GE213291

Overview
NameGE213291
Unique NameGE213291
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213291 vs. ExPASy Swiss-Prot
Match: SSN3_ASPFU (Serine/threonine-protein kinase ssn3 OS=Aspergillus fumigatus GN=ssn3 PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.279e-17
Identity = 66/207 (31.88%), Postives = 100/207 (48.31%), Query Frame = -1
Query:   29 YQIFRGLAYIHTVPRVCHRDLKPQNLLVDPLTHQVKICDFGSA----KQLIAGEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAV-----------DQLVEIIKVLGTPTRE--------------EIRCMNPNYTDFRFPQIKAHPWHKVFHKR-----------MPPEAIDLASRLLQYSPSLR 529
            +Q+  GL Y+HT   V HRDLKP N+LV   +  V+I D G A    K L +  +    + + +YRAPEL+ G+  YT ++D+W+ GC+ AELL  +P+F GE A            +Q+++II ++G P +E              +   M+  Y +    Q     W++   K               E  DL SRLL+Y P+ R
Sbjct:  155 FQLLNGLLYLHT-NWVLHRDLKPANILVTS-SGAVRIGDLGLARLFYKPLNSLYSGDKVVVTIWYRAPELLMGSRHYTPAVDLWAVGCIFAELLSLRPIFKGEEAKMDSKKTVPFQRNQMMKIIDIMGLPRKETWPGLVSMPEFSQLQSLAMSRGYIN---RQCNLEGWYQSCLKNNGYSPGSAAGTPGAEGFDLLSRLLEYDPTKR 356          
BLAST of GE213291 vs. ExPASy Swiss-Prot
Match: HIPK1_RAT (Homeodomain-interacting protein kinase 1 OS=Rattus norvegicus GN=Hipk1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.279e-17
Identity = 48/101 (47.52%), Postives = 68/101 (67.33%), Query Frame = -1
Query:  185 HRDLKPQNL-LVDPLT--HQVKICDFGSAKQLIAGEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTP 478
            H DLKP+N+ LVDP+   ++VK+ DFGSA  +     + +Y+ SR+YRAPE+I G   +  +ID+WS GCV+AEL LG PL+PG +  DQ+  I +  G P
Sbjct:  313 HADLKPENIMLVDPVRQPYRVKVIDFGSASHVSKAVCS-TYLQSRYYRAPEIILGLP-FCEAIDMWSLGCVIAELFLGWPLYPGASEYDQIRYISQTQGLP 411          
BLAST of GE213291 vs. ExPASy Swiss-Prot
Match: HIPK1_MOUSE (Homeodomain-interacting protein kinase 1 OS=Mus musculus GN=Hipk1 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.279e-17
Identity = 48/101 (47.52%), Postives = 68/101 (67.33%), Query Frame = -1
Query:  185 HRDLKPQNL-LVDPLT--HQVKICDFGSAKQLIAGEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTP 478
            H DLKP+N+ LVDP+   ++VK+ DFGSA  +     + +Y+ SR+YRAPE+I G   +  +ID+WS GCV+AEL LG PL+PG +  DQ+  I +  G P
Sbjct:  313 HADLKPENIMLVDPVRQPYRVKVIDFGSASHVSKAVCS-TYLQSRYYRAPEIILGLP-FCEAIDMWSLGCVIAELFLGWPLYPGASEYDQIRYISQTQGLP 411          
BLAST of GE213291 vs. ExPASy Swiss-Prot
Match: HIPK1_HUMAN (Homeodomain-interacting protein kinase 1 OS=Homo sapiens GN=HIPK1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.279e-17
Identity = 48/101 (47.52%), Postives = 68/101 (67.33%), Query Frame = -1
Query:  185 HRDLKPQNL-LVDPLT--HQVKICDFGSAKQLIAGEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTP 478
            H DLKP+N+ LVDP+   ++VK+ DFGSA  +     + +Y+ SR+YRAPE+I G   +  +ID+WS GCV+AEL LG PL+PG +  DQ+  I +  G P
Sbjct:  313 HADLKPENIMLVDPVRQPYRVKVIDFGSASHVSKAVCS-TYLQSRYYRAPEIILGLP-FCEAIDMWSLGCVIAELFLGWPLYPGASEYDQIRYISQTQGLP 411          
