GE213428

Overview
NameGE213428
Unique NameGE213428
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213428 vs. ExPASy Swiss-Prot
Match: VATL_ENTDI (V-type proton ATPase 16 kDa proteolipid subunit OS=Entamoeba dispar GN=VMA3 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.147e-12
Identity = 29/48 (60.42%), Postives = 42/48 (87.50%), Query Frame = 2
Query:  266 GAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVII 409
            G AYGTAKS VG++S+GVM+PE +M+S+ PVV AGV+G+YGLI+ +++
Sbjct:   34 GGAYGTAKSSVGISSVGVMKPEFIMRSLFPVVFAGVIGLYGLIVCIVL 81          
BLAST of GE213428 vs. ExPASy Swiss-Prot
Match: VATL1_YEAST (V-type proton ATPase subunit c OS=Saccharomyces cerevisiae GN=VMA3 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.957e-12
Identity = 29/49 (59.18%), Postives = 44/49 (89.80%), Query Frame = 2
Query:  263 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVII 409
            +GAAYGTAKSGVG+ +  V+RP+L+ K+IVPV+MAG++ IYGL+++V++
Sbjct:   26 LGAAYGTAKSGVGICATCVLRPDLLFKNIVPVIMAGIIAIYGLVVSVLV 74          
BLAST of GE213428 vs. ExPASy Swiss-Prot
Match: VATL_ENTHI (V-type proton ATPase 16 kDa proteolipid subunit OS=Entamoeba histolytica GN=VMA3 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.338e-12
Identity = 27/48 (56.25%), Postives = 42/48 (87.50%), Query Frame = 2
Query:  266 GAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVII 409
            G AYGTAKS VG++S+GVM+PE +++S+ PVV AG++G+YGLI+ +++
Sbjct:   36 GGAYGTAKSSVGISSVGVMKPEFIVRSVAPVVFAGIIGLYGLIVCILL 83          
The following BLAST results are available for this feature:
BLAST of GE213428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
VATL_ENTDI1.147e-1260.42V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL1_YEAST1.957e-1259.18V-type proton ATPase subunit c OS=Saccharomyces ce... [more]
VATL_ENTHI3.338e-1256.25V-type proton ATPase 16 kDa proteolipid subunit OS... [more]

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Properties
Property NameValue
Genbank description303 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.