GE213329

Overview
NameGE213329
Unique NameGE213329
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213329 vs. ExPASy Swiss-Prot
Match: GUN3_ORYSJ (Endoglucanase 3 OS=Oryza sativa subsp. japonica GN=GLU8 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.547e-17
Identity = 43/99 (43.43%), Postives = 58/99 (58.59%), Query Frame = 1
Query:   28 CGPNFFSTDTLREFAKTQIDYILGKNPRKMSYIVGFGNHYPKHVHHRGASIPK---NKIRYNCKGGWKLRDSSKPNPNTLVGALVAGPDKHDGFRDVRT 315
            CG    +   LR  A+ Q+DY+LG NP  MSY+VG+G  YP+ +HHR +S+P    +  R  C  G+    S   NPN LVGA+V GP+  D F D R+
Sbjct:  372 CGGAAVTPARLRAIARQQVDYLLGSNPMGMSYMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYSGVANPNVLVGAVVGGPNLQDQFPDQRS 470          
BLAST of GE213329 vs. ExPASy Swiss-Prot
Match: GUN8_ORYSJ (Endoglucanase 8 OS=Oryza sativa subsp. japonica GN=Os02g0778600 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.326e-17
Identity = 46/104 (44.23%), Postives = 57/104 (54.81%), Query Frame = 1
Query:   28 CGPNFFSTDTLREFAKTQIDYILGKNPRKMSYIVGFGNHYPKHVHHRGASIPKNKIRYNCKGGWKLRD---SSKPNPNTLVGALVAGPDKHDGFRDVRTSAATT 330
            CG        L +FAK QIDY+LG NPR  SY+VGFG + P   HHRGAS P     Y    G    +     +PNPN L GA++ GPD  D F D R +++ T
Sbjct:  370 CGAQAVQPARLLQFAKQQIDYLLGANPRGRSYVVGFGVNPPTQPHHRGASTPVLPPGYQVNCGMSFSEWFTPDRPNPNELTGAIMGGPDGGDNFSDKRGNSSCT 473          
BLAST of GE213329 vs. ExPASy Swiss-Prot
Match: GUN1_ORYSJ (Endoglucanase 1 OS=Oryza sativa subsp. japonica GN=GLU7 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 9.677e-17
Identity = 48/93 (51.61%), Postives = 57/93 (61.29%), Query Frame = 1
Query:   70 AKTQIDYILGKNPRKMSYIVGFGNHYPKHVHHRGASIPK---NKIRYNCKGG---WKLRDSSKPNPNTLVGALVAGPDKHDGFRDVRTSAATT 330
            AK+Q+DYILG NPR +SY+VG+G  YP+  HHRGASI     N    +CK G   W  R  S  NPN L GA+V GPD  DGF D R +   T
Sbjct:  403 AKSQVDYILGSNPRGISYMVGYGARYPRRAHHRGASIVSIRANPSFVSCKDGYASWFGRAGS--NPNLLDGAVVGGPDGRDGFADERNNYQQT 493          
BLAST of GE213329 vs. ExPASy Swiss-Prot
Match: GUN15_ORYSJ (Endoglucanase 15 OS=Oryza sativa subsp. japonica GN=Os05g0212300 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 9.677e-17
Identity = 51/118 (43.22%), Postives = 69/118 (58.47%), Query Frame = 1
Query:    7 SGRPGRYCGPNFFSTDTLREFAKTQIDYILGKNPRKMSYIVGFGNHYPKHVHHRGA---SIPKNKIRYNCKGG---WKLRDSSKPNPNTLVGALVAGPDKHDGFRDVR-----TSAAT 327
            SGR   +C         + +F K+Q++YILG NPR  SY+VG+G  YP+ VHHRGA   SI ++    +C+ G   W  R++   NPN L GA+V GPD++D F D R     T AAT
Sbjct:  370 SGRGAVHCPAGAAQPFDILKFVKSQVNYILGDNPRGTSYMVGYGASYPRQVHHRGASIVSIKRDPSFVSCQEGYSSWYGREAG--NPNLLDGAVVGGPDEYDDFADERDNYEQTEAAT 485          
BLAST of GE213329 vs. ExPASy Swiss-Prot
Match: GUN11_ORYSJ (Endoglucanase 11 OS=Oryza sativa subsp. japonica GN=GLU4 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 9.677e-17
Identity = 42/90 (46.67%), Postives = 57/90 (63.33%), Query Frame = 1
Query:   55 TLREFAKTQIDYILGKNPRKMSYIVGFGNHYPKHVHHRGASIPK---NKIRYNCKGGWK-LRDSSKPNPNTLVGALVAGPDKHDGFRDVR 312
            TLR  A+ Q+DYILG NP+ MSY+VG+G  +P+ +HHRGAS+P          C+ G+    ++   NPN   GA+V GPD+HD F D R
Sbjct:  385 TLRALARKQVDYILGANPQGMSYMVGYGARFPQRIHHRGASMPSVAAYPAHIGCQEGFSGYFNAGGANPNVHTGAVVGGPDQHDAFPDER 474          
BLAST of GE213329 vs. ExPASy Swiss-Prot
Match: GUN14_ARATH (Endoglucanase 14 OS=Arabidopsis thaliana GN=At2g44560 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.264e-16
Identity = 44/100 (44.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:   28 CGPNFFSTDTLREFAKTQIDYILGKNPRKMSYIVGFGNHYPKHVHHRGA---SIPKNKIRYNCKGGWKL-RDSSKPNPNTLVGALVAGPDKHDGFRDVRT 315
            C         L + A++Q+DYILG NP+ MSY+VG G +YPK  HHR A   SI K+K    C  G+    ++  PNPN L+GA+V GP+ +D + D RT
