GE213340

Overview
NameGE213340
Unique NameGE213340
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213340 vs. ExPASy Swiss-Prot
Match: SAHH_PYRFU (Adenosylhomocysteinase OS=Pyrococcus furiosus GN=ahcY PE=3 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 2.436e-35
Identity = 92/209 (44.02%), Postives = 121/209 (57.89%), Query Frame = -3
Query:   38 IRCKKMEPSC---FPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVCGYGDVGKGCAAALKQAGARVIVTEIDPICALQALMEGLQVLTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIA 655
            IR + ME +    FP I VNDS  K  FDN YG   S  DG+MRAT+++IAGK  VV GYG  G+G A   +  GA VIV E+DPI AL+A M+G  V+ +++     DIFVT TGN   I  +H + MK+ AI+ N GHFD EI    LE    V+    +P    +   +    + +LA+GRL+NL  A GHP+ +M  SF  Q  A
Sbjct:  159 IRLRAMEKAGILKFPVIAVNDSYMKYLFDNRYGTGQSTWDGIMRATNLLIAGKNVVVVGYGWCGRGIAMRARGLGATVIVVEVDPIKALEARMDGFLVMDMKEAAKIGDIFVTATGNIKCIRREHFELMKDGAIMANAGHFDVEIWKPDLEKL-AVEINNPRPNVTEYKLKD-GRRLYLLADGRLVNLVAADGHPAEIMDMSFALQAKA 365          
BLAST of GE213340 vs. ExPASy Swiss-Prot
Match: SAHH_PYRKO (Adenosylhomocysteinase OS=Pyrococcus kodakaraensis GN=ahcY PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.182e-35
Identity = 89/209 (42.58%), Postives = 120/209 (57.42%), Query Frame = -3
Query:   38 IRCKKMEPSC---FPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVCGYGDVGKGCAAALKQAGARVIVTEIDPICALQALMEGLQVLTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIA 655
            IR + ME      FP I VNDS TK  FDN YG   S  DG++R T++++AGK  VV GYG  G+G A   +  GA VIV E+DPI AL+A M+G  V+ + +     DIF+T TG+ + I  +H + MK+ AI+ N GHFD EI    LE    V+    +P    +   +    + +LAEGRL+NL  A GHP+ +M  SF  Q  A
Sbjct:  159 IRLRAMEKDGVLKFPIIAVNDSYTKYLFDNRYGTGQSTWDGIIRTTNLLVAGKNVVVVGYGWCGRGIAMRARGLGATVIVVEVDPIRALEARMDGFLVMDMMEAAKVGDIFITATGDINCIRKEHFELMKDGAILANAGHFDVEISKPDLEAL-AVEISEPRPNITEYKMAD-GRRLYLLAEGRLVNLAAADGHPAEIMDMSFALQAKA 365          
BLAST of GE213340 vs. ExPASy Swiss-Prot
Match: SAHH_HALWD (Adenosylhomocysteinase OS=Haloquadratum walsbyi (strain DSM 16790) GN=achY PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.210e-34
Identity = 83/213 (38.97%), Postives = 116/213 (54.46%), Query Frame = -3
Query:    8 FPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVCGYGDVGKGCAAALKQAGARVIVTEIDPICALQALMEGLQVLTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDV-----LGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGC--ATGHPSFVMSCSFTNQVIAQLELWKEKST 625
            +P   VND+  K  FDN++G   S    +   T++  AGK  VV GYG  GKG A       A VIVTE++P  AL+A MEG +V+ + +  +  D+FVTTTGN+D+I  +  + M + AI+ N GHFD EI++     L ++TY     +      D          + VLAEGRL+NL    A GHP+ VM  SF  Q +   EL + KS+
Sbjct:  181 YPVFAVNDTPMKRLFDNVHGTGESALATIAMTTNLSYAGKNVVVAGYGYCGKGVAQKAAGQNANVIVTEVEPRRALEAHMEGYEVMPMNEAATRGDVFVTTTGNRDVITQEDFEVMSDGAILANAGHFDVEINLEELSELAIDTYEARDGVQAYELGD-------GRRLNVLAEGRLVNLAAPIALGHPAEVMDQSFGIQAVCVRELIENKSS 386          