BLAST of GE213291 vs. ExPASy Swiss-Prot
Match: Y8487_DICDI (Probable cyclin-dependent serine/threonine-protein kinase DDB_G0278487 OS=Dictyostelium discoideum GN=DDB_G0278487 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.181e-17
Identity = 62/173 (35.84%), Postives = 87/173 (50.29%), Query Frame = -1
Query:   23 QIFRGLAYIHTVPRVCHRDLKPQNLLVDPLTHQVKICDFGSAKQLIAGEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREEIRCMNPNYTDFR-FPQIKAHPWH----KVFHKRMPPEAIDLASRLLQYSPSLRCT 526
            Q+  G+  IH    V HRD+K  NLLV+     + I D G+A          S + + +YRAPEL+ G+T+Y   ID+WS GCVL EL+  +   PG +   QL  I K+ GTPT E    + PN +  + F QI   P +    +   K    + I+L   LL  +P  R T
Sbjct:  167 QLLEGINEIHNAG-VMHRDIKAANLLVNN-KGSLFIGDLGTATSYTKRSVFSSKVVTLWYRAPELLLGSTQYGPEIDMWSIGCVLIELVTSRNFLPGSSEQQQLEAICKLCGTPTDE----IWPNVSQLQNFNQISHLPVYPSRLRTVFKNFSNDFIELLEGLLTLNPKKRLT 333          
BLAST of GE213291 vs. ExPASy Swiss-Prot
Match: SSN3_GIBMO (Serine/threonine-protein kinase SSN3 OS=Gibberella moniliformis GN=SSN3 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.181e-17
Identity = 52/137 (37.96%), Postives = 82/137 (59.85%), Query Frame = -1
Query:  173 YQIFRGLAYIHTVPRVCHRDLKPQNLLVDPLTHQVKICDFGSAKQ-------LIAGEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAV-----------DQLVEIIKVLGTPTREE 529
            +Q+  G  Y+H +  V HRDLKP N++V   + +VKI D G A++       L +G+  +  I   +YRAPELI G+  YT +ID+W+ GC+ AELL  +P+F GE A            +Q+ +II+++G PT+++
Sbjct:  155 FQLLNGCQYLH-INWVLHRDLKPANIMVTS-SGEVKIGDLGLARRFDKPLHSLFSGDKVVVTI---WYRAPELILGSYHYTPAIDMWAVGCIFAELLSLRPIFKGEEAKMDSKKTVPFRRNQMQKIIEIMGVPTKDK 286          
BLAST of GE213291 vs. ExPASy Swiss-Prot
Match: SSN3_EMENI (Serine/threonine-protein kinase ssn3 OS=Emericella nidulans GN=ssn3 PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 2.181e-17
Identity = 66/211 (31.28%), Postives = 102/211 (48.34%), Query Frame = -1
Query:   23 YQIFRGLAYIHTVPRVCHRDLKPQNLLVDPLTHQVKICDFGSAK-------QLIAGEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAV-----------DQLVEIIKVLGTPTREEIRCM--NPNYTDFRFPQIKAHP-----------WHKVFHKR-----------MPPEAIDLASRLLQYSPSLRCT 529
            +Q+  GL Y+HT   V HRDLKP N+LV   +  ++I D G A+        L +G+  +  I   +YRAPEL+ G+  YT ++D+W+ GC+ AELL  +P+F GE A            +Q+++II ++G P R+    +   P Y+  +   +   P           W++   K               +  DL SRLL Y P+ R T
Sbjct:  153 FQLLNGLLYLHT-NWVLHRDLKPANILVTS-SGAIRIGDLGLARLFYKPLNSLFSGDKVVVTI---WYRAPELLMGSRHYTPAVDLWAVGCIFAELLSLRPIFKGEEAKMDSKKTVPFQRNQMMKIIDIMGLPHRDNWPGIVHMPEYSQLQSLAMSRAPNHISRTSNLGSWYQNCLKNGGYSVNSSVGTPGDDGFDLLSRLLDYDPTSRIT 358          
BLAST of GE213291 vs. ExPASy Swiss-Prot
Match: YP62_CAEEL (Putative serine/threonine-protein kinase B0495.2 OS=Caenorhabditis elegans GN=B0495.2 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.848e-17
Identity = 46/118 (38.98%), Postives = 75/118 (63.56%), Query Frame = -1
