GE213324

Overview
NameGE213324
Unique NameGE213324
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213324 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.772e-20
Identity = 39/58 (67.24%), Postives = 47/58 (81.03%), Query Frame = -2
Query:   44 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECG 217
            ++SFKSAIWFWMT Q PKPSCH+VI   W+PS  D  A R+PG+G+ TNIINGG+ECG
Sbjct:  213 IISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGTDQAANRVPGFGVITNIINGGLECG 270          
BLAST of GE213324 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.845e-20
Identity = 40/58 (68.97%), Postives = 47/58 (81.03%), Query Frame = -2
Query:   44 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECG 217
            V+SFKSAIWFWMT Q PKPSCH+VI   W+PS  D  A R+PG+G+ TNIINGG+ECG
Sbjct:  219 VISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECG 276          
BLAST of GE213324 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.845e-20
Identity = 40/58 (68.97%), Postives = 47/58 (81.03%), Query Frame = -2
Query:   44 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECG 217
            V+SFKSAIWFWMT Q PKPSCH+VI   W+PS  D  A R+PG+G+ TNIINGG+ECG
Sbjct:  215 VISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECG 272          
BLAST of GE213324 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.155e-19
Identity = 40/58 (68.97%), Postives = 46/58 (79.31%), Query Frame = -2
Query:   44 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECG 217
            V+SFK+A WFWMT Q PKPSCH VI   W PS  D +AGRLPG+G+ TNIINGG+ECG
Sbjct:  211 VISFKTAFWFWMTPQSPKPSCHNVITGGWTPSGADRSAGRLPGFGVITNIINGGVECG 268          
BLAST of GE213324 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.155e-19
Identity = 41/57 (71.93%), Postives = 47/57 (82.46%), Query Frame = -2
Query:   44 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECG 214
            +SFK+AIWFWMTAQ  KPSCH+VI  +W PSA D +A R PGYG+ TNIINGGIECG
Sbjct:  151 VSFKTAIWFWMTAQGNKPSCHDVITGQWTPSAADASANRQPGYGVITNIINGGIECG 207          
BLAST of GE213324 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.155e-19
Identity = 40/58 (68.97%), Postives = 47/58 (81.03%), Query Frame = -2
Query:   44 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECG 217
            V+SFKSAIWFWMT Q PKPSCH+VI   W+PS  D  A R+PG+G+ TNIINGG+ECG
Sbjct:  215 VISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGVDQAANRVPGFGVITNIINGGLECG 272          
BLAST of GE213324 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.155e-19
Identity = 38/57 (66.67%), Postives = 46/57 (80.70%), Query Frame = -2
Query:   44 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECG 214
            +SFK+A WFWMT Q PKPSCH V+  +W P+ ND  AGR+PGYG+ TNIINGG+ECG
Sbjct:  228 VSFKTAFWFWMTPQSPKPSCHAVMTGQWTPNGNDQAAGRVPGYGVVTNIINGGVECG 284          
BLAST of GE213324 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.509e-19
Identity = 41/65 (63.08%), Postives = 49/65 (75.38%), Query Frame = -2
Query:   23 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGCVGNDAV 217
            ++SF++AIWFWMTAQ  KPSCH VII +W PS  D  A R+PGYG+ TNIINGG+EC    N AV
Sbjct:  156 IISFRTAIWFWMTAQDNKPSCHNVIIGQWTPSPADTAANRVPGYGVITNIINGGLECNMGPNTAV 220          
BLAST of GE213324 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.573e-19
Identity = 40/57 (70.18%), Postives = 46/57 (80.70%), Query Frame = -2
Query:   44 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECG 214
            + FK+AIWFWMTAQPPKPS H VI  +W PS  D  AGR+PG+G+ TNIINGGIECG
Sbjct:  172 VGFKTAIWFWMTAQPPKPSSHAVIAGQWSPSGADRAAGRVPGFGVITNIINGGIECG 228          
BLAST of GE213324 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 2.573e-19
Identity = 40/57 (70.18%), Postives = 45/57 (78.95%), Query Frame = -2
Query:   44 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECG 214
            +SFKSA WFWMT Q PKPSCH VII  W PS++D  AGR  GYG+ TNIINGG+ECG
Sbjct:  200 ISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRATGYGVITNIINGGLECG 256          
The following BLAST results are available for this feature:
BLAST of GE213324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
CHI2_SOLTU6.772e-2067.24Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHIC_SOLLC8.845e-2068.97Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHI3_SOLTU8.845e-2068.97Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHIB_VITVI1.155e-1968.97Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHIB_SOLLC1.155e-1971.93Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI1_SOLTU1.155e-1968.97Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHI1_ORYSJ1.155e-1966.67Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIA_SOLCI1.509e-1963.08Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHI2_HORVU2.573e-1970.1826 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHI2_GOSHI2.573e-1970.18Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]

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Properties
Property NameValue
Genbank description182 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.