HSP 2 Score: 31.9574 bits (71), Expect = 2.210e-34
Identity = 14/29 (48.28%), Postives = 20/29 (68.97%), Query Frame = -2
Query:  621 ERLVGVSEETTTGVKRLYQMQENGTLLFP 707
            + ++G +EETTTGV RL  M E+  L +P
Sbjct:  154 DTIIGGAEETTTGVHRLRAMDEDDELQYP 182          
BLAST of GE213340 vs. ExPASy Swiss-Prot
Match: SAHH_HALSA (Adenosylhomocysteinase OS=Halobacterium salinarium GN=ahcY PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 7.958e-31
Identity = 77/210 (36.67%), Postives = 108/210 (51.43%), Query Frame = -3
Query:   26 FPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVCGYGDVGKGCAAALKQAGARVIVTEIDPICALQALMEGLQVLTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDVLGL--------ETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLG--CATGHPSFVMSCSFTNQVIAQLEL 625
            +P   VND+  K  FDN++G   S    +   T++  AGK  VV GYGD G+G A       A VIVTE++P  AL+A MEG  V+ + +     D+F+TTTGNK++I   H ++M +  ++ N GHFD E+++  L        E   GV+   +               + VLAEGRL+NL      GHP  VM  SF  Q +   EL
Sbjct:  176 YPVFAVNDTPMKRLFDNVHGTGESALANIAMTTNLSWAGKDVVVAGYGDCGRGVAKKAAGQNANVIVTEVEPRRALEAHMEGYDVMPMAEAAEVGDVFLTTTGNKNVITRAHFERMDDGVVLANAGHFDVEVNLDHLSELAVSEREAREGVREYEL----------ADGRRLNVLAEGRLVNLASPIGLGHPVGVMDQSFGVQAVCVREL 375          

HSP 2 Score: 30.8018 bits (68), Expect = 7.958e-31
Identity = 13/29 (44.83%), Postives = 20/29 (68.97%), Query Frame = -2
Query:  621 ERLVGVSEETTTGVKRLYQMQENGTLLFP 707
            + ++G +EETTTGV RL  M ++  L +P
Sbjct:  149 DTIIGGTEETTTGVHRLRAMDDDDALEYP 177          
BLAST of GE213340 vs. ExPASy Swiss-Prot
Match: SAHH_STRFR (Adenosylhomocysteinase (Fragment) OS=Streptomyces fradiae GN=ahcY PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.898e-12
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = -3
Query:   23 PGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELW 205
            PG+ +  +KPQ   W F +    IIVL+EGRL+NLG ATGHPSFVMS SF +Q +AQ+EL+
Sbjct:    2 PGIVKDEVKPQVHTWTFADGKK-IIVLSEGRLLNLGNATGHPSFVMSNSFADQTLAQIELY 61          
The following BLAST results are available for this feature:
BLAST of GE213340 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 245
Match NameE-valueIdentityDescription
SAHH_PYRFU2.436e-3544.02Adenosylhomocysteinase OS=Pyrococcus furiosus GN=a... [more]
SAHH_PYRKO3.182e-3542.58Adenosylhomocysteinase OS=Pyrococcus kodakaraensis... [more]
SAHH_HALWD2.210e-3438.97Adenosylhomocysteinase OS=Haloquadratum walsbyi (s... [more]
SAHH_HALSA7.958e-3136.67Adenosylhomocysteinase OS=Halobacterium salinarium... [more]
SAHH_STRFR2.898e-1257.38Adenosylhomocysteinase (Fragment) OS=Streptomyces ... [more]

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Properties
Property NameValue
Genbank description201 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.