GE213277

Overview
NameGE213277
Unique NameGE213277
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213277 vs. ExPASy Swiss-Prot
Match: EF1A_UNCMA (Elongation factor 1-alpha OS=Uncultured methanogenic archaeon RC-I GN=tuf PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.174e-45
Identity = 89/195 (45.64%), Postives = 125/195 (64.10%), Query Frame = -3
Query:  153 YKIGGIGTVPVGRVETGVLKPGMVVTFGPS----GLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 725
            Y I GIG VPVGRVETG++K G  V F P     G   EVKS+EMHHE + +ALPGDN+GFNV+ +    ++RG V  +    P   A  F +QV+++ HP  I  GY PV  CHT+ +A   ++++  +D ++G   E+ P F+K GDA +V + PT+P+V+E   + P LGRFA+RDM QTVA GV+ ++  K
Sbjct:  233 YTISGIGLVPVGRVETGIMKKGDKVIFRPGIDGVGHAGEVKSIEMHHEEIPQALPGDNIGFNVRGIEKNLIRRGDVCGHVDKQPT-VAVEFKAQVVVLQHPSAITAGYTPVFHCHTAQVACTLTQILATLDPKTGGVKEQNPPFIKTGDAAIVLIRPTRPLVIEKVKEIPQLGRFAIRDMGQTVAAGVVMDITPK 426          
BLAST of GE213277 vs. ExPASy Swiss-Prot
Match: EF1A_HALSA (Elongation factor 1-alpha OS=Halobacterium salinarium GN=tuf PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.417e-45
Identity = 90/190 (47.37%), Postives = 124/190 (65.26%), Query Frame = -3
Query:  156 YKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 725
            Y I GIGTVPVGR+ETGV+  G  V+F PS +  EVK++EMHHE +  A PGDNVGFNV+ +   D++RG V   + DDP   A  F +QV++M HP  I  GY PV   HT+ +A     +  K+D  SG+  E+ P F+++GDA +V + P KP+ +E  S+ P LG FAVRDM QT+A G + +V++
Sbjct:  232 YTISGIGTVPVGRIETGVMNTGDNVSFQPSDVGGEVKTIEMHHEEVPNAEPGDNVGFNVRGIGKDDIRRGDVCGPA-DDPPSVADTFQAQVVVMQHPSVITAGYTPVFHAHTAQVACTIESIDKKMDPASGETQEENPDFIQSGDAAVVTVRPQKPLSLEPSSEIPELGSFAVRDMGQTIAAGKVLDVDE 420          
BLAST of GE213277 vs. ExPASy Swiss-Prot
Match: EF1A_HALS3 (Elongation factor 1-alpha OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=tuf PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.417e-45
Identity = 90/190 (47.37%), Postives = 124/190 (65.26%), Query Frame = -3
Query:  156 YKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 725
            Y I GIGTVPVGR+ETGV+  G  V+F PS +  EVK++EMHHE +  A PGDNVGFNV+ +   D++RG V   + DDP   A  F +QV++M HP  I  GY PV   HT+ +A     +  K+D  SG+  E+ P F+++GDA +V + P KP+ +E  S+ P LG FAVRDM QT+A G + +V++
Sbjct:  232 YTISGIGTVPVGRIETGVMNTGDNVSFQPSDVGGEVKTIEMHHEEVPNAEPGDNVGFNVRGIGKDDIRRGDVCGPA-DDPPSVADTFQAQVVVMQHPSVITAGYTPVFHAHTAQVACTIESIDKKMDPASGETQEENPDFIQSGDAAVVTVRPQKPLSLEPSSEIPELGSFAVRDMGQTIAAGKVLDVDE 420          
BLAST of GE213277 vs. ExPASy Swiss-Prot
Match: EF1A_PYRCJ (Elongation factor 1-alpha OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=tuf PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.463e-45
Identity = 90/189 (47.62%), Postives = 128/189 (67.72%), Query Frame = -3
Query:  159 YKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVE 725
            + I G GTV VGRVETGVLK G  V   P     +V+S+E HH  L++A PGDNVG NV+ +  +D+KRG V     + P   A    ++++++ HP  IG GYAPV+  HT+ + V+  ELV+K+D R+G+ +E++P+F+K GD  +VK+ P KP+V E FSD+PPLGRFA+RDM +T+A G I  V+
