GE213415

Overview
NameGE213415
Unique NameGE213415
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213415 vs. ExPASy Swiss-Prot
Match: SUT41_ARATH (Sulfate transporter 4.1, chloroplastic OS=Arabidopsis thaliana GN=SULTR4;1 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.306e-23
Identity = 51/146 (34.93%), Postives = 89/146 (60.96%), Query Frame = 3
Query:   39 ARPRTSVLGNIPNSRIYRNIEHYPNANNVTGVLILKIDAPIYFANASYLRERIARW-VXXXXXXXXXXXXXXXHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANPGAEVTKKLDKSKFIENMGQEWIYLTVGEAVTAC 473
            A P  +VLG +P + +YRNI+ YP A    G++I++ID+PIYFAN SY+++R+  + V               ++VIL+M  V +ID+S +  L+E+ +    R+++L ++NP  +V   + +S  +E +G+EW ++ V +AV  C
Sbjct:  497 ANPHIAVLGRLPGTTVYRNIKQYPEAYTYNGIVIVRIDSPIYFANISYIKDRLREYEVAVDKYTNRGLEVDRINFVILEMSPVTHIDSSAVEALKELYQEYKTRDIQLAISNPNKDVHLTIARSGMVELVGKEWFFVRVHDAVQVC 642          
BLAST of GE213415 vs. ExPASy Swiss-Prot
Match: SUT42_ARATH (Probable sulfate transporter 4.2 OS=Arabidopsis thaliana GN=SULTR4;2 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.145e-22
Identity = 51/146 (34.93%), Postives = 87/146 (59.59%), Query Frame = 3
Query:   39 ARPRTSVLGNIPNSRIYRNIEHYPNANNVTGVLILKIDAPIYFANASYLRERIARW-VXXXXXXXXXXXXXXXHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANPGAEVTKKLDKSKFIENMGQEWIYLTVGEAVTAC 473
            A P  +VLG +P + +YRN++ YP A    G++I++IDAPIYFAN SY+++R+  + V               ++VIL+M  V  ID+S +  L+++ +    R ++L ++NP  EV   L ++  +E +G+EW ++ V +AV  C
Sbjct:  484 ANPHIAVLGRLPGTTVYRNMKQYPEAYTYNGIVIVRIDAPIYFANISYIKDRLREYEVAIDKHTSKGPDMERIYFVILEMSPVTYIDSSAVEALKDLYEEYKTRGIQLAISNPNKEVLLTLARAGIVELIGKEWFFVRVHDAVQVC 629          
BLAST of GE213415 vs. ExPASy Swiss-Prot
Match: SUT3_STYHA (Low affinity sulfate transporter 3 OS=Stylosanthes hamata GN=ST3 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.495e-22
Identity = 59/153 (38.56%), Postives = 88/153 (57.52%), Query Frame = 3
Query:   21 QVLLFVARPRTSVLGNIPNSRIYRNIEHYPNANNVTGVLILKIDA-PIYFANASYLRERIARWVXXXXXXXXXXXXXXX-HYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANPGAEVTKKLDKSKFIENMGQEWIYLTVGEAVTAC 473
            ++LL   RP   VLG IP +  Y ++  YP A    G+L+++I +  + FANA ++RERI +WV                  +I+DM  + N+DTSGI  LEE+ K L  R ++L + NP  EV  KL  + F++ +G+E ++LTV EAV AC
Sbjct:  483 KILLQAIRPGVEVLGRIPTTEAYCDVAQYPMAVTTPGILVIRISSGSLCFANAGFVRERILKWVEDEEQDNIEEAAKGRVQAIIIDMTDLTNVDTSGILALEELHKKLLSRGVELAMVNPRWEVIHKLKVANFVDKIGKERVFLTVAEAVDAC 635          
BLAST of GE213415 vs. ExPASy Swiss-Prot
Match: SUT22_ARATH (Sulfate transporter 2.2 OS=Arabidopsis thaliana GN=SULTR2;2 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 7.678e-19
Identity = 56/152 (36.84%), Postives = 85/152 (55.92%), Query Frame = 3
Query:   21 QVLLFVARPRTSVLGNIPNSRIYRNIEHYPNANNVTGVLILKIDAPIY-FANASYLRERIARWVXXXXXXXXXXXXXXXH---YVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANPGAEVTKKLDKSKFIENMGQEWIYLTVGEAV 464
            +++L   RP    LG +  + I+ +I  YP AN   G+L L+I +P+  FANA+++R+RI   V               +    VILDM  V  +DTSG+  LEE+ + L   +++LV+A+P   V  KL ++K  E +  E IY+TVGEAV
Sbjct:  493 RIMLSSIRPSIEALGRLSKTDIFGDINQYPMANKTAGLLTLRISSPLLCFANANFIRDRILNSVQEIEGEENEQEVLKENGLQVVILDMSCVMGVDTSGVFALEELHQELASNDIRLVIASPRWRVLHKLKRAKLDEKIKTENIYMTVGEAV 644          
BLAST of GE213415 vs. ExPASy Swiss-Prot
Match: SUT21_ARATH (Sulfate transporter 2.1 OS=Arabidopsis thaliana GN=SULTR2;1 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.678e-19
Identity = 54/154 (35.06%), Postives = 87/154 (56.49%), Query Frame = 3
Query:   21 QVLLFVARPRTSVLGNIPNSRIYRNIEHYPNANNVTGVLILKI-DAPIYFANASYLRERIARWVXXXXXXXXXXXXXXXH--YVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANPGAEVTKKLDKSKFIENMGQEWIYLTVGEAVTAC 473
            +++L   RP    LG +P +  + +   YP      GVLI ++  A + FANAS + ERI  WV                  +V+LDM ++ N+DTSGI+ L E+   L +  ++LV+ NP  +V  KL+++KF++ +G + +YLT+GEA+ AC
Sbjct:  520 KIILISIRPGIETLGRMPGTDTFTDTNQYPMTVKTPGVLIFRVKSALLCFANASSIEERIMGWVDEEEEEENTKSNAKRKILFVVLDMSSLINVDTSGITALLELHNKLIKTGVELVIVNPKWQVIHKLNQAKFVDRIGGK-VYLTIGEALDAC 672          
The following BLAST results are available for this feature:
BLAST of GE213415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
SUT41_ARATH2.306e-2334.93Sulfate transporter 4.1, chloroplastic OS=Arabidop... [more]
SUT42_ARATH1.145e-2234.93Probable sulfate transporter 4.2 OS=Arabidopsis th... [more]
SUT3_STYHA1.495e-2238.56Low affinity sulfate transporter 3 OS=Stylosanthes... [more]
SUT22_ARATH7.678e-1936.84Sulfate transporter 2.2 OS=Arabidopsis thaliana GN... [more]
SUT21_ARATH7.678e-1935.06Sulfate transporter 2.1 OS=Arabidopsis thaliana GN... [more]

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Properties
Property NameValue
Genbank description287 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.