FC871445

Overview
NameFC871445
Unique NameFC871445
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871445 vs. ExPASy Swiss-Prot
Match: TPIS_CULTA (Triosephosphate isomerase OS=Culex tarsalis GN=Tpi PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 2.056e-32
Identity = 64/87 (73.56%), Postives = 76/87 (87.36%), Query Frame = 1
Query:   55 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVASSTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 315
            VV+AYEPVWAIGTGK A+P QAQEVHA LRKW  +NVSA+V+++ RI YGGSV  ANC+ELAA+PD+DGFLVGGASLKPEFI I+ +
Sbjct:  159 VVIAYEPVWAIGTGKTASPEQAQEVHAALRKWFTENVSADVSAAIRIQYGGSVTAANCRELAAKPDIDGFLVGGASLKPEFIQIVNA 245          
BLAST of FC871445 vs. ExPASy Swiss-Prot
Match: TPIS_STELP (Triosephosphate isomerase, cytosolic OS=Stellaria longipes GN=TPI PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.685e-32
Identity = 72/93 (77.42%), Postives = 75/93 (80.65%), Query Frame = 1
Query:   55 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVASSTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKK 330
            VV+AYEPVWAIGTGKVA+P QAQEVH  +R WLK NVS EVAS TRIIYGGSVNG N   LAAQ DVDGFLVGGASLK PEF  II S T KK
Sbjct:  162 VVVAYEPVWAIGTGKVASPEQAQEVHVAVRDWLKTNVSEEVASKTRIIYGGSVNGGNSLALAAQEDVDGFLVGGASLKGPEFATIINSVTAKK 254          
BLAST of FC871445 vs. ExPASy Swiss-Prot
Match: TPIC_SECCE (Triosephosphate isomerase, chloroplastic OS=Secale cereale PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.579e-32
Identity = 69/93 (74.19%), Postives = 77/93 (82.80%), Query Frame = 1
Query:   55 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVASSTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKK 330
            VV+AYEPVWAIGTGKVA+P QAQEVHA +R WLK NVSA+VAS+ RIIYGGSVN ANC ELA + D+DGFLVGGASLK P+F  I  S T KK
Sbjct:  203 VVIAYEPVWAIGTGKVASPEQAQEVHAAVRDWLKTNVSADVASTVRIIYGGSVNAANCAELAKKEDIDGFLVGGASLKGPDFATICNSVTSKK 295          
BLAST of FC871445 vs. ExPASy Swiss-Prot
Match: TPIC_FRAAN (Triosephosphate isomerase, chloroplastic OS=Fragaria ananassa GN=TPI PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.579e-32
Identity = 68/93 (73.12%), Postives = 77/93 (82.80%), Query Frame = 1
Query:   55 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVASSTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKK 330
            +V+AYEPVWAIGTGKVA+P QAQEVH  +R+WLK NVSAEVAS TRIIYGGSVNG N  ELA + D+DGFLVGGASLK PEF  I+ + T KK
Sbjct:  219 IVVAYEPVWAIGTGKVASPQQAQEVHVAVREWLKKNVSAEVASKTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKGPEFATIVNAVTSKK 311          
BLAST of FC871445 vs. ExPASy Swiss-Prot
Match: TPIS_DROME (Triosephosphate isomerase OS=Drosophila melanogaster GN=Tpi PE=1 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 5.981e-32
Identity = 65/87 (74.71%), Postives = 75/87 (86.21%), Query Frame = 1
Query:   55 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVASSTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 315
            VV+AYEPVWAIGTG+ ATP QAQEVHA LR+WL DN+S EV++S RI YGGSV  AN KELA +PD+DGFLVGGASLKPEF+DII +
Sbjct:  159 VVVAYEPVWAIGTGQTATPDQAQEVHAFLRQWLSDNISKEVSASLRIQYGGSVTAANAKELAKKPDIDGFLVGGASLKPEFVDIINA 245          
BLAST of FC871445 vs. ExPASy Swiss-Prot
Match: TPIS_EMENI (Triosephosphate isomerase OS=Emericella nidulans GN=tpiA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 7.811e-32
Identity = 63/87 (72.41%), Postives = 75/87 (86.21%), Query Frame = 1
Query:   55 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVASSTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 315
            VV+AYEPVWAIGTGKVAT  QAQEVH+ +RKWLKD +SAE A +TRIIYGGSV+  NCK+LA + D+DGFLVGGASLKP F+DI+ +
Sbjct:  161 VVIAYEPVWAIGTGKVATTEQAQEVHSAIRKWLKDAISAEAAENTRIIYGGSVSEKNCKDLAKEADIDGFLVGGASLKPAFVDIVNA 247          
BLAST of FC871445 vs. ExPASy Swiss-Prot
Match: TPIS_NEUCR (Triosephosphate isomerase OS=Neurospora crassa GN=tpi-1 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.332e-31
Identity = 63/87 (72.41%), Postives = 73/87 (83.91%), Query Frame = 1
