GE213358

Overview
NameGE213358
Unique NameGE213358
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_LEIXX (Triosephosphate isomerase OS=Leifsonia xyli subsp. xyli GN=tpiA PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 3.929e-11
Identity = 38/76 (50.00%), Postives = 49/76 (64.47%), Query Frame = -1
Query:  303 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIK 527
            G+G+ ATP QA++V A LR  + + +  EVAA TRI+YGGSV   N      + +VDG LVGGASL   EF  II+
Sbjct:  178 GSGQAATPEQAEQVAAALRAVIAEALGDEVAAKTRILYGGSVKSGNIAGFMRETNVDGALVGGASLDVAEFAAIIR 253          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_DICTD (Triosephosphate isomerase OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=tpiA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.929e-11
Identity = 38/77 (49.35%), Postives = 48/77 (62.34%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKS 527
            GTG  A    A EV   +R+ + +    EV+   RI YGGSVN  N KE  AQ ++DG LVGGASLKP+ F DI++S
Sbjct:  173 GTGHSAKGEDANEVAKLIRRIISEIYDEEVSQKVRIQYGGSVNPQNIKEFLAQSEIDGALVGGASLKPQSFWDIVRS 249          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_RUTMC (Triosephosphate isomerase OS=Ruthia magnifica subsp. Calyptogena magnifica GN=tpiA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.131e-11
Identity = 37/77 (48.05%), Postives = 49/77 (63.64%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKS 527
            GT   ATP QAQ+ HA +R  L +   A++A  T I+YGGS+N  N  EL    D+DG L+GGASLK  +F+ I K+
Sbjct:  172 GTNVTATPQQAQDTHAFIRSMLAE-YDADIAQITSILYGGSMNSRNAAELLNCKDIDGGLIGGASLKAQDFLQICKA 247          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_LACSS (Triosephosphate isomerase OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=tpiA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.131e-11
Identity = 36/75 (48.00%), Postives = 49/75 (65.33%), Query Frame = -1
Query:  306 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDII 527
            GTGK A+  QAQE+ A +R+ +       VA   RI YGGSV  AN KE+  + D+DG LVGGAS++P  F+D++
Sbjct:  173 GTGKTASADQAQEICAVVRQTVAKLYDQTVADKVRIQYGGSVKPANVKEIMGKEDIDGGLVGGASMEPASFLDLV 247          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_DEHE1 (Triosephosphate isomerase OS=Dehalococcoides ethenogenes (strain 195) GN=tpiA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.131e-11
Identity = 39/78 (50.00%), Postives = 47/78 (60.26%), Query Frame = -1
Query:  297 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 527
            GTGK AT A+A    + +RK L D      +  T I+YGGSVN  N  EL  Q D+DG LVGGASLK E F+ I + A
Sbjct:  169 GTGKAATAAEANNTISYIRKVLGDIWGNTASRITPILYGGSVNEKNTAELLCQSDIDGALVGGASLKAESFVSICRQA 246          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_DECAR (Triosephosphate isomerase OS=Dechloromonas aromatica (strain RCB) GN=tpiA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.702e-11
Identity = 38/78 (48.72%), Postives = 51/78 (65.38%), Query Frame = -1
Query:  297 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDIIKSA 527
            GTG  A+PAQAQEVHA +R  + + +   VA   RI+YGGSV   N  EL  Q D+DG L+GGA+L   +F+ I ++A
Sbjct:  172 GTGVTASPAQAQEVHAAIRAKVAE-LDLGVANGLRILYGGSVKPQNAMELFGQDDIDGGLIGGAALVADDFLAICRAA 248          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_PSEHT (Triosephosphate isomerase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=tpiA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.753e-11
Identity = 38/78 (48.72%), Postives = 52/78 (66.67%), Query Frame = -1
Query:  297 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 527
            GTGK A+P QAQ VH  +R  +  ++++++A    I+YGGSVN  N + L AQ D+DG L+GGASLK + F  I  SA
Sbjct:  169 GTGKTASPEQAQSVHKFIRDKIA-SLNSDLAQGLTILYGGSVNEKNSELLFAQTDIDGGLIGGASLKADSFTAICNSA 245          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_POLNS (Triosephosphate isomerase OS=Polynucleobacter necessarius (strain STIR1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.753e-11
Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = -1
Query:  300 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDIIKS 527
            GTGKVA+   AQ++H  +R  L +  + +VA+   I+YGGSV   N  EL A PD+DG LVGGASL P +F+ I K+
Sbjct:  177 GTGKVASAQVAQDMHRAIRLQLAE-FNEDVASHVGILYGGSVKPDNAVELFAMPDIDGGLVGGASLSPQDFLAICKA 252          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_LEPIN (Triosephosphate isomerase OS=Leptospira interrogans GN=tpiA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.753e-11
Identity = 35/69 (50.72%), Postives = 48/69 (69.57%), Query Frame = -1
Query:  327 GTGKVATPAQAQEVHAELRKWLKDNV--SAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 527
            GTGKVATP+QAQEVH+ +RK +      ++ ++ S  I+YGGSV   N ++L  + D+DG LVGGAS K
Sbjct:  174 GTGKVATPSQAQEVHSFIRKEISGLFVGASSISESISILYGGSVKPDNIQDLLKEKDIDGGLVGGASQK 242          
BLAST of GE213358 vs. ExPASy Swiss-Prot
Match: TPIS_LEPIC (Triosephosphate isomerase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=tpiA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.753e-11
Identity = 35/69 (50.72%), Postives = 48/69 (69.57%), Query Frame = -1
Query:  327 GTGKVATPAQAQEVHAELRKWLKDNV--SAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 527
            GTGKVATP+QAQEVH+ +RK +      ++ ++ S  I+YGGSV   N ++L  + D+DG LVGGAS K
Sbjct:  174 GTGKVATPSQAQEVHSFIRKEISGLFVGASSISESISILYGGSVKPDNIQDLLKEKDIDGGLVGGASQK 242          
The following BLAST results are available for this feature:
BLAST of GE213358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
TPIS_LEIXX3.929e-1150.00Triosephosphate isomerase OS=Leifsonia xyli subsp.... [more]
TPIS_DICTD3.929e-1149.35Triosephosphate isomerase OS=Dictyoglomus turgidum... [more]
TPIS_RUTMC5.131e-1148.05Triosephosphate isomerase OS=Ruthia magnifica subs... [more]
TPIS_LACSS5.131e-1148.00Triosephosphate isomerase OS=Lactobacillus sakei s... [more]
TPIS_DEHE15.131e-1150.00Triosephosphate isomerase OS=Dehalococcoides ethen... [more]
TPIS_DECAR6.702e-1148.72Triosephosphate isomerase OS=Dechloromonas aromati... [more]
TPIS_PSEHT8.753e-1148.72Triosephosphate isomerase OS=Pseudoalteromonas hal... [more]
TPIS_POLNS8.753e-1149.35Triosephosphate isomerase OS=Polynucleobacter nece... [more]
TPIS_LEPIN8.753e-1150.72Triosephosphate isomerase OS=Leptospira interrogan... [more]
TPIS_LEPIC8.753e-1150.72Triosephosphate isomerase OS=Leptospira interrogan... [more]

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Properties
Property NameValue
Genbank description224 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.