Sbjct:  250 FSITGAGTVVVGRVETGVLKVGDKVVIVPPAKVGDVRSIETHHMKLEQAQPGDNVGVNVRGINKEDVKRGDVLGKVDNIPT-VAEEIVARIVVLWHPTAIGPGYAPVMHIHTATVPVQIVELVSKLDPRTGQAVEQKPQFIKQGDVAIVKIKPLKPVVAEKFSDFPPLGRFALRDMGRTIAAGQILEVK 437          
BLAST of GE213277 vs. ExPASy Swiss-Prot
Match: EF1A_PYRAR (Elongation factor 1-alpha OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=tuf PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.298e-44
Identity = 88/189 (46.56%), Postives = 128/189 (67.72%), Query Frame = -3
Query:  159 YKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVE 725
            + I G GTV VGRVETGVLK G  V   P     +V+S+E HH  L++A PGDNVG NV+ +  +D+KRG V     + P        ++++++ HP  IG GYAPV+  HT+ + V+ +EL++K+D R+G+ +E++P+F+K GD  +VK+ P KP+V E FSD+PPLGRFA+RDM +T+A G I  V+
Sbjct:  250 FSITGAGTVVVGRVETGVLKAGDRVVVVPPAKVGDVRSIETHHMKLEQAQPGDNVGVNVRGINKEDVKRGDVLGKVDNIPT-VTEEIIARIVVLWHPTAIGPGYAPVMHIHTATVPVQITELISKLDPRTGQAVEQKPQFIKQGDVAIVKIKPLKPVVAEKFSDFPPLGRFALRDMGRTIAAGQILEVK 437          
BLAST of GE213277 vs. ExPASy Swiss-Prot
Match: EF1A_NANEQ (Elongation factor 1-alpha OS=Nanoarchaeum equitans GN=tuf PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.934e-44
Identity = 91/193 (47.15%), Postives = 130/193 (67.36%), Query Frame = -3
Query:  153 IGGIGTVPVGRVETGVLKPG----MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 719
            I GIGTV  GRVETG LKPG    ++ +  P+G   EVKS+EMHH+ L+EALPGDN+GF+V+ +   D+ RG VA +  D+P   A    + + ++ HP  I  GYAPVL  HT+H+ V+F EL  K++  +G+ +E+ P+ L+ G+A +VK+ P KP+V+E F   P LGRFA+RDM +TVA+G+ + V  K
Sbjct:  236 IKGIGTVLTGRVETGKLKPGDKIIVLPSKKPNGAIGEVKSIEMHHKPLEEALPGDNIGFSVRGIEKGDVMRGDVAGHL-DNPPTVAEEIVALIHVIYHPSAITVGYAPVLHVHTAHVPVRFEELRGKVNPATGQVIEENPQALRPGEAAVVKLKPLKPVVIEPFDKIPQLGRFAIRDMGRTVAIGIARQVTPK 427          
BLAST of GE213277 vs. ExPASy Swiss-Prot
Match: EF1A_PYRIL (Elongation factor 1-alpha OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=tuf PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.875e-43
Identity = 88/189 (46.56%), Postives = 128/189 (67.72%), Query Frame = -3
Query:  159 YKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVE 725
            + I G GTV VGRVETGVLK G  V   P     +V+S+E HH  L++A PGDN+G NV+ ++ +D++RG V     + P   A    ++V+I+ HP  IG GYAPV+  HT+ + V+  ELV+K+D R+G+ +E++P+F+K GD  +VK+ P KP+V E FS++P LGRFA+RDM +T+A G I  V+
Sbjct:  250 FTITGAGTVVVGRVETGVLKVGDRVVIVPPAKVGDVRSIETHHMKLEQAQPGDNIGVNVRGISKEDVRRGDVLGKVDNVPT-VAEEIVARVVILWHPTAIGPGYAPVMHIHTATVPVQIVELVSKLDPRTGQAVEQKPQFIKQGDVAIVKIKPLKPVVAEKFSEFPALGRFALRDMGRTIAAGQIIEVK 437          
BLAST of GE213277 vs. ExPASy Swiss-Prot
Match: EF1A_CALMQ (Elongation factor 1-alpha OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=tuf PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.323e-40
Identity = 81/189 (42.86%), Postives = 121/189 (64.02%), Query Frame = -3
Query:  159 YKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVE 725
            + I G GTV  GRVE+GV+K G  +   P     +V+S+E HH  L+EA  GDNVG NV+    +DLKRG V  +  + P   A    +++ ++ HP  IG GY PV+  HT+ +  +  EL++++D  +G+ +E++P+F+K GD  MV++ P KP+VVE FSD P LGRF++RDM +TVA G I  ++
