GE213399

Overview
NameGE213399
Unique NameGE213399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213399 vs. ExPASy Swiss-Prot
Match: AG_ARATH (Floral homeotic protein AGAMOUS OS=Arabidopsis thaliana GN=AG PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 5.160e-28
Identity = 57/100 (57.00%), Postives = 78/100 (78.00%), Query Frame = 3
Query:   21 RYKKACADSSNPGSITEANTQFCQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYL 320
            RYKKA +D+SN GS+ E N Q+ QQE+ KLR+QI  IQN NR ++GE + +++ KEL+NLE RLE+ I R+RSKKNE+L +EI++M+KRE+ L NDN  L
Sbjct:   84 RYKKAISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLERSITRIRSKKNELLFSEIDYMQKREVDLHNDNQIL 183          
BLAST of GE213399 vs. ExPASy Swiss-Prot
Match: MAD21_ORYSJ (MADS-box transcription factor 21 OS=Oryza sativa subsp. japonica GN=MADS21 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.271e-26
Identity = 56/101 (55.45%), Postives = 78/101 (77.23%), Query Frame = 3
Query:   21 RYKKACADSSNPGSITEANT-QFCQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYL 320
            RYKKA A +S    + + N+ Q+ QQEA K+R QI+ +QN NRH++GE++  +  KELK+LE RLEKGI R+RSKK+E+L +EIE+M+KRE  LQN+NM+L
Sbjct:   69 RYKKASASTSGSAPVIDVNSHQYFQQEAAKMRHQIQTLQNANRHLIGESIGNMTAKELKSLENRLEKGISRIRSKKHELLFSEIEYMQKREADLQNENMFL 169          
BLAST of GE213399 vs. ExPASy Swiss-Prot
Match: MAD13_ORYSJ (MADS-box transcription factor 13 OS=Oryza sativa subsp. japonica GN=MADS13 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 2.029e-24
Identity = 57/102 (55.88%), Postives = 78/102 (76.47%), Query Frame = 3
Query:   21 RYKKACADSSNPGS-ITEANTQ-FCQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYL 320
            RYKKA A  S  G+ + E N Q + QQE+ KLR QI+ +QN N+H++G+ +S L+ KELK LE+RLEKGI ++R++KNE+L +EI +M KREI+LQNDNM L
Sbjct:   69 RYKKAHACGSTSGAPLIEVNAQQYYQQESAKLRHQIQMLQNTNKHLVGDNVSNLSLKELKQLESRLEKGISKIRARKNELLASEINYMAKREIELQNDNMDL 170          
The following BLAST results are available for this feature:
BLAST of GE213399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
AG_ARATH5.160e-2857.00Floral homeotic protein AGAMOUS OS=Arabidopsis tha... [more]
MAD21_ORYSJ1.271e-2655.45MADS-box transcription factor 21 OS=Oryza sativa s... [more]
MAD13_ORYSJ2.029e-2455.88MADS-box transcription factor 13 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank description269 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.