FC871445

Overview
NameFC871445
Unique NameFC871445
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871445 vs. ExPASy Swiss-Prot
Match: TPIS_KLUMA (Triosephosphate isomerase OS=Kluyveromyces marxianus GN=TPI1 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.928e-22
Identity = 51/87 (58.62%), Postives = 61/87 (70.11%), Query Frame = 1
Query:   55 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVASSTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 315
            VV+AYEPVWAIGTG  AT   AQ +H  +R++L   +S + A   RI+YGGS NG N      + DVDGFLVGGASLKPEF+DII S
Sbjct:  160 VVVAYEPVWAIGTGLAATSDDAQAIHHSIREFLAKKLSKDTAEKIRILYGGSANGKNAVTFKDKADVDGFLVGGASLKPEFVDIINS 246          
BLAST of FC871445 vs. ExPASy Swiss-Prot
Match: TPIS_ANOME (Triosephosphate isomerase (Fragment) OS=Anopheles merus GN=Tpi PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.290e-22
Identity = 48/66 (72.73%), Postives = 56/66 (84.85%), Query Frame = 1
Query:   55 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVASSTRIIYGGSVNGANCKELAAQPD 252
            VV+AYEPVWAIGTGK ATP QAQEVHA LRKW  +NVSA+V+++ RI YGGSV  ANC+ELA +PD
Sbjct:  141 VVIAYEPVWAIGTGKTATPEQAQEVHAALRKWFTENVSADVSNAIRIQYGGSVTAANCRELAGKPD 206          
BLAST of FC871445 vs. ExPASy Swiss-Prot
Match: TPIS_COLP3 (Triosephosphate isomerase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.328e-22
Identity = 55/96 (57.29%), Postives = 66/96 (68.75%), Query Frame = 1
Query:   43 KCHPVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVASSTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKK 330
            K   VV+AYEPVWAIGTGK A+ A AQE H  +RK+L    + +VA    ++YGGSVN ANC+EL AQ D+DG L+GGASLK E   II SA   K
Sbjct:  162 KFKDVVIAYEPVWAIGTGKTASSAMAQETHQFIRKFLAQQ-NEQVADKVPLLYGGSVNAANCEELFAQTDIDGGLIGGASLKAEQFKIICSAAKGK 256          
BLAST of FC871445 vs. ExPASy Swiss-Prot
Match: TPIS_BACFR (Triosephosphate isomerase OS=Bacteroides fragilis GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.328e-22
Identity = 53/92 (57.61%), Postives = 66/92 (71.74%), Query Frame = 1
Query:   13 VFFTNLYDQSKCHPVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVASSTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 288
            VF  +  D SK   +VLAYEPVWAIGTGK A+PAQAQE+HA +R  + +    E+A +T I+YGGS   +N KEL A PDVDG L+GGA+LK
Sbjct:  151 VFDLSAEDFSK---IVLAYEPVWAIGTGKTASPAQAQEIHAFIRSAVAEKYGKEIADNTSILYGGSCKPSNAKELFANPDVDGGLIGGAALK 239          
BLAST of FC871445 vs. ExPASy Swiss-Prot
Match: TPIS_BACFN (Triosephosphate isomerase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.328e-22
Identity = 53/92 (57.61%), Postives = 66/92 (71.74%), Query Frame = 1
Query:   13 VFFTNLYDQSKCHPVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVASSTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 288
            VF  +  D SK   +VLAYEPVWAIGTGK A+PAQAQE+HA +R  + +    E+A +T I+YGGS   +N KEL A PDVDG L+GGA+LK
Sbjct:  151 VFDLSAEDFSK---IVLAYEPVWAIGTGKTASPAQAQEIHAFIRSAVAEKYGKEIADNTSILYGGSCKPSNAKELFANPDVDGGLIGGAALK 239          
BLAST of FC871445 vs. ExPASy Swiss-Prot
Match: TPIS_AZOPC (Triosephosphate isomerase OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.328e-22
Identity = 50/88 (56.82%), Postives = 64/88 (72.73%), Query Frame = 1
Query:   55 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVASSTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKS 315
            ++LAYEPVWAIGTG+ ATP Q QE+H  +R+ L DN    +A+ T I+YGGS N  N KEL   PDVDG L+GGASLK + F+ II++
Sbjct:  163 IILAYEPVWAIGTGRTATPVQVQEMHIFIRQILIDNYGQAIANETSILYGGSCNAGNAKELFINPDVDGGLIGGASLKVDTFLSIIEA 250          
BLAST of FC871445 vs. ExPASy Swiss-Prot
Match: TPIS_PSYIN (Triosephosphate isomerase OS=Psychromonas ingrahamii (strain 37) GN=tpiA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.250e-21
Identity = 53/88 (60.23%), Postives = 67/88 (76.14%), Query Frame = 1
Query:   58 VLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVASSTRIIYGGSVNGANCKELAAQPDVDGFLVGGAS-LKPEFIDIIKSA 318
