GE213358

Overview
NameGE213358
Unique NameGE213358
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_NITEU (Triosephosphate isomerase OS=Nitrosomonas europaea GN=tpiA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.917e-12
Identity = 39/78 (50.00%), Postives = 51/78 (65.38%), Query Frame = -1
Query:  297 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDIIKSA 527
            GTGK ATP QAQ+VH  +R  +  + S  +A + +I+YGGSV   N +EL   PD+DG L+GGASL   EFI I  +A
Sbjct:  174 GTGKTATPQQAQDVHKFIRSRIAVH-SGGIAENIQILYGGSVKADNARELFTMPDIDGGLIGGASLVAAEFISICLAA 250          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_LEGPL (Triosephosphate isomerase OS=Legionella pneumophila (strain Lens) GN=tpiA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.917e-12
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = -1
Query:  303 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIK 527
            GTGK ATP QAQ++H  +R  L   ++   A    +IYGGSVN  N K L + PD+DG LVGGASL   +F++I+K
Sbjct:  172 GTGKTATPEQAQKIHQFIRD-LVGEINDSDAKHLTLIYGGSVNENNAKALFSMPDIDGGLVGGASLNAKQFVEIVK 246          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_LEGPH (Triosephosphate isomerase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=tpiA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.917e-12
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = -1
Query:  303 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIK 527
            GTGK ATP QAQ++H  +R  L   ++   A    +IYGGSVN  N K L + PD+DG LVGGASL   +F++I+K
Sbjct:  172 GTGKTATPEQAQKIHQFIRD-LVGEINDSDAKHLTLIYGGSVNENNAKALFSMPDIDGGLVGGASLNAKQFVEIVK 246          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_LEGPC (Triosephosphate isomerase OS=Legionella pneumophila (strain Corby) GN=tpiA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.917e-12
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = -1
Query:  303 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIK 527
            GTGK ATP QAQ++H  +R  L   ++   A    +IYGGSVN  N K L + PD+DG LVGGASL   +F++I+K
Sbjct:  172 GTGKTATPEQAQKIHQFIRD-LVGEINDSDAKHLTLIYGGSVNENNAKALFSMPDIDGGLVGGASLNAKQFVEIVK 246          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_LEGPA (Triosephosphate isomerase OS=Legionella pneumophila (strain Paris) GN=tpiA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.917e-12
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = -1
Query:  303 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIK 527
            GTGK ATP QAQ++H  +R  L   ++   A    +IYGGSVN  N K L + PD+DG LVGGASL   +F++I+K
Sbjct:  172 GTGKTATPEQAQKIHQFIRD-LVGEINDSDAKHLTLIYGGSVNENNAKALFSMPDIDGGLVGGASLNAKQFVEIVK 246          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_IDILO (Triosephosphate isomerase OS=Idiomarina loihiensis GN=tpiA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.917e-12
Identity = 38/78 (48.72%), Postives = 52/78 (66.67%), Query Frame = -1
Query:  297 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 527
            GTG+ A+P QAQ+VHA+LR  L +   A +     ++YGGSV   N  EL AQ D+DG L+GGASLK  +F+ I ++A
Sbjct:  174 GTGETASPEQAQDVHAKLRALLVEQFGA-IGEKMPLLYGGSVKADNAAELFAQKDIDGGLIGGASLKESDFVAICQAA 250          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_BORPE (Triosephosphate isomerase OS=Bordetella pertussis GN=tpiA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.917e-12
Identity = 37/69 (53.62%), Postives = 47/69 (68.12%), Query Frame = -1
Query:  321 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 527
            GTG+ A+P QAQEVH+ +R  L    +++V    R++YGGSV GAN   L A PD+DG LVGGASL  E
Sbjct:  176 GTGRTASPEQAQEVHSAIRVALDGLQASQV----RVLYGGSVKGANAASLFAMPDIDGGLVGGASLVAE 240          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_BORPA (Triosephosphate isomerase OS=Bordetella parapertussis GN=tpiA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.917e-12
Identity = 37/69 (53.62%), Postives = 47/69 (68.12%), Query Frame = -1
Query:  321 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 527
            GTG+ A+P QAQEVH+ +R  L    +++V    R++YGGSV GAN   L A PD+DG LVGGASL  E
Sbjct:  176 GTGRTASPEQAQEVHSAIRVALDGLQASQV----RVLYGGSVKGANAASLFAMPDIDGGLVGGASLVAE 240          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_BORBR (Triosephosphate isomerase OS=Bordetella bronchiseptica GN=tpiA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.917e-12
Identity = 37/69 (53.62%), Postives = 47/69 (68.12%), Query Frame = -1
Query:  321 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 527
            GTG+ A+P QAQEVH+ +R  L    +++V    R++YGGSV GAN   L A PD+DG LVGGASL  E
Sbjct:  176 GTGRTASPEQAQEVHSAIRVALDGLQASQV----RVLYGGSVKGANAASLFAMPDIDGGLVGGASLVAE 240          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_ALCBS (Triosephosphate isomerase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=tpiA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.917e-12
Identity = 40/78 (51.28%), Postives = 53/78 (67.95%), Query Frame = -1
Query:  297 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 527
            GTGK A+P QAQ VHA LR++L  +   ++A S R++YGGSV   N   L AQ D+DG L+GGASL  + FI I ++A
Sbjct:  170 GTGKTASPEQAQAVHACLRQFLAKD-DPDIAQSLRLLYGGSVKADNAALLFAQSDIDGGLIGGASLTADSFIAICQAA 246          
The following BLAST results are available for this feature:
BLAST of GE213358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
TPIS_NITEU7.917e-1250.00Triosephosphate isomerase OS=Nitrosomonas europaea... [more]
TPIS_LEGPL7.917e-1250.00Triosephosphate isomerase OS=Legionella pneumophil... [more]
TPIS_LEGPH7.917e-1250.00Triosephosphate isomerase OS=Legionella pneumophil... [more]
TPIS_LEGPC7.917e-1250.00Triosephosphate isomerase OS=Legionella pneumophil... [more]
TPIS_LEGPA7.917e-1250.00Triosephosphate isomerase OS=Legionella pneumophil... [more]
TPIS_IDILO7.917e-1248.72Triosephosphate isomerase OS=Idiomarina loihiensis... [more]
TPIS_BORPE7.917e-1253.62Triosephosphate isomerase OS=Bordetella pertussis ... [more]
TPIS_BORPA7.917e-1253.62Triosephosphate isomerase OS=Bordetella parapertus... [more]
TPIS_BORBR7.917e-1253.62Triosephosphate isomerase OS=Bordetella bronchisep... [more]
TPIS_ALCBS7.917e-1251.28Triosephosphate isomerase OS=Alcanivorax borkumens... [more]

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Properties
Property NameValue
Genbank description224 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.