GE213358

Overview
NameGE213358
Unique NameGE213358
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_XANCP (Triosephosphate isomerase OS=Xanthomonas campestris pv. campestris GN=tpiA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.062e-12
Identity = 42/78 (53.85%), Postives = 51/78 (65.38%), Query Frame = -1
Query:  297 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 527
            GTG+ ATP QAQ VHA +R  +     A +A S  I+YGGSV   N  EL +QPDVDG LVGGASL  E F+ I ++A
Sbjct:  172 GTGRTATPDQAQAVHAFIRGEVA-KADARIADSLPILYGGSVKPDNASELFSQPDVDGGLVGGASLVAEDFLAIARAA 248          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_XANC8 (Triosephosphate isomerase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=tpiA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.062e-12
Identity = 42/78 (53.85%), Postives = 51/78 (65.38%), Query Frame = -1
Query:  297 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 527
            GTG+ ATP QAQ VHA +R  +     A +A S  I+YGGSV   N  EL +QPDVDG LVGGASL  E F+ I ++A
Sbjct:  172 GTGRTATPDQAQAVHAFIRGEVA-KADARIADSLPILYGGSVKPDNASELFSQPDVDGGLVGGASLVAEDFLAIARAA 248          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_PSEMY (Triosephosphate isomerase OS=Pseudomonas mendocina (strain ymp) GN=tpiA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.062e-12
Identity = 41/78 (52.56%), Postives = 51/78 (65.38%), Query Frame = -1
Query:  297 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 527
            GTG  ATP QAQEVHA +R  +   + A+VA+  RI+YGGSV  A+  EL    D+DG LVGGASL   EF  I ++A
Sbjct:  173 GTGLTATPEQAQEVHAAIRAQVAQ-LDAQVASELRILYGGSVKAASAAELFGMQDIDGGLVGGASLNADEFGAICRAA 249          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_CLOTH (Triosephosphate isomerase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=tpiA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.062e-12
Identity = 37/67 (55.22%), Postives = 46/67 (68.66%), Query Frame = -1
Query:  327 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 527
            GTGK AT  QA+EV   +R+ +K+    +VA + RI YGGSVN AN  EL   P++DG LVGGASLK
Sbjct:  173 GTGKTATNEQAEEVCGIIRECIKELYGQDVAEAIRIQYGGSVNAANAAELFNMPNIDGGLVGGASLK 239          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_CHLCH (Triosephosphate isomerase OS=Chlorobium chlorochromatii (strain CaD3) GN=tpiA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.062e-12
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = -1
Query:  288 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVK 527
            GTGK AT AQA+EVH  +R  + +      A + RI YGGSV  +N  EL A P++DG L+GGASL   +F+ I+++A  K
Sbjct:  172 GTGKTATSAQAEEVHLMIRTLVTELYGEPAAQALRIQYGGSVKPSNAVELFAMPNIDGGLIGGASLNAADFVAIVQAAAGK 252          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_BACA2 (Triosephosphate isomerase OS=Bacillus amyloliquefaciens (strain FZB42) GN=tpiA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.062e-12
Identity = 37/76 (48.68%), Postives = 51/76 (67.11%), Query Frame = -1
Query:  303 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIK 527
            GTGK +T   A +V A +RK + ++ S E A   RI YGGSV  AN KE  A+ D+DG LVGGASL+P+ F+ +++
Sbjct:  173 GTGKSSTAKDANDVCAHIRKVVAESFSQETADKLRIQYGGSVKPANIKEYMAESDIDGALVGGASLEPQSFVQLLE 248          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_XANOP (Triosephosphate isomerase OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=tpiA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.917e-12
Identity = 44/78 (56.41%), Postives = 50/78 (64.10%), Query Frame = -1
Query:  297 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 527
            GTG  ATP QAQ VHA LR  +     A +A S  I+YGGSV   N  EL AQPDVDG LVGGASL  E F+ I ++A
Sbjct:  172 GTGCTATPEQAQAVHAFLRGEVA-KADARIADSLPILYGGSVKPDNAGELFAQPDVDGGLVGGASLVAEDFLAIARAA 248          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_XANOM (Triosephosphate isomerase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=tpiA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.917e-12
Identity = 44/78 (56.41%), Postives = 50/78 (64.10%), Query Frame = -1
Query:  297 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 527
            GTG  ATP QAQ VHA LR  +     A +A S  I+YGGSV   N  EL AQPDVDG LVGGASL  E F+ I ++A
Sbjct:  172 GTGCTATPEQAQAVHAFLRGEVA-KADARIADSLPILYGGSVKPDNAGELFAQPDVDGGLVGGASLVAEDFLAIARAA 248          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_STRMK (Triosephosphate isomerase OS=Stenotrophomonas maltophilia (strain K279a) GN=tpiA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.917e-12
Identity = 41/78 (52.56%), Postives = 52/78 (66.67%), Query Frame = -1
Query:  297 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDIIKSA 527
            GTG+ AT  QAQ+VHA +R  +   + A +A S  I+YGGSV   N  EL AQPDVDG LVGGASL   +F+ I ++A
Sbjct:  172 GTGRTATKEQAQQVHAFIRGEVA-RIDARIADSLPIVYGGSVKPDNAGELFAQPDVDGGLVGGASLVAADFLAIARAA 248          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_STRM5 (Triosephosphate isomerase OS=Stenotrophomonas maltophilia (strain R551-3) GN=tpiA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.917e-12
Identity = 41/78 (52.56%), Postives = 52/78 (66.67%), Query Frame = -1
Query:  297 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDIIKSA 527
            GTG+ AT  QAQ+VHA +R  +   + A +A S  I+YGGSV   N  EL AQPDVDG LVGGASL   +F+ I ++A
Sbjct:  172 GTGRTATKEQAQQVHAFIRGEVA-RIDARIADSLPIVYGGSVKPDNAGELFAQPDVDGGLVGGASLVAADFLAIARAA 248          
The following BLAST results are available for this feature:
BLAST of GE213358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
TPIS_XANCP6.062e-1253.85Triosephosphate isomerase OS=Xanthomonas campestri... [more]
TPIS_XANC86.062e-1253.85Triosephosphate isomerase OS=Xanthomonas campestri... [more]
TPIS_PSEMY6.062e-1252.56Triosephosphate isomerase OS=Pseudomonas mendocina... [more]
TPIS_CLOTH6.062e-1255.22Triosephosphate isomerase OS=Clostridium thermocel... [more]
TPIS_CHLCH6.062e-1246.91Triosephosphate isomerase OS=Chlorobium chlorochro... [more]
TPIS_BACA26.062e-1248.68Triosephosphate isomerase OS=Bacillus amyloliquefa... [more]
TPIS_XANOP7.917e-1256.41Triosephosphate isomerase OS=Xanthomonas oryzae pv... [more]
TPIS_XANOM7.917e-1256.41Triosephosphate isomerase OS=Xanthomonas oryzae pv... [more]
TPIS_STRMK7.917e-1252.56Triosephosphate isomerase OS=Stenotrophomonas malt... [more]
TPIS_STRM57.917e-1252.56Triosephosphate isomerase OS=Stenotrophomonas malt... [more]

Pages

back to top
Properties
Property NameValue
Genbank description224 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.