GE213291

Overview
NameGE213291
Unique NameGE213291
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213291 vs. ExPASy Swiss-Prot
Match: MPK6_ARATH (Mitogen-activated protein kinase 6 OS=Arabidopsis thaliana GN=MPK6 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.032e-31
Identity = 71/171 (41.52%), Postives = 106/171 (61.99%), Query Frame = -1
Query:   23 YQIFRGLAYIHTVPRVCHRDLKPQNLLVDPLTHQVKICDFGSAKQLIAGEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREEIRCMNPNYTDFRFPQIKAHPWHKVFHK--RMPPEAIDLASRLLQYSPSLRCT 529
            YQI RGL YIH+   V HRDLKP NLL++     +KICDFG A+     +    Y+ +R+YRAPEL+  +++YT +ID+WS GC+  EL+  +PLFPG + V QL  +++++GTP+ EE+  +N N   +   Q+  +P   +  K   + P AIDL  ++L + P  R T
Sbjct:  171 YQILRGLKYIHSA-NVLHRDLKPSNLLLNA-NCDLKICDFGLARVTSESDFMTEYVVTRWYRAPELLLNSSDYTAAIDVWSVGCIFMELMDRKPLFPGRDHVHQLRLLMELIGTPSEEELEFLNENAKRY-IRQLPPYPRQSITDKFPTVHPLAIDLIEKMLTFDPRRRIT 338          
BLAST of GE213291 vs. ExPASy Swiss-Prot
Match: MK01_RAT (Mitogen-activated protein kinase 1 OS=Rattus norvegicus GN=Mapk1 PE=1 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 2.654e-31
Identity = 73/175 (41.71%), Postives = 109/175 (62.29%), Query Frame = -1
Query:   29 YQIFRGLAYIHTVPRVCHRDLKPQNLLVDPLTHQVKICDFGSAKQLIAGEANIS----YICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREEIRCM----NPNYTDFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLR 529
            YQI RGL YIH+   V HRDLKP NLL++  T  +KICDFG A+       +      Y+ +R+YRAPE++  +  YT SIDIWS GC+LAE+L  +P+FPG++ +DQL  I+ +LG+P++E++ C+      NY     P     PW+++F      +A+DL  ++L ++P  R
Sbjct:  129 YQILRGLKYIHSA-NVLHRDLKPSNLLLNT-TCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYL-LSLPHKNKVPWNRLF-PNADSKALDLLDKMLTFNPHKR 299          
BLAST of GE213291 vs. ExPASy Swiss-Prot
Match: MK01_MOUSE (Mitogen-activated protein kinase 1 OS=Mus musculus GN=Mapk1 PE=1 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 2.654e-31
Identity = 73/175 (41.71%), Postives = 109/175 (62.29%), Query Frame = -1
Query:   29 YQIFRGLAYIHTVPRVCHRDLKPQNLLVDPLTHQVKICDFGSAKQLIAGEANIS----YICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREEIRCM----NPNYTDFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLR 529
            YQI RGL YIH+   V HRDLKP NLL++  T  +KICDFG A+       +      Y+ +R+YRAPE++  +  YT SIDIWS GC+LAE+L  +P+FPG++ +DQL  I+ +LG+P++E++ C+      NY     P     PW+++F      +A+DL  ++L ++P  R
Sbjct:  129 YQILRGLKYIHSA-NVLHRDLKPSNLLLNT-TCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYL-LSLPHKNKVPWNRLF-PNADSKALDLLDKMLTFNPHKR 299          
BLAST of GE213291 vs. ExPASy Swiss-Prot
Match: MK01_HUMAN (Mitogen-activated protein kinase 1 OS=Homo sapiens GN=MAPK1 PE=1 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 2.654e-31
Identity = 73/175 (41.71%), Postives = 109/175 (62.29%), Query Frame = -1
Query:   29 YQIFRGLAYIHTVPRVCHRDLKPQNLLVDPLTHQVKICDFGSAKQLIAGEANIS----YICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREEIRCM----NPNYTDFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLR 529
            YQI RGL YIH+   V HRDLKP NLL++  T  +KICDFG A+       +      Y+ +R+YRAPE++  +  YT SIDIWS GC+LAE+L  +P+FPG++ +DQL  I+ +LG+P++E++ C+      NY     P     PW+++F      +A+DL  ++L ++P  R
