-16
Identity = 38/52 (73.08%), Postives = 48/52 (92.31%), Query Frame = 2
Query:  257 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIS 412
            S MGAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+
Sbjct:   26 SAMGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA 77          
BLAST of GE213428 vs. ExPASy Swiss-Prot
Match: VATL_HUMAN (V-type proton ATPase 16 kDa proteolipid subunit OS=Homo sapiens GN=ATP6V0C PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.003e-16
Identity = 42/77 (54.55%), Postives = 54/77 (70.13%), Query Frame = 2
Query:  182 MSSTFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIS 412
            MS + SG E A              S +GAAYGTAKSG G+A+M VMRPE +MKSI+PVVMAG++ IYGL++AV+I+
Sbjct:    1 MSESKSGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVVMAGIIAIYGLVVAVLIA 77          
BLAST of GE213428 vs. ExPASy Swiss-Prot
Match: VATL_BOVIN (V-type proton ATPase 16 kDa proteolipid subunit OS=Bos taurus GN=ATP6V0C PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.003e-16
Identity = 41/77 (53.25%), Postives = 54/77 (70.13%), Query Frame = 2
Query:  182 MSSTFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIS 412
            MS   +G E A              S +GAAYGTAKSG G+A+M VMRPE++MKSI+PVVMAG++ IYGL++AV+I+
Sbjct:    1 MSEAKNGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEMIMKSIIPVVMAGIIAIYGLVVAVLIA 77          
The following BLAST results are available for this feature:
BLAST of GE213428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
VATL4_ARATH3.110e-2681.82V-type proton ATPase 16 kDa proteolipid subunit c4... [more]
VATL_PHAAU9.047e-2680.26V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_SOLLC1.182e-2580.26V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_PLECA4.071e-1870.15V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_SHEEP4.501e-1754.55V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_NEUCR4.501e-1767.31V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_RAT1.003e-1673.08V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_MOUSE1.003e-1673.08V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_HUMAN1.003e-1654.55V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_BOVIN1.003e-1653.25V-type proton ATPase 16 kDa proteolipid subunit OS... [more]

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Properties
Property NameValue
Genbank description303 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.