FC871435

Overview
NameFC871435
Unique NameFC871435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871435 vs. ExPASy Swiss-Prot
Match: PSB9_MUSMB (Proteasome subunit beta type-9 OS=Mus musculus bactrianus GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.302e-13
Identity = 48/169 (28.40%), Postives = 82/169 (48.52%), Query Frame = 2
Query:    5 GVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVIT 511
            GV++G+D+R + G  V ++  +K+  +   I+C  +G+AAD +A+ DM + QL+LH         V+ A  ++K   + Y+  + A L++ G D            G     PF   GSGS       ++ YK G+T +E  +   +AI   +  D  SG  + +  IT
Sbjct:   31 GVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGTMGGMLIRQPFTISGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYLVTIT 199          
BLAST of FC871435 vs. ExPASy Swiss-Prot
Match: PSB9_MUSPL (Proteasome subunit beta type-9 OS=Mus platythrix GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.313e-13
Identity = 48/169 (28.40%), Postives = 82/169 (48.52%), Query Frame = 2
Query:    5 GVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVIT 511
            GV++G+D+R + G  V ++  +K+  +   I+C  +G+AAD +A+ DM + QL+LH         V+ A  ++K   + Y+  + A L++ G D            G     PF   GSGS       ++ YK G+T +E  +   +AI   +  D  SG  + +  IT
Sbjct:   31 GVVVGSDSRVSAGEAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGTMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTSEECRRFTTNAITLAMNRDGSSGGVIYLVTIT 199          
BLAST of FC871435 vs. ExPASy Swiss-Prot
Match: PSB9_MUSSI (Proteasome subunit beta type-9 OS=Mus spicilegus GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.633e-13
Identity = 48/169 (28.40%), Postives = 82/169 (48.52%), Query Frame = 2
Query:    5 GVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVIT 511
            GV++G+D+R + G  V ++  +K+  +   I+C  +G+AAD +A+ DM + QL+LH         V+ A  ++K   + Y+  + A L++ G D            G     PF   GSGS       ++ YK G+T +E  +   +AI   +  D  SG  + +  IT
Sbjct:   31 GVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGTMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYLVTIT 199          
BLAST of FC871435 vs. ExPASy Swiss-Prot
Match: PSB9_MUSDU (Proteasome subunit beta type-9 OS=Mus dunni GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.633e-13
Identity = 48/169 (28.40%), Postives = 82/169 (48.52%), Query Frame = 2
Query:    5 GVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVIT 511
            GV++G+D+R + G  V ++  +K+  +   I+C  +G+AAD +A+ DM + QL+LH         V+ A  ++K   + Y+  + A L++ G D            G     PF   GSGS       ++ YK G+T +E  +   +AI   +  D  SG  + +  IT
Sbjct:   31 GVVVGSDSRVSAGAAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGTMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYLVTIT 199          
BLAST of FC871435 vs. ExPASy Swiss-Prot
Match: PSB9_MOUSE (Proteasome subunit beta type-9 OS=Mus musculus GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.633e-13
Identity = 48/169 (28.40%), Postives = 82/169 (48.52%), Query Frame = 2
Query:    5 GVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVIT 511
            GV++G+D+R + G  V ++  +K+  +   I+C  +G+AAD +A+ DM + QL+LH         V+ A  ++K   + Y+  + A L++ G D            G     PF   GSGS       ++ YK G+T +E  +   +AI   +  D  SG  + +  IT