Sbjct:  131 YQILRGLKYIHSA-NVLHRDLKPSNLLLNT-TCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYL-LSLPHKNKVPWNRLF-PNADSKALDLLDKMLTFNPHKR 301          
BLAST of GE213291 vs. ExPASy Swiss-Prot
Match: MK01_BOVIN (Mitogen-activated protein kinase 1 OS=Bos taurus GN=MAPK1 PE=2 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 2.654e-31
Identity = 73/175 (41.71%), Postives = 109/175 (62.29%), Query Frame = -1
Query:   29 YQIFRGLAYIHTVPRVCHRDLKPQNLLVDPLTHQVKICDFGSAKQLIAGEANIS----YICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREEIRCM----NPNYTDFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLR 529
            YQI RGL YIH+   V HRDLKP NLL++  T  +KICDFG A+       +      Y+ +R+YRAPE++  +  YT SIDIWS GC+LAE+L  +P+FPG++ +DQL  I+ +LG+P++E++ C+      NY     P     PW+++F      +A+DL  ++L ++P  R
Sbjct:  131 YQILRGLKYIHSA-NVLHRDLKPSNLLLNT-TCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYL-LSLPHKNKVPWNRLF-PNADSKALDLLDKMLTFNPHKR 301          
BLAST of GE213291 vs. ExPASy Swiss-Prot
Match: CDKL2_RAT (Cyclin-dependent kinase-like 2 OS=Rattus norvegicus GN=Cdkl2 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.466e-31
Identity = 73/176 (41.48%), Postives = 106/176 (60.23%), Query Frame = -1
Query:   20 YQIFRGLAYIHTVPRVCHRDLKPQNLLVDPLTHQVKICDFGSAKQLIA-GEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGT--PTREEIRCMNPNYTDFRFPQIK---AHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTC 529
            +QI  G+ + H+   + HRD+KP+N+LV   +  VK+CDFG A+ L A GE    Y+ +R+YRAPEL+ G  +Y  ++DIW+ GC++ E+L+GQPLFPGE+ +DQL  I+  LG   P  +E+   NP +   R P+IK   A P    + K +P   I LA + L   P  R  C
Sbjct:  108 FQIINGIGFCHS-HNIIHRDIKPENILVSQ-SGVVKLCDFGFARTLAAPGEVYTDYVATRWYRAPELLVGDVKYGKAVDIWAIGCLVIEMLMGQPLFPGESDIDQLHHIMTCLGNLIPRHQELFYKNPVFAGVRLPEIKDIEAEPLESRYPK-LPEVVISLAKKCLHIDPDKRPLC 280          
BLAST of GE213291 vs. ExPASy Swiss-Prot
Match: MMK1_MEDSA (Mitogen-activated protein kinase homolog MMK1 OS=Medicago sativa GN=MMK1 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.526e-31
Identity = 69/171 (40.35%), Postives = 107/171 (62.57%), Query Frame = -1
Query:   23 YQIFRGLAYIHTVPRVCHRDLKPQNLLVDPLTHQVKICDFGSAKQLIAGEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREEIRCMNPNYTDF--RFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCT 529
            YQI RGL YIH+   V HRDLKP NLL++     +KICDFG A+     +    Y+ +R+YRAPEL+  +++YT +ID+WS GC+  EL+  +PLFPG + V QL  +++++GTP+ +++  +N N   +  + P  +   + + F   + PEAIDL  ++L + P  R T
Sbjct:  163 YQILRGLKYIHSA-NVLHRDLKPSNLLLNA-NCDLKICDFGLARVTSETDFMTEYVVTRWYRAPELLLNSSDYTAAIDVWSVGCIFMELMDRKPLFPGRDHVHQLRLLMELIGTPSEDDLGFLNENAKRYIRQLPPYRRQSFQEKF-PHVHPEAIDLVEKMLTFDPRKRIT 330          
BLAST of GE213291 vs. ExPASy Swiss-Prot
Match: CDKL2_MOUSE (Cyclin-dependent kinase-like 2 OS=Mus musculus GN=Cdkl2 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.526e-31
Identity = 72/176 (40.91%), Postives = 106/176 (60.23%), Query Frame = -1
Query:   20 YQIFRGLAYIHTVPRVCHRDLKPQNLLVDPLTHQVKICDFGSAKQLIA-GEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGT--PTREEIRCMNPNYTDFRFPQIK---AHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTC 529
