FC871445

Overview
NameFC871445
Unique NameFC871445
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871445 vs. ExPASy Swiss-Prot
Match: TPIS_CHICK (Triosephosphate isomerase OS=Gallus gallus GN=TPI1 PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 2.868e-34
Identity = 74/97 (76.29%), Postives = 80/97 (82.47%), Query Frame = 1
Query:   25 NLYDQSKCHPVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVASSTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 315
            N+ D SK   VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK +VS  VA STRIIYGGSV G NCKELA+Q DVDGFLVGGASLKPEF+DII +
Sbjct:  153 NVKDWSK---VVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSHVSDAVAQSTRIIYGGSVTGGNCKELASQHDVDGFLVGGASLKPEFVDIINA 246          
BLAST of FC871445 vs. ExPASy Swiss-Prot
Match: TPIS_XENLA (Triosephosphate isomerase OS=Xenopus laevis GN=tpi1 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.424e-33
Identity = 71/97 (73.20%), Postives = 79/97 (81.44%), Query Frame = 1
Query:   25 NLYDQSKCHPVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVASSTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 315
            N+ D SK   VVLAYEPVWAIGTGK ATP QAQEVH +LR+W+K NVS  VA S RIIYGGSV G  C+ELA QPD+DGFLVGGASLKPEFI+II +
Sbjct:  153 NVKDWSK---VVLAYEPVWAIGTGKTATPEQAQEVHKKLREWVKTNVSEGVAQSVRIIYGGSVTGGTCRELAGQPDIDGFLVGGASLKPEFIEIINA 246          
BLAST of FC871445 vs. ExPASy Swiss-Prot
Match: TPISB_DANRE (Triosephosphate isomerase B OS=Danio rerio GN=tpi1b PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.428e-33
Identity = 72/97 (74.23%), Postives = 80/97 (82.47%), Query Frame = 1
Query:   25 NLYDQSKCHPVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVASSTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 315
            N+ D SK   VVLAYEPVWAIGTGK A+P QAQEVH +LR+WLK NVS  VA+S RIIYGGSV G  CKELA+Q D+DGFLVGGASLKPEFIDII +
Sbjct:  153 NVKDWSK---VVLAYEPVWAIGTGKTASPQQAQEVHDKLRQWLKTNVSEAVANSVRIIYGGSVTGGTCKELASQKDLDGFLVGGASLKPEFIDIINA 246          
BLAST of FC871445 vs. ExPASy Swiss-Prot
Match: TPIC_SPIOL (Triosephosphate isomerase, chloroplastic OS=Spinacia oleracea GN=TPIP1 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.428e-33
Identity = 71/93 (76.34%), Postives = 76/93 (81.72%), Query Frame = 1
Query:   55 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVASSTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKK 330
            VV+AYEPVWAIGTGKVA+P QAQEVH  +R WLK NVS EVAS TRIIYGGSVNG NC ELA Q D+DGFLVGGASLK PEF  I+ S T KK
Sbjct:  227 VVVAYEPVWAIGTGKVASPDQAQEVHVAVRDWLKKNVSEEVASKTRIIYGGSVNGGNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTAKK 319          
BLAST of FC871445 vs. ExPASy Swiss-Prot
Match: TPISA_DANRE (Triosephosphate isomerase A OS=Danio rerio GN=tpi1a PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.171e-33
Identity = 69/87 (79.31%), Postives = 74/87 (85.06%), Query Frame = 1
Query:   55 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVASSTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 315
            VVLAYEPVWAIGTGK A+P QAQEVH +LR WL+ NVS  VA S RIIYGGSV G NCKELAAQ DVDGFLVGGASLKPEF+DII +
Sbjct:  160 VVLAYEPVWAIGTGKTASPEQAQEVHEKLRGWLRANVSDAVADSVRIIYGGSVTGGNCKELAAQADVDGFLVGGASLKPEFVDIINA 246          
BLAST of FC871445 vs. ExPASy Swiss-Prot
Match: TPIS_ORYLA (Triosephosphate isomerase OS=Oryzias latipes GN=tpi1 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 5.410e-33
Identity = 71/101 (70.30%), Postives = 79/101 (78.22%), Query Frame = 1
Query:   13 VFFTNLYDQSKCHPVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVASSTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 315
            V   N+ D  K   VVLAYEPVWAIGTGK ATP QAQEVH +LR W + N+S EV+ S RIIYGGSV  ANC+ELA+Q DVDGFLVGGASLKPEFIDII +
Sbjct:  149 VIAENVMDWEK---VVLAYEPVWAIGTGKTATPEQAQEVHEKLRAWFRANISEEVSDSLRIIYGGSVTAANCRELASQTDVDGFLVGGASLKPEFIDIINA 246          
BLAST of FC871445 vs. ExPASy Swiss-Prot
Match: TPIS_LATCH (Triosephosphate isomerase OS=Latimeria chalumnae PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 7.065e-33
Identity = 65/83 (78.31%), Postives = 74/83 (89.16%), Query Frame = 1
