FC871445

Overview
NameFC871445
Unique NameFC871445
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871445 vs. ExPASy Swiss-Prot
Match: TPIS_ZYGBA (Triosephosphate isomerase OS=Zygosaccharomyces bailii GN=TPI1 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.434e-25
Identity = 54/87 (62.07%), Postives = 64/87 (73.56%), Query Frame = 1
Query:   55 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVASSTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 315
            VV+AYEPVWAIGTG  ATP  AQE+H  +R++L   +  + A  TRI+YGGS NG N      +PDVDGFLVGGASLKPEF+DII S
Sbjct:  160 VVIAYEPVWAIGTGLAATPEDAQEIHHSIREFLAKKLGEKTAQETRILYGGSANGKNAVTFKDKPDVDGFLVGGASLKPEFVDIINS 246          
BLAST of FC871445 vs. ExPASy Swiss-Prot
Match: TPIS_YEAST (Triosephosphate isomerase OS=Saccharomyces cerevisiae GN=TPI1 PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 4.152e-25
Identity = 54/87 (62.07%), Postives = 65/87 (74.71%), Query Frame = 1
Query:   55 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVASSTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 315
            VV+AYEPVWAIGTG  ATP  AQ++HA +RK+L   +  + AS  RI+YGGS NG+N      + DVDGFLVGGASLKPEF+DII S
Sbjct:  160 VVVAYEPVWAIGTGLAATPEDAQDIHASIRKFLASKLGDKAASELRILYGGSANGSNAVTFKDKADVDGFLVGGASLKPEFVDIINS 246          
BLAST of FC871445 vs. ExPASy Swiss-Prot
Match: TPIS_YARLI (Triosephosphate isomerase OS=Yarrowia lipolytica GN=TPI1 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.208e-24
Identity = 56/87 (64.37%), Postives = 65/87 (74.71%), Query Frame = 1
Query:   55 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVASSTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 315
            VV+AYEPVWAIGTG  AT   AQ++H E+R +LKD + A+ A   RIIYGGSVNG N      + DVDGFLVGGASLKPEF+DII S
Sbjct:  160 VVIAYEPVWAIGTGLAATAEDAQQIHHEIRAYLKDKIGAQ-ADKVRIIYGGSVNGKNSGTFKDKSDVDGFLVGGASLKPEFVDIINS 245          
BLAST of FC871445 vs. ExPASy Swiss-Prot
Match: TPIS_ASHGO (Triosephosphate isomerase OS=Ashbya gossypii GN=TPI1 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.208e-24
Identity = 53/87 (60.92%), Postives = 65/87 (74.71%), Query Frame = 1
Query:   55 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVASSTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 315
            VV+AYEPVWAIGTG  AT   AQ++HA +R +L +  S +VA + RI++GGS NGAN      + DVDGFLVGGASLKPEF+DII S
Sbjct:  160 VVIAYEPVWAIGTGLAATAEDAQDIHAAIRDFLAERTSRDVADAVRILFGGSANGANAASFRDKADVDGFLVGGASLKPEFVDIINS 246          
BLAST of FC871445 vs. ExPASy Swiss-Prot
Match: TPIS_KLULA (Triosephosphate isomerase OS=Kluyveromyces lactis GN=TPI1 PE=3 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 2.691e-24
Identity = 53/87 (60.92%), Postives = 65/87 (74.71%), Query Frame = 1
Query:   55 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVASSTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 315
            VV+AYEPVWAIGTG  AT   AQ++H  +R++L + +S +VA S RI+YGGS NG N      + DVDGFLVGGASLKPEF+DII S
Sbjct:  160 VVVAYEPVWAIGTGLAATAEDAQDIHHSIREFLAEKLSRDVADSVRILYGGSANGKNAVTFKDKADVDGFLVGGASLKPEFVDIINS 246          
BLAST of FC871445 vs. ExPASy Swiss-Prot
Match: TPIS_CHLT3 (Triosephosphate isomerase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=tpiA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.691e-24
Identity = 58/89 (65.17%), Postives = 67/89 (75.28%), Query Frame = 1
Query:   55 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVASSTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 318
            VV+AYEPVWAIGTGK ATP QAQEVHA +R  +KD    EVA+  RI YGGSV  +N KEL   PD+DG L+GGASL  E F++IIKSA
Sbjct:  163 VVIAYEPVWAIGTGKTATPEQAQEVHAFIRGIVKDMFGEEVANELRIQYGGSVKTSNAKELFGMPDIDGGLIGGASLNAEDFVEIIKSA 251          
BLAST of FC871445 vs. ExPASy Swiss-Prot
Match: TPIS_CANGA (Triosephosphate isomerase OS=Candida glabrata GN=TPI1 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.515e-24
Identity = 52/87 (59.77%), Postives = 63/87 (72.41%), Query Frame = 1