            V+AYEPVWAIGTGKVA+  QAQ+VHA +R WL +  S  VA+  +I+YGGSV  ++ KEL AQPD+DG LVGGA+ L  EF+ II+ A
Sbjct:  163 VIAYEPVWAIGTGKVASSEQAQDVHAHIRTWLAEQ-SKVVAAKVQILYGGSVKASSAKELFAQPDIDGGLVGGAALLVEEFVGIIEGA 249          
BLAST of FC871445 vs. ExPASy Swiss-Prot
Match: TPIS_PASMU (Triosephosphate isomerase OS=Pasteurella multocida GN=tpiA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.250e-21
Identity = 59/95 (62.11%), Postives = 66/95 (69.47%), Query Frame = 1
Query:   58 VLAYEPVWAIGTGKVATPAQAQEVHAELRKWL--KDNVSAEVASSTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKKN 333
            V+AYEP+WAIGTGK ATPAQAQ VHA +R  +  KDN    VA    I YGGSVN AN  EL  QPD+DG LVGGASLK P F  I+K+A   KN
Sbjct:  170 VIAYEPIWAIGTGKSATPAQAQAVHAFIRGHIAKKDNA---VAEQVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKAPAFAVIVKAAAKAKN 261          
BLAST of FC871445 vs. ExPASy Swiss-Prot
Match: TPIS_BACV8 (Triosephosphate isomerase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=tpiA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.250e-21
Identity = 53/92 (57.61%), Postives = 64/92 (69.57%), Query Frame = 1
Query:   13 VFFTNLYDQSKCHPVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVASSTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 288
            VF  +  D SK   ++LAYEPVWAIGTGK AT  QAQE+HA +R  + D    EVA +T I+YGGS   +N KEL A PDVDG L+GGA+LK
Sbjct:  151 VFSLSAEDFSK---IILAYEPVWAIGTGKTATAEQAQEIHAFIRSLIADKYGKEVADNTSILYGGSCKPSNAKELFANPDVDGGLIGGAALK 239          
BLAST of FC871445 vs. ExPASy Swiss-Prot
Match: TPIS_HAEIN (Triosephosphate isomerase OS=Haemophilus influenzae GN=tpiA PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.633e-21
Identity = 57/93 (61.29%), Postives = 64/93 (68.82%), Query Frame = 1
Query:   58 VLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVASSTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKKN 333
            V+AYEP+WAIGTGK ATPAQAQ VHA +R  +     A VA    I YGGSVN AN  EL  QPD+DG LVGGASLK P F  I+K+A   KN
Sbjct:  172 VIAYEPIWAIGTGKSATPAQAQAVHAFIRGHIAAKSQA-VAEQVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKAPAFAVIVKAAAAAKN 263          
The following BLAST results are available for this feature:
BLAST of FC871445 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_KLUMA1.928e-2258.62Triosephosphate isomerase OS=Kluyveromyces marxian... [more]
TPIS_ANOME3.290e-2272.73Triosephosphate isomerase (Fragment) OS=Anopheles ... [more]
TPIS_COLP37.328e-2257.29Triosephosphate isomerase OS=Colwellia psychreryth... [more]
TPIS_BACFR7.328e-2257.61Triosephosphate isomerase OS=Bacteroides fragilis ... [more]
TPIS_BACFN7.328e-2257.61Triosephosphate isomerase OS=Bacteroides fragilis ... [more]
TPIS_AZOPC7.328e-2256.82Triosephosphate isomerase OS=Azobacteroides pseudo... [more]
TPIS_PSYIN1.250e-2160.23Triosephosphate isomerase OS=Psychromonas ingraham... [more]
TPIS_PASMU1.250e-2162.11Triosephosphate isomerase OS=Pasteurella multocida... [more]
TPIS_BACV81.250e-2157.61Triosephosphate isomerase OS=Bacteroides vulgatus ... [more]
TPIS_HAEIN1.633e-2161.29Triosephosphate isomerase OS=Haemophilus influenza... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1AC12FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1AC12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871445 ID=FC871445; Name=FC871445; organism=Citrus sinensis; type=EST; length=579bp
CATTCTTGGATAGTGTTCTTTACTAATTTATATGATCAATCCAAGTGTCA
TCCTGTTGTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGG
TTGCAACCCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGG
CTTAAAGACAATGTCAGTGCTGAAGTTGCATCATCAACTAGAATCATCTA
CGGAGGTTCTGTAAATGGAGCAAATTGCAAAGAATTGGCAGCACAACCTG
ATGTGGATGGATTTTTGGTTGGTGGAGCTTCTCTAAAGCCGGAGTTCATC
GATATTATCAAGTCTGCCACAGTGAAGAAGAATTGAAGTTAAAGACCAAG
CTACTCGGCTTGCTGATGCCTGCAGTTTTCTCTGTTATGCGTTCTGGAAA
CTAGCGTTGTAATTTTTGTGGTCTGTTAAGTGTTACCAACGCCTTTCCAG
TATAATAAGTTAAATCTTCAGAATTCTTAAGAATCTCTTTCCTATTTCAG
TGGGGATTTGAAACTTATCATTGTGGATTTAATAAATGGTTGCTTTTCCC
TTCTTGCAAAATAAAAAAAAAAAAAAAAA
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