GE213324

Overview
NameGE213324
Unique NameGE213324
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213324 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.146e-17
Identity = 38/64 (59.38%), Postives = 46/64 (71.88%), Query Frame = -2
Query:   23 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGCVGNDAV 214
            +SFK+A+WFWMT Q  KPS H+VI   W PS  D  AGR PGYG+ TNI+NGG+ECG   +D V
Sbjct:  236 VSFKTALWFWMTPQGNKPSSHDVITGRWAPSPADAAAGRAPGYGVITNIVNGGLECGHGPDDRV 299          
BLAST of GE213324 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.726e-15
Identity = 32/64 (50.00%), Postives = 47/64 (73.44%), Query Frame = -2
Query:   23 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGCVGNDAV 214
            ++F++A+WFWMT +  KPSCH+V++ E++P   DV A R  G+GL TNI+NGG+EC   G+  V
Sbjct:  197 IAFQTALWFWMTPRDTKPSCHQVMVGEYRPGPADVAANRTAGFGLVTNIVNGGLECNRAGDARV 260          
BLAST of GE213324 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.553e-14
Identity = 34/58 (58.62%), Postives = 40/58 (68.97%), Query Frame = -2
Query:   47 VLSFKSAIWFWMTAQPP-KPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIEC 217
            VLSF++A+WFWM       PSCHEVI  EW PS  D+ AGR PG+G+ TNII  G EC
Sbjct:  209 VLSFEAALWFWMNPHSTGAPSCHEVITGEWSPSEADIEAGRKPGFGMLTNIITNGGEC 266          
BLAST of GE213324 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.616e-13
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = -2
Query:   47 LSFKSAIWFWMTAQPP-KPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIEC 214
            ++FK+A+W WMTA+ P +PS H V+  +W P+  D  AGR PGYGLTTNI+ GG++C
Sbjct:  237 VAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQC 293          
BLAST of GE213324 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.616e-13
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = -2
Query:   47 LSFKSAIWFWMTAQPP-KPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIEC 214
            ++FK+A+W WMTA+ P +PS H V+  +W P+  D  AGR PGYGLTTNI+ GG++C
Sbjct:  237 VAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQC 293          
BLAST of GE213324 vs. ExPASy Swiss-Prot
Match: CHI4_ARAHY (Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.197e-12
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = -2
Query:   47 MTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIEC 184
            MT Q  KPSCH+VI + W+P+A D  AGR PGYG+ TNIINGG++C
Sbjct:    1 MTPQGNKPSCHDVITNAWRPTATDSAAGRAPGYGVITNIINGGLDC 46          
The following BLAST results are available for this feature:
BLAST of GE213324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
CHI2_ORYSJ3.146e-1759.38Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI10_ORYSJ1.726e-1550.00Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI8_POPTR5.553e-1458.62Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHI7_ORYSJ1.616e-1354.39Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI1.616e-1354.39Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHI4_ARAHY5.197e-1263.04Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=... [more]

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Properties
Property NameValue
Genbank description182 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.