GE213358

Overview
NameGE213358
Unique NameGE213358
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_YERE8 (Triosephosphate isomerase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=tpiA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.226e-14
Identity = 46/85 (54.12%), Postives = 57/85 (67.06%), Query Frame = -1
Query:  285 GTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 527
            GTGK ATPAQAQ VH    K+++D+++   A +AA   I YGGSVN  N  EL  QPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  173 GTGKSATPAQAQAVH----KFIRDHIAKQDAAIAAQVIIQYGGSVNDKNAAELFTQPDIDGALVGGASLKADAFAVIVKAAAAAK 253          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_SHELP (Triosephosphate isomerase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=tpiA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.226e-14
Identity = 44/78 (56.41%), Postives = 54/78 (69.23%), Query Frame = -1
Query:  297 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDIIKSA 527
            GTGK ATP QAQEVHA +RK L + VS  +  + RI+YGGSV  +N  +L AQPDVDG L+GGASL   EF+ +   A
Sbjct:  181 GTGKSATPEQAQEVHAFIRKRLSE-VSPYIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGASLNSTEFLSLCSIA 257          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_HALHL (Triosephosphate isomerase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.226e-14
Identity = 39/78 (50.00%), Postives = 54/78 (69.23%), Query Frame = -1
Query:  297 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 527
            GTG+ ATP QAQ VHA +R+ +++  + E+A    I+YGGS+   N  EL AQPD+DG L+GGASL P+ F+ I  +A
Sbjct:  169 GTGRTATPEQAQAVHAFIRQRVQERDAGEIADQLPILYGGSMKADNAAELLAQPDIDGGLIGGASLDPDSFLSIYNAA 246          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_HAES2 (Triosephosphate isomerase OS=Haemophilus somnus (strain 2336) GN=tpiA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.226e-14
Identity = 47/83 (56.63%), Postives = 53/83 (63.86%), Query Frame = -1
Query:  282 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKKN 527
            GTGK ATPAQAQ VHA +R  +     A VA    I YGGS+N AN  EL  QPD+DG LVGGASLK   F  I+K+A   KN
Sbjct:  174 GTGKSATPAQAQAVHAFIRGHIAKQSQA-VAERVIIQYGGSINDANAAELFTQPDIDGALVGGASLKASAFAVIVKAAAKAKN 255          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_HAEDU (Triosephosphate isomerase OS=Haemophilus ducreyi GN=tpiA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.226e-14
Identity = 46/82 (56.10%), Postives = 55/82 (67.07%), Query Frame = -1
Query:  285 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKK 527
            GTGK ATPAQAQ VHA +R+ + +   A VA    I YGGSVN  N  EL +QPD+DG LVGGASLK   F +I+K+A   K
Sbjct:  175 GTGKSATPAQAQAVHAFIRQHIAEKSQA-VADQLIIQYGGSVNDTNAAELFSQPDIDGALVGGASLKATAFAEIVKAAEKAK 255          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_ENTCL (Triosephosphate isomerase OS=Enterobacter cloacae GN=tpiA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.226e-14
Identity = 46/85 (54.12%), Postives = 58/85 (68.24%), Query Frame = -1
Query:  285 GTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 527
            GTGK ATPAQAQ VH    K+++D+++   A+VA    I YGGSVN +N  EL  QPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  173 GTGKSATPAQAQAVH----KFIRDHIAKADAKVAEQVIIQYGGSVNASNAAELFTQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_BACTN (Triosephosphate isomerase OS=Bacteroides thetaiotaomicron GN=tpiA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.226e-14
Identity = 37/67 (55.22%), Postives = 48/67 (71.64%), Query Frame = -1
Query:  327 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 527
            GTGK A+P QAQE+HA +R  + D    E+A +T I+YGGS   +N KEL + PDVDG L+GGA+LK
Sbjct:  173 GTGKTASPEQAQEIHAFIRSIVADKYGKEIADNTSILYGGSCKPSNAKELFSNPDVDGGLIGGAALK 239          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_ACTPJ (Triosephosphate isomerase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=tpiA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.226e-14
Identity = 48/82 (58.54%), Postives = 53/82 (64.63%), Query Frame = -1
Query:  285 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKK 527
            GTGK ATPAQAQ VHA +R  +     A VA    I YGGSVN AN  EL  QPD+DG LVGGASLK P F  I+K+A   K
Sbjct:  175 GTGKSATPAQAQAVHAFIRGHIAAKSQA-VADQVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKAPAFAVIVKAAEKAK 255          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_ACTP7 (Triosephosphate isomerase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=tpiA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.226e-14
Identity = 48/82 (58.54%), Postives = 53/82 (64.63%), Query Frame = -1
Query:  285 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKK 527
            GTGK ATPAQAQ VHA +R  +     A VA    I YGGSVN AN  EL  QPD+DG LVGGASLK P F  I+K+A   K
Sbjct:  175 GTGKSATPAQAQAVHAFIRGHIAAKSQA-VADQVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKAPAFAVIVKAAEKAK 255          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_ACTP2 (Triosephosphate isomerase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=tpiA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.226e-14
Identity = 48/82 (58.54%), Postives = 53/82 (64.63%), Query Frame = -1
Query:  285 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKK 527
            GTGK ATPAQAQ VHA +R  +     A VA    I YGGSVN AN  EL  QPD+DG LVGGASLK P F  I+K+A   K
Sbjct:  175 GTGKSATPAQAQAVHAFIRGHIAAKSQA-VADQVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKAPAFAVIVKAAEKAK 255          
The following BLAST results are available for this feature:
BLAST of GE213358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
TPIS_YERE82.226e-1454.12Triosephosphate isomerase OS=Yersinia enterocoliti... [more]
TPIS_SHELP2.226e-1456.41Triosephosphate isomerase OS=Shewanella loihica (s... [more]
TPIS_HALHL2.226e-1450.00Triosephosphate isomerase OS=Halorhodospira haloph... [more]
TPIS_HAES22.226e-1456.63Triosephosphate isomerase OS=Haemophilus somnus (s... [more]
TPIS_HAEDU2.226e-1456.10Triosephosphate isomerase OS=Haemophilus ducreyi G... [more]
TPIS_ENTCL2.226e-1454.12Triosephosphate isomerase OS=Enterobacter cloacae ... [more]
TPIS_BACTN2.226e-1455.22Triosephosphate isomerase OS=Bacteroides thetaiota... [more]
TPIS_ACTPJ2.226e-1458.54Triosephosphate isomerase OS=Actinobacillus pleuro... [more]
TPIS_ACTP72.226e-1458.54Triosephosphate isomerase OS=Actinobacillus pleuro... [more]
TPIS_ACTP22.226e-1458.54Triosephosphate isomerase OS=Actinobacillus pleuro... [more]

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Properties
Property NameValue
Genbank description224 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.