GE213324

Overview
NameGE213324
Unique NameGE213324
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213324 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.361e-19
Identity = 40/57 (70.18%), Postives = 46/57 (80.70%), Query Frame = -2
Query:   44 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECG 214
            +SFK+AIWFWMT Q  KPSCH+VI   W PSA D +A R+PGYG+ TNIINGGIECG
Sbjct:  158 VSFKTAIWFWMTPQGNKPSCHDVITGRWTPSAADTSANRVPGYGVITNIINGGIECG 214          
BLAST of GE213324 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 5.733e-19
Identity = 40/64 (62.50%), Postives = 48/64 (75.00%), Query Frame = -2
Query:   23 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGCVGNDAV 214
            +SF +A WFWMT Q PKPSCH V   +W PSA+D  AGR+PGYG+ TNIINGG+ECG   +D V
Sbjct:  231 VSFDTAFWFWMTPQSPKPSCHAVATGQWTPSADDQAAGRVPGYGVITNIINGGLECGHGEDDRV 294          
BLAST of GE213324 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.277e-18
Identity = 40/57 (70.18%), Postives = 46/57 (80.70%), Query Frame = -2
Query:   44 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECG 214
            +SFK+AIWFWMT Q  KPS H+VI   W PSA D +AGR+PGYG+ TNIINGGIECG
Sbjct:  226 VSFKTAIWFWMTPQANKPSSHDVITGRWTPSAADSSAGRVPGYGVITNIINGGIECG 282          
BLAST of GE213324 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.277e-18
Identity = 40/64 (62.50%), Postives = 46/64 (71.88%), Query Frame = -2
Query:   26 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGCVGNDA 217
            ++SFK+AIWFWMT Q  KPSCH VII +W PS  D  A R+PGYG+ TNIING  ECG   N A
Sbjct:  156 IISFKTAIWFWMTEQDNKPSCHNVIIGQWTPSPKDTAANRVPGYGVITNIINGQFECGMGPNTA 219          
BLAST of GE213324 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.277e-18
Identity = 38/57 (66.67%), Postives = 46/57 (80.70%), Query Frame = -2
Query:   44 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECG 214
            +SFK+A+WFWMTAQ PKPS H VI  +W PS  D  AGR+PG+G+ TNI+NGGIECG
Sbjct:  227 VSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECG 283          
BLAST of GE213324 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 91.6633 bits (226), Expect = 1.277e-18
Identity = 38/57 (66.67%), Postives = 46/57 (80.70%), Query Frame = -2
Query:   44 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECG 214
            +SFK+A+WFWMTAQ PKPS H VI  +W PS  D  AGR+PG+G+ TNI+NGGIECG
Sbjct:  224 VSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECG 280          
BLAST of GE213324 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.853e-18
Identity = 42/64 (65.62%), Postives = 47/64 (73.44%), Query Frame = -2
Query:   23 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGCVGNDAV 214
            +SFK+AIWFWMT Q  KPS H+VII  W PSA D +A R PG G+ TNIINGGIECG   N AV
Sbjct:  157 ISFKTAIWFWMTPQDNKPSSHDVIIGSWTPSAADQSANRAPGCGVITNIINGGIECGVGPNAAV 220          
BLAST of GE213324 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.853e-18
Identity = 38/62 (61.29%), Postives = 46/62 (74.19%), Query Frame = -2
Query:   32 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGCVGN 217
            V+SFK+A+WFWMTAQ PKPS H+VI   W PS  D   GR+PG+G+ TNIINGG+EC    N
Sbjct:  151 VVSFKTALWFWMTAQQPKPSAHDVITGRWSPSVADSAPGRVPGFGVITNIINGGMECNSGSN 212          
BLAST of GE213324 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.853e-18
Identity = 38/57 (66.67%), Postives = 45/57 (78.95%), Query Frame = -2
Query:   44 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECG 214
            +SFK+A+WFWMTAQ PKPS H VI  +W PS  D  AGR PG+G+ TNIINGG+ECG
Sbjct:  172 VSFKTALWFWMTAQAPKPSSHAVITGKWSPSGADRAAGRAPGFGVITNIINGGLECG 228          
BLAST of GE213324 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.339e-18
Identity = 36/57 (63.16%), Postives = 45/57 (78.95%), Query Frame = -2
Query:   44 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECG 214
            + FK+A+WFWMT Q PKPS H+VI   W PS+ D  AGR+PGYG+ TNII+GG+ECG
Sbjct:  117 VEFKTALWFWMTPQSPKPSSHDVITGRWSPSSTDKAAGRVPGYGVLTNIIDGGVECG 173          
The following BLAST results are available for this feature:
BLAST of GE213324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
CHIT_PETHY3.361e-1970.18Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHI12_ORYSJ5.733e-1962.50Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIX_PEA1.277e-1870.18Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHIA_SOLLC1.277e-1862.50Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIA_SECCE1.277e-1866.67Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI1_HORVU1.277e-1866.6726 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHIP_TOBAC4.853e-1865.63Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHID_SOLLC4.853e-1861.29Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHIC_SECCE4.853e-1866.67Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHIT_AVESA6.339e-1863.16Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]

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Properties
Property NameValue
Genbank description182 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.