Query:   55 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVASSTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFID 303
            VVLAYEPVWAIGTGK A+P Q+QE+H +LRKWLK+NVS  VA S RIIYGGSV GA CKELA++PDVDGFLVGGASLKPEF++
Sbjct:  159 VVLAYEPVWAIGTGKTASPQQSQELHGKLRKWLKENVSETVADSVRIIYGGSVTGATCKELASEPDVDGFLVGGASLKPEFVE 241          
BLAST of FC871445 vs. ExPASy Swiss-Prot
Match: TPIS_PIG (Triosephosphate isomerase OS=Sus scrofa GN=TPI1 PE=2 SV=4)

HSP 1 Score: 139.813 bits (351), Expect = 9.227e-33
Identity = 72/101 (71.29%), Postives = 79/101 (78.22%), Query Frame = 1
Query:   13 VFFTNLYDQSKCHPVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVASSTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 315
            V   N+ D +K   VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK +V   VA STRIIYGGSV GA CKELA+QPDVDGF V GASLKPEF+DII +
Sbjct:  150 VIADNVKDWNK---VVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKTHVPEAVAHSTRIIYGGSVTGATCKELASQPDVDGFRVSGASLKPEFVDIINA 247          
BLAST of FC871445 vs. ExPASy Swiss-Prot
Match: TPIS_DROYA (Triosephosphate isomerase OS=Drosophila yakuba GN=Tpi PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.056e-32
Identity = 66/87 (75.86%), Postives = 75/87 (86.21%), Query Frame = 1
Query:   55 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVASSTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 315
            VV+AYEPVWAIGTGK ATP QAQEVHA LR+WL DN+S EV++S RI YGGSV  AN KELA +PD+DGFLVGGASLKPEF+DII +
Sbjct:  159 VVVAYEPVWAIGTGKTATPDQAQEVHAFLRQWLSDNISKEVSASLRIQYGGSVTAANAKELAKKPDIDGFLVGGASLKPEFVDIINA 245          
BLAST of FC871445 vs. ExPASy Swiss-Prot
Match: TPIS_DROSI (Triosephosphate isomerase OS=Drosophila simulans GN=Tpi PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.056e-32
Identity = 66/87 (75.86%), Postives = 75/87 (86.21%), Query Frame = 1
Query:   55 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVASSTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 315
            VV+AYEPVWAIGTGK ATP QAQEVHA LR+WL DN+S EV++S RI YGGSV  AN KELA +PD+DGFLVGGASLKPEF+DII +
Sbjct:  159 VVVAYEPVWAIGTGKTATPDQAQEVHAFLRQWLSDNISKEVSASLRIQYGGSVTAANAKELAKKPDIDGFLVGGASLKPEFVDIINA 245          
The following BLAST results are available for this feature:
BLAST of FC871445 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_CHICK2.868e-3476.29Triosephosphate isomerase OS=Gallus gallus GN=TPI1... [more]
TPIS_XENLA1.424e-3373.20Triosephosphate isomerase OS=Xenopus laevis GN=tpi... [more]
TPISB_DANRE2.428e-3374.23Triosephosphate isomerase B OS=Danio rerio GN=tpi1... [more]
TPIC_SPIOL2.428e-3376.34Triosephosphate isomerase, chloroplastic OS=Spinac... [more]
TPISA_DANRE3.171e-3379.31Triosephosphate isomerase A OS=Danio rerio GN=tpi1... [more]
TPIS_ORYLA5.410e-3370.30Triosephosphate isomerase OS=Oryzias latipes GN=tp... [more]
TPIS_LATCH7.065e-3378.31Triosephosphate isomerase OS=Latimeria chalumnae P... [more]
TPIS_PIG9.227e-3371.29Triosephosphate isomerase OS=Sus scrofa GN=TPI1 PE... [more]
TPIS_DROYA2.056e-3275.86Triosephosphate isomerase OS=Drosophila yakuba GN=... [more]
TPIS_DROSI2.056e-3275.86Triosephosphate isomerase OS=Drosophila simulans G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1AC12FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1AC12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871445 ID=FC871445; Name=FC871445; organism=Citrus sinensis; type=EST; length=579bp
CATTCTTGGATAGTGTTCTTTACTAATTTATATGATCAATCCAAGTGTCA
TCCTGTTGTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGG
TTGCAACCCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGG
CTTAAAGACAATGTCAGTGCTGAAGTTGCATCATCAACTAGAATCATCTA
CGGAGGTTCTGTAAATGGAGCAAATTGCAAAGAATTGGCAGCACAACCTG
ATGTGGATGGATTTTTGGTTGGTGGAGCTTCTCTAAAGCCGGAGTTCATC
GATATTATCAAGTCTGCCACAGTGAAGAAGAATTGAAGTTAAAGACCAAG
CTACTCGGCTTGCTGATGCCTGCAGTTTTCTCTGTTATGCGTTCTGGAAA
CTAGCGTTGTAATTTTTGTGGTCTGTTAAGTGTTACCAACGCCTTTCCAG
TATAATAAGTTAAATCTTCAGAATTCTTAAGAATCTCTTTCCTATTTCAG
TGGGGATTTGAAACTTATCATTGTGGATTTAATAAATGGTTGCTTTTCCC
TTCTTGCAAAATAAAAAAAAAAAAAAAAA
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