GE213358

Overview
NameGE213358
Unique NameGE213358
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_STAAM (Triosephosphate isomerase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=tpiA PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.641e-12
Identity = 40/78 (51.28%), Postives = 52/78 (66.67%), Query Frame = -1
Query:  297 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 527
            GTGK +T   A E+ A +R+ + D  S EV+ +TRI YGGSV   N KE  AQ D+DG LVGGASLK E F+ +++ A
Sbjct:  175 GTGKSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASLKVEDFVQLLEGA 252          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_STAAE (Triosephosphate isomerase OS=Staphylococcus aureus (strain Newman) GN=tpiA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.641e-12
Identity = 40/78 (51.28%), Postives = 52/78 (66.67%), Query Frame = -1
Query:  297 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 527
            GTGK +T   A E+ A +R+ + D  S EV+ +TRI YGGSV   N KE  AQ D+DG LVGGASLK E F+ +++ A
Sbjct:  175 GTGKSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASLKVEDFVQLLEGA 252          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_STAAC (Triosephosphate isomerase OS=Staphylococcus aureus (strain COL) GN=tpiA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.641e-12
Identity = 40/78 (51.28%), Postives = 52/78 (66.67%), Query Frame = -1
Query:  297 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 527
            GTGK +T   A E+ A +R+ + D  S EV+ +TRI YGGSV   N KE  AQ D+DG LVGGASLK E F+ +++ A
Sbjct:  175 GTGKSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASLKVEDFVQLLEGA 252          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_STAA9 (Triosephosphate isomerase OS=Staphylococcus aureus (strain JH9) GN=tpiA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.641e-12
Identity = 40/78 (51.28%), Postives = 52/78 (66.67%), Query Frame = -1
Query:  297 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 527
            GTGK +T   A E+ A +R+ + D  S EV+ +TRI YGGSV   N KE  AQ D+DG LVGGASLK E F+ +++ A
Sbjct:  175 GTGKSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASLKVEDFVQLLEGA 252          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_STAA8 (Triosephosphate isomerase OS=Staphylococcus aureus (strain NCTC 8325) GN=tpiA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.641e-12
Identity = 40/78 (51.28%), Postives = 52/78 (66.67%), Query Frame = -1
Query:  297 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 527
            GTGK +T   A E+ A +R+ + D  S EV+ +TRI YGGSV   N KE  AQ D+DG LVGGASLK E F+ +++ A
Sbjct:  175 GTGKSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASLKVEDFVQLLEGA 252          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_STAA3 (Triosephosphate isomerase OS=Staphylococcus aureus (strain USA300) GN=tpiA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.641e-12
Identity = 40/78 (51.28%), Postives = 52/78 (66.67%), Query Frame = -1
Query:  297 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 527
            GTGK +T   A E+ A +R+ + D  S EV+ +TRI YGGSV   N KE  AQ D+DG LVGGASLK E F+ +++ A
Sbjct:  175 GTGKSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASLKVEDFVQLLEGA 252          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_STAA2 (Triosephosphate isomerase OS=Staphylococcus aureus (strain JH1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.641e-12
Identity = 40/78 (51.28%), Postives = 52/78 (66.67%), Query Frame = -1
Query:  297 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 527
            GTGK +T   A E+ A +R+ + D  S EV+ +TRI YGGSV   N KE  AQ D+DG LVGGASLK E F+ +++ A
Sbjct:  175 GTGKSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASLKVEDFVQLLEGA 252          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_STAA1 (Triosephosphate isomerase OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=tpiA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.641e-12
Identity = 40/78 (51.28%), Postives = 52/78 (66.67%), Query Frame = -1
Query:  297 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 527
            GTGK +T   A E+ A +R+ + D  S EV+ +TRI YGGSV   N KE  AQ D+DG LVGGASLK E F+ +++ A
Sbjct:  175 GTGKSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASLKVEDFVQLLEGA 252          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_CORDI (Triosephosphate isomerase OS=Corynebacterium diphtheriae GN=tpiA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.641e-12
Identity = 38/69 (55.07%), Postives = 44/69 (63.77%), Query Frame = -1
Query:  321 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 527
            GTGKVA+ A AQEV A +R  + +    EVA   RI+YGGSV      E+  QPDVDG LVGGASL  E
Sbjct:  178 GTGKVASAADAQEVCAAIRNLIIELAGKEVAEGLRILYGGSVKAETVAEIVGQPDVDGGLVGGASLDGE 246          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_BACSU (Triosephosphate isomerase OS=Bacillus subtilis GN=tpiA PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 4.641e-12
Identity = 37/76 (48.68%), Postives = 51/76 (67.11%), Query Frame = -1
Query:  303 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIK 527
            GTGK +T   A +V A +RK + ++ S E A   RI YGGSV  AN KE  A+ D+DG LVGGASL+P+ F+ +++
Sbjct:  173 GTGKSSTAKDANDVCAHIRKTVAESFSQEAADKLRIQYGGSVKPANIKEYMAESDIDGALVGGASLEPQSFVQLLE 248          
The following BLAST results are available for this feature:
BLAST of GE213358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
TPIS_STAAM4.641e-1251.28Triosephosphate isomerase OS=Staphylococcus aureus... [more]
TPIS_STAAE4.641e-1251.28Triosephosphate isomerase OS=Staphylococcus aureus... [more]
TPIS_STAAC4.641e-1251.28Triosephosphate isomerase OS=Staphylococcus aureus... [more]
TPIS_STAA94.641e-1251.28Triosephosphate isomerase OS=Staphylococcus aureus... [more]
TPIS_STAA84.641e-1251.28Triosephosphate isomerase OS=Staphylococcus aureus... [more]
TPIS_STAA34.641e-1251.28Triosephosphate isomerase OS=Staphylococcus aureus... [more]
TPIS_STAA24.641e-1251.28Triosephosphate isomerase OS=Staphylococcus aureus... [more]
TPIS_STAA14.641e-1251.28Triosephosphate isomerase OS=Staphylococcus aureus... [more]
TPIS_CORDI4.641e-1255.07Triosephosphate isomerase OS=Corynebacterium dipht... [more]
TPIS_BACSU4.641e-1248.68Triosephosphate isomerase OS=Bacillus subtilis GN=... [more]

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Properties
Property NameValue
Genbank description224 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.