Query:  182 QIFRGLAYIHTVPRVCHRDLKPQNLLVDPLTHQ--VKICDFGSAKQLIAGEANI-SYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPT 526
            Q+  G+ ++H +  + HRDLK  NLL   ++H+  +KI DFG A++         S + + +YR+PEL+ G   Y+T +D+WS GC++AE +L +PLFPG   ++Q+ +I   +GTPT
Sbjct:  467 QLLSGIEHMHKL-WILHRDLKTSNLL---MSHKGILKIADFGLAREYGDPLKKFTSIVVTLWYRSPELLLGTRLYSTPVDMWSVGCIMAEFILLKPLFPGRGELEQIKKIFMEMGTPT 580          
BLAST of GE213291 vs. ExPASy Swiss-Prot
Match: PRP4B_DICDI (Serine/threonine-protein kinase prpf4B OS=Dictyostelium discoideum GN=prpf4B PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.848e-17
Identity = 47/120 (39.17%), Postives = 73/120 (60.83%), Query Frame = -1
Query:  167 QIFRGLAYIHTVPRVCHRDLKPQNLLVDPLTHQVKICDFGSAKQLIAGEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREEIR 526
            Q+F  L +I    ++ H D+KP N++V+   + +KI DFGSA ++   E    Y+ SRFYRAPE+I G  +Y  SID+WS GC LAE   G+ LFPG+   D +   ++  G  +++ ++
Sbjct:  602 QLFLALKHIKN-SKILHADIKPDNIVVNEAKNTIKIVDFGSAGEIHESEIT-PYLVSRFYRAPEIILGH-KYDYSIDVWSVGCCLAEFFTGKFLFPGKTNNDMIRLFMEYRGAFSKKMLK 718          
BLAST of GE213291 vs. ExPASy Swiss-Prot
Match: HIPK4_RAT (Homeodomain-interacting protein kinase 4 OS=Rattus norvegicus GN=Hipk4 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.848e-17
Identity = 52/120 (43.33%), Postives = 71/120 (59.17%), Query Frame = -1
Query:  185 QIFRGLAYIHTVPRVCHRDLKPQNLLVDPLTH---QVKICDFGSAKQLIAGEANI---SYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTP 526
            Q+ R LA +  +  + H DLKP+N+++   T    +VK+ DFGSA   I  E       YI SRFYRAPE++ G   +   +D+WS GCV+AEL LG PL+PG N  DQ+  I +  G P
Sbjct:  119 QVLRALARLKELA-IIHADLKPENIMLVDQTRCPFRVKVIDFGSAS--IFSEVRYVKEPYIQSRFYRAPEILLGLP-FCEKVDVWSLGCVMAELHLGWPLYPGNNEYDQVRYICETQGLP 234          
The following BLAST results are available for this feature:
BLAST of GE213291 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SSN3_ASPFU1.279e-1731.88Serine/threonine-protein kinase ssn3 OS=Aspergillu... [more]
HIPK1_RAT1.279e-1747.52Homeodomain-interacting protein kinase 1 OS=Rattus... [more]
HIPK1_MOUSE1.279e-1747.52Homeodomain-interacting protein kinase 1 OS=Mus mu... [more]
HIPK1_HUMAN1.279e-1747.52Homeodomain-interacting protein kinase 1 OS=Homo s... [more]
Y8487_DICDI2.181e-1735.84Probable cyclin-dependent serine/threonine-protein... [more]
SSN3_GIBMO2.181e-1737.96Serine/threonine-protein kinase SSN3 OS=Gibberella... [more]
SSN3_EMENI2.181e-1731.28Serine/threonine-protein kinase ssn3 OS=Emericella... [more]
YP62_CAEEL2.848e-1738.98Putative serine/threonine-protein kinase B0495.2 O... [more]
PRP4B_DICDI2.848e-1739.17Serine/threonine-protein kinase prpf4B OS=Dictyost... [more]
HIPK4_RAT2.848e-1743.33Homeodomain-interacting protein kinase 4 OS=Rattus... [more]

Pages

back to top
Properties
Property NameValue
Genbank description145 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.