Query:   55 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVASSTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 315
            VV+AYEPVWAIGTG  AT   AQ++H  +R +L + +  + A  TRI+YGGS NGAN      + DVDGFLVGGASLKPEF+DII S
Sbjct:  160 VVIAYEPVWAIGTGLAATAEDAQDIHHSIRSYLAEKLGKDTAEKTRILYGGSANGANAGTFKDKADVDGFLVGGASLKPEFVDIINS 246          
BLAST of FC871445 vs. ExPASy Swiss-Prot
Match: TPIS_CULPI (Triosephosphate isomerase (Fragment) OS=Culex pipiens GN=Tpi PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.075e-23
Identity = 50/66 (75.76%), Postives = 57/66 (86.36%), Query Frame = 1
Query:   55 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVASSTRIIYGGSVNGANCKELAAQPD 252
            VV+AYEPVWAIGTGK ATP QAQEVHA LRKW  +NVSA+V+S+ RI YGGSV  ANC+ELAA+PD
Sbjct:  141 VVIAYEPVWAIGTGKTATPEQAQEVHAALRKWFTENVSADVSSAIRIQYGGSVTAANCRELAAKPD 206          
BLAST of FC871445 vs. ExPASy Swiss-Prot
Match: TPIS_AEDTO (Triosephosphate isomerase (Fragment) OS=Aedes togoi GN=Tpi PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.628e-23
Identity = 50/66 (75.76%), Postives = 56/66 (84.85%), Query Frame = 1
Query:   55 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVASSTRIIYGGSVNGANCKELAAQPD 252
            VV+AYEPVWAIGTGK ATP QAQEVH  LRKW  DNVSA+V++S RI YGGSV  ANC+ELAA+PD
Sbjct:  141 VVVAYEPVWAIGTGKTATPEQAQEVHVALRKWFTDNVSADVSASIRIQYGGSVTAANCRELAAKPD 206          
BLAST of FC871445 vs. ExPASy Swiss-Prot
Match: PGKT_THEMA (Bifunctional PGK/TIM OS=Thermotoga maritima GN=pgk/tpi PE=1 SV=4)

HSP 1 Score: 106.301 bits (264), Expect = 1.131e-22
Identity = 53/93 (56.99%), Postives = 65/93 (69.89%), Query Frame = 1
Query:   34 DQSKCHPVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVASSTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIK 312
            D+ +   VV+AYEPVWAIGTG+VATP QAQEVHA +RK L +    E A S RI+YGGS+   N   L  Q D+DG LVGGASLK  FI++ +
Sbjct:  555 DKEEAKRVVIAYEPVWAIGTGRVATPQQAQEVHAFIRKLLSEMYDEETAGSIRILYGGSIKPDNFLGLIVQKDIDGGLVGGASLKESFIELAR 647          
The following BLAST results are available for this feature:
BLAST of FC871445 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_ZYGBA2.434e-2562.07Triosephosphate isomerase OS=Zygosaccharomyces bai... [more]
TPIS_YEAST4.152e-2562.07Triosephosphate isomerase OS=Saccharomyces cerevis... [more]
TPIS_YARLI1.208e-2464.37Triosephosphate isomerase OS=Yarrowia lipolytica G... [more]
TPIS_ASHGO1.208e-2460.92Triosephosphate isomerase OS=Ashbya gossypii GN=TP... [more]
TPIS_KLULA2.691e-2460.92Triosephosphate isomerase OS=Kluyveromyces lactis ... [more]
TPIS_CHLT32.691e-2465.17Triosephosphate isomerase OS=Chloroherpeton thalas... [more]
TPIS_CANGA3.515e-2459.77Triosephosphate isomerase OS=Candida glabrata GN=T... [more]
TPIS_CULPI5.075e-2375.76Triosephosphate isomerase (Fragment) OS=Culex pipi... [more]
TPIS_AEDTO6.628e-2375.76Triosephosphate isomerase (Fragment) OS=Aedes togo... [more]
PGKT_THEMA1.131e-2256.99Bifunctional PGK/TIM OS=Thermotoga maritima GN=pgk... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1AC12FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1AC12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871445 ID=FC871445; Name=FC871445; organism=Citrus sinensis; type=EST; length=579bp
CATTCTTGGATAGTGTTCTTTACTAATTTATATGATCAATCCAAGTGTCA
TCCTGTTGTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGG
TTGCAACCCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGG
CTTAAAGACAATGTCAGTGCTGAAGTTGCATCATCAACTAGAATCATCTA
CGGAGGTTCTGTAAATGGAGCAAATTGCAAAGAATTGGCAGCACAACCTG
ATGTGGATGGATTTTTGGTTGGTGGAGCTTCTCTAAAGCCGGAGTTCATC
GATATTATCAAGTCTGCCACAGTGAAGAAGAATTGAAGTTAAAGACCAAG
CTACTCGGCTTGCTGATGCCTGCAGTTTTCTCTGTTATGCGTTCTGGAAA
CTAGCGTTGTAATTTTTGTGGTCTGTTAAGTGTTACCAACGCCTTTCCAG
TATAATAAGTTAAATCTTCAGAATTCTTAAGAATCTCTTTCCTATTTCAG
TGGGGATTTGAAACTTATCATTGTGGATTTAATAAATGGTTGCTTTTCCC
TTCTTGCAAAATAAAAAAAAAAAAAAAAA
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