GE213428

Overview
NameGE213428
Unique NameGE213428
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213428 vs. ExPASy Swiss-Prot
Match: VATL_DROME (V-type proton ATPase 16 kDa proteolipid subunit OS=Drosophila melanogaster GN=Vha16 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.710e-16
Identity = 43/79 (54.43%), Postives = 54/79 (68.35%), Query Frame = 2
Query:  182 MSSTFSGDET--APXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIS 412
            MSS  S D     P             S +GAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+
Sbjct:    1 MSSEVSSDNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA 79          
BLAST of GE213428 vs. ExPASy Swiss-Prot
Match: VATL_TORMA (V-type proton ATPase 16 kDa proteolipid subunit OS=Torpedo marmorata PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.234e-16
Identity = 37/52 (71.15%), Postives = 48/52 (92.31%), Query Frame = 2
Query:  257 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIS 412
            S +GAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+
Sbjct:   25 SALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA 76          
BLAST of GE213428 vs. ExPASy Swiss-Prot
Match: VATL_MANSE (V-type proton ATPase 16 kDa proteolipid subunit OS=Manduca sexta GN=VHA16 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.234e-16
Identity = 37/52 (71.15%), Postives = 48/52 (92.31%), Query Frame = 2
Query:  257 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIS 412
            S +GAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+
Sbjct:   23 SALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA 74          
BLAST of GE213428 vs. ExPASy Swiss-Prot
Match: VATL_HELVI (V-type proton ATPase 16 kDa proteolipid subunit OS=Heliothis virescens GN=VHA16 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.234e-16
Identity = 37/52 (71.15%), Postives = 48/52 (92.31%), Query Frame = 2
Query:  257 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIS 412
            S +GAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+
Sbjct:   23 SALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA 74          
BLAST of GE213428 vs. ExPASy Swiss-Prot
Match: VATL_AEDAE (V-type proton ATPase 16 kDa proteolipid subunit OS=Aedes aegypti GN=AAEL000291 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.234e-16
Identity = 37/52 (71.15%), Postives = 48/52 (92.31%), Query Frame = 2
Query:  257 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIS 412
            S +GAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+
Sbjct:   26 SALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA 77          
BLAST of GE213428 vs. ExPASy Swiss-Prot
Match: VATL_ASCSU (V-type proton ATPase 16 kDa proteolipid subunit OS=Ascaris suum GN=12 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.917e-16
Identity = 34/49 (69.39%), Postives = 48/49 (97.96%), Query Frame = 2
Query:  263 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVII 409
            +GAAYGTAKS VG++SMGVMRPEL+MKS++PV+MAG++GIYGL++A+++
Sbjct:   31 LGAAYGTAKSAVGISSMGVMRPELIMKSVIPVIMAGIIGIYGLVVAMVL 79          
BLAST of GE213428 vs. ExPASy Swiss-Prot
Match: VATL2_CAEEL (V-type proton ATPase 16 kDa proteolipid subunit 2/3 OS=Caenorhabditis elegans GN=vha-2 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 3.810e-16
Identity = 34/49 (69.39%), Postives = 47/49 (95.92%), Query Frame = 2
Query:  263 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVII 409
            +GAAYGTAKS VG+ SMGVMRPEL+MKS++PV+MAG++GIYGL++A+++
Sbjct:   31 LGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYGLVVAMVL 79          
BLAST of GE213428 vs. ExPASy Swiss-Prot
Match: VATL2_CAEBR (V-type proton ATPase 16 kDa proteolipid subunit 2/3 OS=Caenorhabditis briggsae GN=vha-2 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.810e-16
Identity = 34/49 (69.39%), Postives = 47/49 (95.92%), Query Frame = 2
Query:  263 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVII 409
            +GAAYGTAKS VG+ SMGVMRPEL+MKS++PV+MAG++GIYGL++A+++
Sbjct:   31 LGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYGLVVAMVL 79          
BLAST of GE213428 vs. ExPASy Swiss-Prot
Match: VATL_NEPNO (V-type proton ATPase 16 kDa proteolipid subunit OS=Nephrops norvegicus PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.499e-16
Identity = 36/52 (69.23%), Postives = 48/52 (92.31%), Query Frame = 2
Query:  257 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIS 412
            S +GAAYGTAKSGVG+++M VMRPEL+MK I+PVVMAG++ IYGL++AV+I+
Sbjct:   25 SALGAAYGTAKSGVGISAMSVMRPELIMKCIIPVVMAGIIAIYGLVVAVLIA 76          
BLAST of GE213428 vs. ExPASy Swiss-Prot
Match: VATL2_YEAST (V-type proton ATPase subunit c' OS=Saccharomyces cerevisiae GN=VMA11 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.225e-15
Identity = 33/52 (63.46%), Postives = 47/52 (90.38%), Query Frame = 2
Query:  257 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIS 412
            SC+GAA GTAKSG+G+A +G  +PEL+MKS++PVVM+G+L IYGL++AV+I+
Sbjct:   30 SCLGAAIGTAKSGIGIAGIGTFKPELIMKSLIPVVMSGILAIYGLVVAVLIA 81          
The following BLAST results are available for this feature:
BLAST of GE213428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
VATL_DROME1.710e-1654.43V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_TORMA2.234e-1671.15V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_MANSE2.234e-1671.15V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_HELVI2.234e-1671.15V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_AEDAE2.234e-1671.15V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_ASCSU2.917e-1669.39V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL2_CAEEL3.810e-1669.39V-type proton ATPase 16 kDa proteolipid subunit 2/... [more]
VATL2_CAEBR3.810e-1669.39V-type proton ATPase 16 kDa proteolipid subunit 2/... [more]
VATL_NEPNO6.499e-1669.23V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL2_YEAST3.225e-1563.46V-type proton ATPase subunit c' OS=Saccharomyces c... [more]

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Properties
Property NameValue
Genbank description303 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.