Sbjct:   31 GVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGTMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYLVTIT 199          
BLAST of FC871435 vs. ExPASy Swiss-Prot
Match: PSMA_PYRAB (Proteasome subunit alpha OS=Pyrococcus abyssi GN=psmA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.651e-12
Identity = 54/181 (29.83%), Postives = 90/181 (49.72%), Query Frame = 2
Query:    2 DGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESR---VVTALTLLKKHLFNYQGY--VQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEY 529
            DGV+L  + R T   ++  ++ EKI  +  +I    +G  AD   + +    + Q+HR   G  +    +V  +  LK+    Y G     AAL++ GV+   P L+   P G+        +GSG   AMA+FE KY++ +T DE I+L + A+   +  +  S  N++V VIT   K++
Sbjct:   46 DGVVLAVEKRITSR-LIEPESYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIHRLTYGEPAPLAVIVKKICDLKQMHTQYGGVRPFGAALLMAGVN-DKPELYETDPSGAYFAWKAVAIGSGRNTAMAIFEDKYRDDMTLDEAIKLAIFALAKTM--EKPSAENIEVAVITVKDKKF 222          
BLAST of FC871435 vs. ExPASy Swiss-Prot
Match: PSMA_METJA (Proteasome subunit alpha OS=Methanocaldococcus jannaschii GN=psmA PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.651e-12
Identity = 51/178 (28.65%), Postives = 82/178 (46.07%), Query Frame = 2
Query:    2 DGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQ--------AALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVIT 511
            DGV+L  D R T   +V  ++ EKI  +  ++    +G  AD   + D    + Q++R   G E   ++   L KK     Q Y Q         +L++ G+D     L    P G+        +GSG    M + E +Y++ +T DEG++L + A+     N+     NVDVC+IT
Sbjct:   45 DGVVLAVDRRITS-KLVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEE---ISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDITLDEGLELAITALTKA--NEDIKPENVDVCIIT 216          
BLAST of FC871435 vs. ExPASy Swiss-Prot
Match: PSB6_ENCCU (Probable proteasome subunit beta type-6 OS=Encephalitozoon cuniculi GN=PRE3 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.388e-11
Identity = 45/171 (26.32%), Postives = 84/171 (49.12%), Query Frame = 2
Query:    2 DGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITK 514
            DGV++GAD+R + G  V  +  +K+  +   I+ C +G++ADT+ ++  +   L ++        +V  A  L  K ++     + A L++ G D   P +  I   GS     +A  GSGS       +  ++ G++ +EGI+ V +A+   I  D  SG  + +  I++
Sbjct:   20 DGVLIGADSRTSMGAYVSSRVTDKLTQITDKIFVCRSGSSADTQMISSYLRMYLSMYSQLEDSIPQVQRAAALASKIIYENPSLL-AGLIVAGYD-DKPRVFNISLGGSLTERDWAIGGSGSAFIYGYCDVNWRSGMSLEEGIRFVRNAVSCAINRDNASGGCIRMSAISR 188          
BLAST of FC871435 vs. ExPASy Swiss-Prot
Match: PSMA_PYRHO (Proteasome subunit alpha OS=Pyrococcus horikoshii GN=psmA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.273e-11
Identity = 51/181 (28.18%), Postives = 90/181 (49.72%), Query Frame = 2
Query:    2 DGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESR---VVTALTLLKKHLFNYQGY--VQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEY 529
            +GV+L  + R T   ++  ++ EKI  +  +I    +G  AD   + +    + Q+HR   G  +    +V  +  LK+    Y G     AAL++ GV+   P L+   P G+        +GSG   AMA+FE KYK+ ++ +E I+L + A+   +  +  S  N++V +IT   K++