            +QI  G+ + H+   + HRD+KP+N+LV   +  VK+CDFG A+ L A GE    Y+ +R+YRAPEL+ G  +Y  ++DIW+ GC++ E+L+GQPLFPGE+ +DQL  I+  LG   P  +E+   NP +   R P++K   A P    + K +P   I LA + L   P  R  C
Sbjct:  108 FQIINGIGFCHS-HNIIHRDIKPENILVSQ-SGVVKLCDFGFARTLAAPGEVYTDYVATRWYRAPELLVGDVKYGKAVDIWAIGCLVIEMLMGQPLFPGESDIDQLHHIMTCLGNLIPRHQELFYKNPVFAGVRLPEVKDAEAEPLESRYPK-LPEAVISLAKKCLHIDPDKRPFC 280          
BLAST of GE213291 vs. ExPASy Swiss-Prot
Match: CDKA1_ORYSJ (Cyclin-dependent kinase A-1 OS=Oryza sativa subsp. japonica GN=CDKA-1 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 7.721e-31
Identity = 69/172 (40.12%), Postives = 111/172 (64.53%), Query Frame = -1
Query:   23 YQIFRGLAYIHTVPRVCHRDLKPQNLLVDPLTHQVKICDFGSAKQLIAGEANISY-ICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREEIRCMN--PNYTDFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCT 529
            YQI RG+AY H+  RV HRDLKPQNLL+D  T+ +K+ DFG A+         ++ + + +YRAPE++ G+ +Y+T +D+WS GC+ AE++  +PLFPG++ +D+L +I +VLGTP  +    ++  P+Y    FP+ +A     +    + P  +DL S++L+Y P+ R T
Sbjct:  109 YQILRGVAYCHS-HRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRQYSTPVDMWSVGCIFAEMVNQKPLFPGDSEIDELFKIFRVLGTPNEQSWPGVSSLPDYKS-AFPKWQAQDLATIV-PTLDPAGLDLLSKMLRYEPNKRIT 277          
BLAST of GE213291 vs. ExPASy Swiss-Prot
Match: MPK5_ORYSJ (Mitogen-activated protein kinase 5 OS=Oryza sativa subsp. japonica GN=MPK5 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.008e-30
Identity = 73/172 (42.44%), Postives = 104/172 (60.47%), Query Frame = -1
Query:   23 YQIFRGLAYIHTVPRVCHRDLKPQNLLVDPLTHQVKICDFGSAKQLIAGEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREE---IRCMNPNYTDFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCT 529
            YQI RGL YIH+   V HRDLKP NLL++     +KICDFG A+     +    Y+ +R+YRAPEL+  +T+Y+ +ID+WS GC+  EL+  QPLFPG + + Q+  I +V+GTPT +E   IR  +        PQ     +  +F  R+ P A+DL  R+L ++P  R T
Sbjct:  144 YQILRGLKYIHSA-NVIHRDLKPSNLLLNA-NCDLKICDFGLARPSSESDMMTEYVVTRWYRAPELLLNSTDYSAAIDVWSVGCIFMELINRQPLFPGRDHMHQMRLITEVIGTPTDDELGFIRNEDARKYMRHLPQYPRRTFASMF-PRVQPAALDLIERMLTFNPLQRIT 312          
The following BLAST results are available for this feature:
BLAST of GE213291 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MPK6_ARATH2.032e-3141.52Mitogen-activated protein kinase 6 OS=Arabidopsis ... [more]
MK01_RAT2.654e-3141.71Mitogen-activated protein kinase 1 OS=Rattus norve... [more]
MK01_MOUSE2.654e-3141.71Mitogen-activated protein kinase 1 OS=Mus musculus... [more]
MK01_HUMAN2.654e-3141.71Mitogen-activated protein kinase 1 OS=Homo sapiens... [more]
MK01_BOVIN2.654e-3141.71Mitogen-activated protein kinase 1 OS=Bos taurus G... [more]
CDKL2_RAT3.466e-3141.48Cyclin-dependent kinase-like 2 OS=Rattus norvegicu... [more]
MMK1_MEDSA4.526e-3140.35Mitogen-activated protein kinase homolog MMK1 OS=M... [more]
CDKL2_MOUSE4.526e-3140.91Cyclin-dependent kinase-like 2 OS=Mus musculus GN=... [more]
CDKA1_ORYSJ7.721e-3140.12Cyclin-dependent kinase A-1 OS=Oryza sativa subsp.... [more]
MPK5_ORYSJ1.008e-3042.44Mitogen-activated protein kinase 5 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank description145 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.