GE213321

Overview
NameGE213321
Unique NameGE213321
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213321 vs. ExPASy Swiss-Prot
Match: LOX5_ORYSJ (Putative lipoxygenase 5 OS=Oryza sativa subsp. japonica GN=Os04g0447100 PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.226e-13
Identity = 36/87 (41.38%), Postives = 56/87 (64.37%), Query Frame = 2
Query:   26 ETLAGLNPYGISLVADWPLKSTLDPETYGPTESAITKELIEKEIGGSMTVEEAIKQKKLFIIDYHDALLPYVEKVRQIKDTTLYGSR 286
            + LAG+NP  I  +  +P  S LDP  YGP ESAIT+E I   + G M+V+EA++  +L+++DYHD  LP+++++        YG+R
Sbjct:  408 QALAGINPVNIERLQAFPPVSKLDPAVYGPPESAITEEHIIGHLDG-MSVQEAVEGSRLYMLDYHDIFLPFLDRINAQDGRKAYGTR 493          
BLAST of GE213321 vs. ExPASy Swiss-Prot
Match: LOX1_HORVU (Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.601e-13
Identity = 35/88 (39.77%), Postives = 58/88 (65.91%), Query Frame = 2
Query:   26 ETLAGLNPYGISLVADWPLKSTLDPETYGPTESAITKELIEKEIGGSMTVEEAIKQKKLFIIDYHDALLPYVEKVRQIKDTTLYGSRT 289
            E LAG+NP  I+ + ++P KS+LDP  +G   S IT E IEK + G +TV++A++  +L+I+D+HD  +P++  V  +    +Y +RT
Sbjct:  364 EVLAGVNPVMITRLTEFPPKSSLDPSKFGDHTSTITAEHIEKNLEG-LTVQQALESNRLYILDHHDRFMPFLIDVNNLPGNFIYATRT 450          
BLAST of GE213321 vs. ExPASy Swiss-Prot
Match: LOX4_ARATH (Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.567e-13
Identity = 34/89 (38.20%), Postives = 58/89 (65.17%), Query Frame = 2
Query:   26 ETLAGLNPYGISLVADWPLKSTLDPETYGP-TESAITKELIEKEIGGSMTVEEAIKQKKLFIIDYHDALLPYVEKVRQIKDTTLYGSRT 289
            + +AG+NP  I  V  +P  S LDPE YGP   SA+T++ I  ++ G +TV++A++  +LF++DYHD  LP+++++  +     Y +RT
Sbjct:  433 QAIAGINPVNIERVTSYPPVSNLDPEIYGPGLHSALTEDHIIGQLDG-LTVQQALETNRLFMVDYHDIYLPFLDRINALDGRKAYATRT 520          
BLAST of GE213321 vs. ExPASy Swiss-Prot
Match: LOX3_ARATH (Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.356e-12
Identity = 31/88 (35.23%), Postives = 56/88 (63.64%), Query Frame = 2
Query:   26 ETLAGLNPYGISLVADWPLKSTLDPETYGPTESAITKELIEKEIGGSMTVEEAIKQKKLFIIDYHDALLPYVEKVRQIKDTTLYGSRT 289
            + +AG+NP  I  V  +P  S LDP+ YGP  SA+T + I   + G  +V++A+++ +L+++DYHD  LP+++++  +     Y +RT
Sbjct:  428 QAIAGINPVNIERVKTFPPVSNLDPKIYGPQHSALTDDHIIGHLDG-FSVQQALEENRLYMLDYHDIFLPFLDRINALDGRKAYATRT 514          
BLAST of GE213321 vs. ExPASy Swiss-Prot
Match: LOX1_SOYBN (Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.770e-12
Identity = 33/88 (37.50%), Postives = 54/88 (61.36%), Query Frame = 2
Query:   26 ETLAGLNPYGISLVADWPLKSTLDPETYGPTESAITKELIEKEIGGSMTVEEAIKQKKLFIIDYHDALLPYVEKVRQIKDTTLYGSRT 289
            E +AG+NP  I  + ++P KS LDP  YG   S IT + ++ +     T++EA+  ++LF++DYHD  +PYV ++ Q+     Y +RT
Sbjct:  349 EMIAGVNPCVIRGLEEFPPKSNLDPAIYGDQSSKITADSLDLD---GYTMDEALGSRRLFMLDYHDIFMPYVRQINQLNSAKTYATRT 433          
BLAST of GE213321 vs. ExPASy Swiss-Prot
Match: LOX1_ORYSJ (Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=Os03g0699700 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.770e-12
Identity = 35/88 (39.77%), Postives = 54/88 (61.36%), Query Frame = 2
Query:   26 ETLAGLNPYGISLVADWPLKSTLDPETYGPTESAITKELIEKEIGGSMTVEEAIKQKKLFIIDYHDALLPYVEKVRQIKDTTLYGSRT 289
            E LAGLNP  I  + ++P KSTLDP  YG   S IT   IEK + G ++V++A+   +L+I+D+HD  +P++  +  +     Y +RT
Sbjct:  366 EILAGLNPMVIRRLTEFPPKSTLDPSKYGDQTSTITPAHIEKNLEG-LSVQQALDSNRLYILDHHDHFMPFLIDINSLDGIFTYATRT 452          
BLAST of GE213321 vs. ExPASy Swiss-Prot