Sbjct:   46 EGVVLAVEKRITSR-LIEPESYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIHRLTYGEPAPLAVIVKKICDLKQMHTQYGGVRPFGAALLMAGVN-EKPELYETDPSGAYFAWKAVAIGSGRNTAMAIFEEKYKDDMSLEEAIKLAIFALAKTM--EKPSAENIEVAIITVKDKKF 222          
BLAST of FC871435 vs. ExPASy Swiss-Prot
Match: PSMA_METKA (Proteasome subunit alpha OS=Methanopyrus kandleri GN=psmA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.273e-11
Identity = 50/177 (28.25%), Postives = 86/177 (48.59%), Query Frame = 2
Query:    2 DGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRV---VTALTLLKKHLFNYQGYVQ---AALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITK 514
            +GV+LG D R T   ++  ++ EK++ +  +I    AG  AD   + +    + Q +RY  G    V   V A+  LK+ ++   G V+    AL++ GVD  G  L    P G+        +G G   A+ +FE +Y+E +T  E I+L V A+      +  +  N+++ V+ K
Sbjct:   46 EGVVLGVDKRVTS-KLIEPESIEKVYQIDTHIGAATAGLVADARVLVERARIEAQTYRYTYGEPIDVDVLVKAICDLKQ-VYTQHGGVRPFGTALLIAGVDTKGCRLFETDPSGALTEHKATAIGEGRQEALDVFEEEYREDMTLQEAIELAVRALYEASREET-TADNLEIAVVDK 219          
The following BLAST results are available for this feature:
BLAST of FC871435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
PSB9_MUSMB3.302e-1328.40Proteasome subunit beta type-9 OS=Mus musculus bac... [more]
PSB9_MUSPL4.313e-1328.40Proteasome subunit beta type-9 OS=Mus platythrix G... [more]
PSB9_MUSSI5.633e-1328.40Proteasome subunit beta type-9 OS=Mus spicilegus G... [more]
PSB9_MUSDU5.633e-1328.40Proteasome subunit beta type-9 OS=Mus dunni GN=Psm... [more]
PSB9_MOUSE5.633e-1328.40Proteasome subunit beta type-9 OS=Mus musculus GN=... [more]
PSMA_PYRAB3.651e-1229.83Proteasome subunit alpha OS=Pyrococcus abyssi GN=p... [more]
PSMA_METJA3.651e-1228.65Proteasome subunit alpha OS=Methanocaldococcus jan... [more]
PSB6_ENCCU1.388e-1126.32Probable proteasome subunit beta type-6 OS=Encepha... [more]
PSMA_PYRHO5.273e-1128.18Proteasome subunit alpha OS=Pyrococcus horikoshii ... [more]
PSMA_METKA5.273e-1128.25Proteasome subunit alpha OS=Methanopyrus kandleri ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1AB10FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1AB10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871435 ID=FC871435; Name=FC871435; organism=Citrus sinensis; type=EST; length=858bp
GGATGGCGTCATTCTTGGGGCAGATACCAGAGCAACTGAAGGACCCATAG
TTTGCGATAAGAATTGTGAGAAAATTCATTACATGGCTCCAAACATATAT
TGTTGTGGTGCAGGAACTGCTGCTGACACAGAGGCTGTAACTGACATGGT
CAGCTCACAGCTGCAGTTACATCGTTATCATACTGGTAGAGAGTCAAGGG
TTGTTACAGCACTGACTCTTCTCAAGAAGCACCTTTTCAACTACCAAGGT
TATGTGCAAGCTGCTTTGGTTCTTGGTGGAGTTGATTGCACTGGACCTCA
TCTTCACACAATATATCCACATGGTTCAACTGACACTTTACCATTTGCGA
CAATGGGTTCTGGTTCTCTTGCTGCCATGGCTATGTTTGAATCAAAATAC
AAAGAAGGCCTGACTAAAGATGAGGGAATACAGCTAGTTGTGGACGCCAT
TTGCTCTGGTATATTCAATGACTTGGGAAGTGGAAGCAATGTTGATGTCT
GTGTAATTACCAAGGGGCACAAAGAGTACCTGAGGAACCACCTTTTGCCA
AATCCTCGCACCTTTGTCAATGCCAAAGGCTATTCTTTCCCTAAGAAGAC
AGAGGTCCTCTTGACGAAGATCACCCCGCTGAGGGAAAGGGTGGAAGTGG
TTGAGGGAGGAGATGCAATGGAAGAGTGAAAGATCAGAAGAGCACAAGGC
TGAAATCAGAGTATAGTTTACAATTCCTGGTTTAGAAACTGGAATGATAT
TTTTTAAAATTTTACATTTTCCGGAATTGGGTTCGCACATGACTACTTGT
GGATTATGTTATTTAGCTTTGTGTTCAGTTGATGGTTGTGTTGATGGAAT
TCCTTTGC
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