Query:   55 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVASSTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 315
            VV+AYEP+WAIGTG VAT  QAQEVHA +R WLK NVS +VA  TRI+YGGSVN  NCK+LA + D+DGFLVGGASLKPEF+DII +
Sbjct:  160 VVIAYEPIWAIGTGLVATKEQAQEVHAAIRSWLKQNVSDKVAEETRILYGGSVNAKNCKDLAKEQDIDGFLVGGASLKPEFVDIINA 246          
BLAST of FC871445 vs. ExPASy Swiss-Prot
Match: TPIS_PARBA (Triosephosphate isomerase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=TPI1 PE=1 SV=3)

HSP 1 Score: 135.576 bits (340), Expect = 1.740e-31
Identity = 62/87 (71.26%), Postives = 73/87 (83.91%), Query Frame = 1
Query:   55 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVASSTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 315
            VV+AYEP+WAIGTGKVAT  QAQEVHA +RKWL + +S E A + R+IYGGSV   NC++LAAQPDVDGFLVGGASLKP F+DII +
Sbjct:  161 VVIAYEPIWAIGTGKVATTEQAQEVHASIRKWLNEKISPEAAENIRVIYGGSVTENNCRDLAAQPDVDGFLVGGASLKPAFVDIINA 247          
BLAST of FC871445 vs. ExPASy Swiss-Prot
Match: TPIC_ARATH (Triosephosphate isomerase, chloroplastic OS=Arabidopsis thaliana GN=TIM PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.740e-31
Identity = 68/93 (73.12%), Postives = 75/93 (80.65%), Query Frame = 1
Query:   55 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVASSTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKK 330
            +V+AYEPVWAIGTGKVA+P QAQEVH  +R WLK NVS EVAS TRIIYGGSVNG N  ELA + D+DGFLVGGASLK PEF  I+ S T KK
Sbjct:  220 IVVAYEPVWAIGTGKVASPQQAQEVHVAVRGWLKKNVSEEVASKTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKGPEFATIVNSVTSKK 312          
BLAST of FC871445 vs. ExPASy Swiss-Prot
Match: TPIS_SCHJA (Triosephosphate isomerase OS=Schistosoma japonicum GN=TPI PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 8.637e-31
Identity = 66/87 (75.86%), Postives = 70/87 (80.46%), Query Frame = 1
Query:   55 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVASSTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 315
            VV+AYEPVWAIGTGKVA+P QAQEVH  LRKW K N  + V    RIIYGGSV  ANCKELA Q DVDGFLVGGASLKPEFIDI K+
Sbjct:  164 VVVAYEPVWAIGTGKVASPGQAQEVHNFLRKWFKTNTPSGVDQQIRIIYGGSVTAANCKELAQQHDVDGFLVGGASLKPEFIDICKA 250          
The following BLAST results are available for this feature:
BLAST of FC871445 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_CULTA2.056e-3273.56Triosephosphate isomerase OS=Culex tarsalis GN=Tpi... [more]
TPIS_STELP2.685e-3277.42Triosephosphate isomerase, cytosolic OS=Stellaria ... [more]
TPIC_SECCE4.579e-3274.19Triosephosphate isomerase, chloroplastic OS=Secale... [more]
TPIC_FRAAN4.579e-3273.12Triosephosphate isomerase, chloroplastic OS=Fragar... [more]
TPIS_DROME5.981e-3274.71Triosephosphate isomerase OS=Drosophila melanogast... [more]
TPIS_EMENI7.811e-3272.41Triosephosphate isomerase OS=Emericella nidulans G... [more]
TPIS_NEUCR1.332e-3172.41Triosephosphate isomerase OS=Neurospora crassa GN=... [more]
TPIS_PARBA1.740e-3171.26Triosephosphate isomerase OS=Paracoccidioides bras... [more]
TPIC_ARATH1.740e-3173.12Triosephosphate isomerase, chloroplastic OS=Arabid... [more]
TPIS_SCHJA8.637e-3175.86Triosephosphate isomerase OS=Schistosoma japonicum... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1AC12FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1AC12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871445 ID=FC871445; Name=FC871445; organism=Citrus sinensis; type=EST; length=579bp
CATTCTTGGATAGTGTTCTTTACTAATTTATATGATCAATCCAAGTGTCA
TCCTGTTGTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGG
TTGCAACCCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGG
CTTAAAGACAATGTCAGTGCTGAAGTTGCATCATCAACTAGAATCATCTA
CGGAGGTTCTGTAAATGGAGCAAATTGCAAAGAATTGGCAGCACAACCTG
ATGTGGATGGATTTTTGGTTGGTGGAGCTTCTCTAAAGCCGGAGTTCATC
GATATTATCAAGTCTGCCACAGTGAAGAAGAATTGAAGTTAAAGACCAAG
CTACTCGGCTTGCTGATGCCTGCAGTTTTCTCTGTTATGCGTTCTGGAAA
CTAGCGTTGTAATTTTTGTGGTCTGTTAAGTGTTACCAACGCCTTTCCAG
TATAATAAGTTAAATCTTCAGAATTCTTAAGAATCTCTTTCCTATTTCAG
TGGGGATTTGAAACTTATCATTGTGGATTTAATAAATGGTTGCTTTTCCC
TTCTTGCAAAATAAAAAAAAAAAAAAAAA
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