GE213358

Overview
NameGE213358
Unique NameGE213358
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_ECO5E (Triosephosphate isomerase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=tpiA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.991e-15
Identity = 46/82 (56.10%), Postives = 54/82 (65.85%), Query Frame = -1
Query:  285 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 527
            GTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  173 GTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_ECO57 (Triosephosphate isomerase OS=Escherichia coli O157:H7 GN=tpiA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.991e-15
Identity = 46/82 (56.10%), Postives = 54/82 (65.85%), Query Frame = -1
Query:  285 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 527
            GTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  173 GTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_ECO45 (Triosephosphate isomerase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=tpiA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.991e-15
Identity = 46/82 (56.10%), Postives = 54/82 (65.85%), Query Frame = -1
Query:  285 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 527
            GTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  173 GTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_ECO24 (Triosephosphate isomerase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=tpiA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.991e-15
Identity = 46/82 (56.10%), Postives = 54/82 (65.85%), Query Frame = -1
Query:  285 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 527
            GTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  173 GTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_RHOFD (Triosephosphate isomerase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=tpiA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.305e-14
Identity = 46/79 (58.23%), Postives = 58/79 (73.42%), Query Frame = -1
Query:  297 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAAST-RIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 527
            GTGK A+  QAQ+VH+ LR+ L+   +A + A   +IIYGGS+N AN  EL AQPD+DG LVGGASLK P+F+ II SA
Sbjct:  171 GTGKTASIEQAQQVHSVLRQQLQ---AASIQADRIQIIYGGSMNAANAAELLAQPDIDGGLVGGASLKVPDFLSIIASA 246          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_MYXXD (Triosephosphate isomerase OS=Myxococcus xanthus (strain DK 1622) GN=tpiA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.305e-14
Identity = 45/79 (56.96%), Postives = 52/79 (65.82%), Query Frame = -1
Query:  294 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDIIKSAT 527
            GTG+ AT AQAQEVHA +R  ++     E A   RI YGGSV   N  EL  QPDVDG LVGGASLK  +F  I+K+AT
Sbjct:  178 GTGRNATAAQAQEVHAAIRGLVERLYDGETAGRVRIQYGGSVKPDNAAELLGQPDVDGALVGGASLKAGDFAAIVKAAT 256          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_BACV8 (Triosephosphate isomerase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=tpiA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.305e-14
Identity = 39/67 (58.21%), Postives = 47/67 (70.15%), Query Frame = -1
Query:  327 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 527
            GTGK AT  QAQE+HA +R  + D    EVA +T I+YGGS   +N KEL A PDVDG L+GGA+LK
Sbjct:  173 GTGKTATAEQAQEIHAFIRSLIADKYGKEVADNTSILYGGSCKPSNAKELFANPDVDGGLIGGAALK 239          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_ACIAC (Triosephosphate isomerase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.305e-14
Identity = 44/78 (56.41%), Postives = 55/78 (70.51%), Query Frame = -1
Query:  297 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 527
            GTG+ ATP QAQ+VHA LR  L    ++E A   R++YGGS+N AN   L AQPD+DG LVGGASLK  +F+ II +A
Sbjct:  175 GTGRTATPEQAQQVHAVLRAQLA--AASEHADRIRLLYGGSMNAANAAALLAQPDIDGGLVGGASLKAQDFLQIIAAA 250          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_SERP5 (Triosephosphate isomerase OS=Serratia proteamaculans (strain 568) GN=tpiA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.704e-14
Identity = 47/85 (55.29%), Postives = 57/85 (67.06%), Query Frame = -1
Query:  285 GTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 527
            GTGK ATPAQAQ VH    K+++D+++   A VAA   I YGGSVN  N  EL  QPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  173 GTGKSATPAQAQAVH----KFIRDHIAKQDAAVAAEVIIQYGGSVNDKNAAELFTQPDIDGALVGGASLKADAFAVIVKAAAAAK 253          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_HAES1 (Triosephosphate isomerase OS=Haemophilus somnus (strain 129Pt) GN=tpiA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.704e-14
Identity = 48/83 (57.83%), Postives = 53/83 (63.86%), Query Frame = -1
Query:  282 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKKN 527
            GTGK ATPAQAQ VHA +R  +     A VA    I YGGSVN AN  EL  QPD+DG LVGGASLK   F  I+K+A   KN
Sbjct:  174 GTGKSATPAQAQAVHAFIRGHIAKQSQA-VAERVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKASAFAVIVKAAAKAKN 255          
The following BLAST results are available for this feature:
BLAST of GE213358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
TPIS_ECO5E9.991e-1556.10Triosephosphate isomerase OS=Escherichia coli O157... [more]
TPIS_ECO579.991e-1556.10Triosephosphate isomerase OS=Escherichia coli O157... [more]
TPIS_ECO459.991e-1556.10Triosephosphate isomerase OS=Escherichia coli O45:... [more]
TPIS_ECO249.991e-1556.10Triosephosphate isomerase OS=Escherichia coli O139... [more]
TPIS_RHOFD1.305e-1458.23Triosephosphate isomerase OS=Rhodoferax ferrireduc... [more]
TPIS_MYXXD1.305e-1456.96Triosephosphate isomerase OS=Myxococcus xanthus (s... [more]
TPIS_BACV81.305e-1458.21Triosephosphate isomerase OS=Bacteroides vulgatus ... [more]
TPIS_ACIAC1.305e-1456.41Triosephosphate isomerase OS=Acidovorax avenae sub... [more]
TPIS_SERP51.704e-1455.29Triosephosphate isomerase OS=Serratia proteamacula... [more]
TPIS_HAES11.704e-1457.83Triosephosphate isomerase OS=Haemophilus somnus (s... [more]

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Properties
Property NameValue
Genbank description224 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.