Sbjct:  369 CPNGALQASDLLDLARSQVDYILGSNPQNMSYMVGVGTNYPKKPHHRAASIVSITKDKTPVTCSEGFDAWFNNPAPNPNVLMGAVVGGPNDNDVYGDERT 468          
BLAST of GE213329 vs. ExPASy Swiss-Prot
Match: GUN7_ORYSJ (Endoglucanase 7 OS=Oryza sativa subsp. japonica GN=GLU10 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.677e-16
Identity = 47/93 (50.54%), Postives = 57/93 (61.29%), Query Frame = 1
Query:   70 AKTQIDYILGKNPRKMSYIVGFGNHYPKHVHHRGASI---PKNKIRYNCKGG---WKLRDSSKPNPNTLVGALVAGPDKHDGFRDVRTSAATT 330
            A+ Q+DY+LG NPR +SY+VG+G  YP  VHHR ASI     +K    C  G   W  R SS  NPN LVGA+V GPD+ D FRD R +   T
Sbjct:  400 ARAQVDYVLGTNPRGISYLVGYGAKYPNRVHHRAASIVPYKHSKEFIGCTQGFDHWFGRRSS--NPNVLVGAIVGGPDRRDRFRDNRENYMQT 490          
BLAST of GE213329 vs. ExPASy Swiss-Prot
Match: GUN5_ARATH (Endoglucanase 5 OS=Arabidopsis thaliana GN=At1g48930 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.677e-16
Identity = 45/103 (43.69%), Postives = 62/103 (60.19%), Query Frame = 1
Query:   28 CGPNFFSTDTLREFAKTQIDYILGKNPRKMSYIVGFGNHYPKHVHHRGASIPK---NKIRYNCKGG---WKLRDSSKPNPNTLVGALVAGPDKHDGFRDVRTS 318
            C         L +FA++Q DYILGKN + MSY+VG+G  YP  VHHRG+SIP     +   +C  G   W  R  S+ +PN + GALV GPD++D + D R++
Sbjct:  372 CPDGLVQPQGLLDFARSQADYILGKNRQGMSYVVGYGPKYPIRVHHRGSSIPSIFAQRSSVSCVQGFDSWYRR--SQGDPNVIYGALVGGPDENDNYSDDRSN 472          
BLAST of GE213329 vs. ExPASy Swiss-Prot
Match: GUN2_ORYSJ (Endoglucanase 2 OS=Oryza sativa subsp. japonica GN=GLU5 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.803e-16
Identity = 49/101 (48.51%), Postives = 60/101 (59.41%), Query Frame = 1
Query:   58 LREFAKTQIDYILGKNPRKMSYIVGFGNHYPKHVHHRGASIPKNKIR---YNCKGG---WKLRDSSKPNPNTLVGALVAGPDKHDGFRDVR-----TSAAT 327
            L  FAK+Q+DYILG NPR  SY+VG+G  YP+  HHRG+SI   +      +C+ G   W  R     NPN L GA+V GPD+HD F D R     T AAT
Sbjct:  394 LLAFAKSQVDYILGSNPRGTSYMVGYGAVYPRQAHHRGSSIASIRASPSFVSCREGYASWYGRRGG--NPNLLDGAVVGGPDEHDDFADERNNYEQTEAAT 492          
BLAST of GE213329 vs. ExPASy Swiss-Prot
Match: GUN22_ORYSJ (Endoglucanase 22 OS=Oryza sativa subsp. japonica GN=GLU11 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 3.113e-15
Identity = 44/93 (47.31%), Postives = 56/93 (60.22%), Query Frame = 1
Query:   70 AKTQIDYILGKNPRKMSYIVGFGNHYPKHVHHRGASIPKNKIR---YNCKGG---WKLRDSSKPNPNTLVGALVAGPDKHDGFRDVRTSAATT 330
            A++Q DYILG+NP ++SY+VG+G  YP  VHHRGASI  +K       C  G   W  R   + NPN L GA+V GP + D FRD R +   T
Sbjct:  420 ARSQADYILGRNPLRLSYMVGYGRRYPARVHHRGASIVSHKEDGRFIGCVQGFDDWFGR--GRANPNVLAGAIVGGPSRRDEFRDDRANYMQT 510          
The following BLAST results are available for this feature:
BLAST of GE213329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
GUN3_ORYSJ2.547e-1743.43Endoglucanase 3 OS=Oryza sativa subsp. japonica GN... [more]
GUN8_ORYSJ3.326e-1744.23Endoglucanase 8 OS=Oryza sativa subsp. japonica GN... [more]
GUN1_ORYSJ9.677e-1751.61Endoglucanase 1 OS=Oryza sativa subsp. japonica GN... [more]
GUN15_ORYSJ9.677e-1743.22Endoglucanase 15 OS=Oryza sativa subsp. japonica G... [more]
GUN11_ORYSJ9.677e-1746.67Endoglucanase 11 OS=Oryza sativa subsp. japonica G... [more]
GUN14_ARATH1.264e-1644.00Endoglucanase 14 OS=Arabidopsis thaliana GN=At2g44... [more]
GUN7_ORYSJ3.677e-1650.54Endoglucanase 7 OS=Oryza sativa subsp. japonica GN... [more]
GUN5_ARATH3.677e-1643.69Endoglucanase 5 OS=Arabidopsis thaliana GN=At1g489... [more]
GUN2_ORYSJ4.803e-1648.51Endoglucanase 2 OS=Oryza sativa subsp. japonica GN... [more]
GUN22_ORYSJ3.113e-1547.31Endoglucanase 22 OS=Oryza sativa subsp. japonica G... [more]

Pages

back to top
Properties
Property NameValue
Genbank description187 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.