Sbjct:  249 FSITGAGTVITGRVESGVVKVGDTIVALPPAKVGDVRSIETHHMKLEEAKAGDNVGINVRGFERQDLKRGDVVGHLNNPPT-VAEEIVARIAVLEHPTTIGVGYTPVMHVHTATVPTQIIELISRLDPATGQTVEQKPQFIKRGDVAMVRLKPLKPVVVERFSDLPALGRFSLRDMGRTVAAGQIIEIK 436          
BLAST of GE213277 vs. ExPASy Swiss-Prot
Match: ERF3_CANMA (Eukaryotic peptide chain release factor GTP-binding subunit OS=Candida maltosa GN=SUP35 PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.825e-22
Identity = 61/187 (32.62%), Postives = 106/187 (56.68%), Query Frame = -3
Query:  171 KIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEA---LPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVI 722
            K+  +GTV  G++E+G +K G  +   P+    EV ++  ++E  QEA     G+ V   +K V  +DL+ G+V ++ K+ P +    F +Q+ I+     + NG++ V+  HT+   VKF EL  K+++ + ++ +K P F K G   +  +  ++P+  ET+ DYP LGRF +RD   T+A+G I
Sbjct:  525 KMKDLGTVVEGKIESGHVKKGTNLILMPNKTPVEVLTI--YNETEQEADTAFSGEQVRLKIKGVEEEDLQPGYVLTSPKN-PVKTVTKFEAQIAIVELKSILSNGFSCVMHLHTAIEEVKFVELKHKLEKGTNRKSKKPPAFAKKGMKIIAILEVSEPVCAETYKDYPQLGRFTLRDQGTTIAIGKI 708          
BLAST of GE213277 vs. ExPASy Swiss-Prot
Match: ERF3_ZYGRO (Eukaryotic peptide chain release factor GTP-binding subunit OS=Zygosaccharomyces rouxii GN=SUP35 PE=3 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 4.065e-22
Identity = 56/190 (29.47%), Postives = 109/190 (57.37%), Query Frame = -3
Query:  159 KIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHE-ALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVG-VIKNVE 722
            K+  +GT+  G++E+G ++ G      P+ +  E++++    E  +  A+ G+ V   +K V  +D+  GFV ++ K+ P +    F +QV I+     + +G++ V+  HT+   V+ ++L+ K++R + ++ +K P F K G   +  +   +P+ VET+ DYP LGRF +RD   T+A+G ++K +E
Sbjct:  474 KMRDMGTIVEGKIESGHIRKGHSTLLMPNKIPVEIQNIYNETENEVDMAICGEQVKLKIKGVEEEDIAPGFVLTSPKN-PVKNVTRFVAQVAIVELKSILSSGFSCVMHVHTAIEEVRITKLLHKLERGTNRKSKKPPAFAKKGMKIIAVLETERPVCVETYQDYPQLGRFTLRDQGTTIAIGKIVKIIE 662          
The following BLAST results are available for this feature:
BLAST of GE213277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 183
Match NameE-valueIdentityDescription
EF1A_UNCMA1.174e-4545.64Elongation factor 1-alpha OS=Uncultured methanogen... [more]
EF1A_HALSA3.417e-4547.37Elongation factor 1-alpha OS=Halobacterium salinar... [more]
EF1A_HALS33.417e-4547.37Elongation factor 1-alpha OS=Halobacterium salinar... [more]
EF1A_PYRCJ4.463e-4547.62Elongation factor 1-alpha OS=Pyrobaculum calidifon... [more]
EF1A_PYRAR1.298e-4446.56Elongation factor 1-alpha OS=Pyrobaculum arsenatic... [more]
EF1A_NANEQ4.934e-4447.15Elongation factor 1-alpha OS=Nanoarchaeum equitans... [more]
EF1A_PYRIL1.875e-4346.56Elongation factor 1-alpha OS=Pyrobaculum islandicu... [more]
EF1A_CALMQ4.323e-4042.86Elongation factor 1-alpha OS=Caldivirga maquilinge... [more]
ERF3_CANMA1.825e-2232.62Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_ZYGRO4.065e-2229.47Eukaryotic peptide chain release factor GTP-bindin... [more]

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Properties
Property NameValue
Genbank description129 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.