Match: LOX3_SOYBN (Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.312e-12
Identity = 36/88 (40.91%), Postives = 57/88 (64.77%), Query Frame = 2
Query:   26 ETLAGLNPYGISLVADWPLKSTLDPETYGPTESAITKELIEKEIGGSMTVEEAIKQKKLFIIDYHDALLPYVEKVRQIKDTTLYGSRT 289
            E LAG+NP  I  + ++P +S LD + YG   S ITKE +E  + G +TV+EAI+ K+LF++ +HD ++PY+ ++     T  Y +RT
Sbjct:  367 EMLAGVNPNLIRCLKEFPPRSKLDSQVYGDHTSQITKEHLEPNLEG-LTVDEAIQNKRLFLLGHHDPIMPYLRRI-NATSTKAYATRT 452          
BLAST of GE213321 vs. ExPASy Swiss-Prot
Match: LOX2_ORYSJ (Lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=LOX1.1 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.020e-12
Identity = 33/88 (37.50%), Postives = 55/88 (62.50%), Query Frame = 2
Query:   26 ETLAGLNPYGISLVADWPLKSTLDPETYGPTESAITKELIEKEIGGSMTVEEAIKQKKLFIIDYHDALLPYVEKVRQIKDTTLYGSRT 289
            E LAG+NP  I+ + ++P +S LDP  YG   S IT   +E+ + G +TV++AI    L+++D+HD  +PY+  +  + D  +Y +RT
Sbjct:  366 EILAGVNPMVIARLTEFPPRSRLDPARYGDQTSTITAAHVERGLEG-LTVQQAIDGNLLYVVDHHDHFMPYLLDINSLDDNFIYATRT 452          
BLAST of GE213321 vs. ExPASy Swiss-Prot
Match: LOX3_ORYSJ (Putative lipoxygenase 3 OS=Oryza sativa subsp. japonica GN=Os03g0700400 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.361e-11
Identity = 32/88 (36.36%), Postives = 55/88 (62.50%), Query Frame = 2
Query:   26 ETLAGLNPYGISLVADWPLKSTLDPETYGPTESAITKELIEKEIGGSMTVEEAIKQKKLFIIDYHDALLPYVEKVRQIKDTTLYGSRT 289
            E LAG+NP  I+ + ++P KS+LDP  +G   S IT   I   + G +TV++A+   +L+I+D+HD  +P++  V  ++   +Y +RT
Sbjct:  369 EVLAGVNPMMITRLTEFPPKSSLDPSKFGDHTSMITAAHIGSNLEG-LTVQQALDSNRLYILDHHDRFMPFLIDVNGLEGNFIYATRT 455          
BLAST of GE213321 vs. ExPASy Swiss-Prot
Match: LOX2_SOYBN (Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.695e-11
Identity = 33/88 (37.50%), Postives = 53/88 (60.23%), Query Frame = 2
Query:   26 ETLAGLNPYGISLVADWPLKSTLDPETYGPTESAITKELIEKEIGGSMTVEEAIKQKKLFIIDYHDALLPYVEKVRQIKDTTLYGSRT 289
            E +AG+NP  I  + ++P KS LDP  YG   S IT + ++ +     TV+EA+  ++LF++DYHD  +PY+ ++ Q      Y +RT
Sbjct:  378 EMVAGVNPCVIRGLQEFPPKSNLDPTIYGEQTSKITADALDLD---GYTVDEALASRRLFMLDYHDVFMPYIRRINQTY-AKAYATRT 461          
The following BLAST results are available for this feature:
BLAST of GE213321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
LOX5_ORYSJ1.226e-1341.38Putative lipoxygenase 5 OS=Oryza sativa subsp. jap... [more]
LOX1_HORVU1.601e-1339.77Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 S... [more]
LOX4_ARATH3.567e-1338.20Lipoxygenase 4, chloroplastic OS=Arabidopsis thali... [more]
LOX3_ARATH1.356e-1235.23Lipoxygenase 3, chloroplastic OS=Arabidopsis thali... [more]
LOX1_SOYBN1.770e-1237.50Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 ... [more]
LOX1_ORYSJ1.770e-1239.77Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=... [more]
LOX3_SOYBN2.312e-1240.91Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 ... [more]
LOX2_ORYSJ3.020e-1237.50Lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=... [more]
LOX3_ORYSJ4.361e-1136.36Putative lipoxygenase 3 OS=Oryza sativa subsp. jap... [more]
LOX2_SOYBN5.695e-1137.50Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 ... [more]

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Properties
Property NameValue
Genbank description178 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.