EY679883

Overview
NameEY679883
Unique NameEY679883
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length873
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679883 vs. ExPASy Swiss-Prot
Match: GLYM_RABIT (Serine hydroxymethyltransferase, mitochondrial OS=Oryctolagus cuniculus GN=SHMT2 PE=1 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 3.040e-54
Identity = 110/210 (52.38%), Postives = 145/210 (69.05%), Query Frame = 2
Query:    2 KGVKEIN-KQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVA-TTQSANFQSKIAKLRHDVEEYAKQFPTIGF 625
            KGV+ ++ K G+E+ Y +E++IN AVFP LQGGPHNH I  +AVALKQA TP ++ Y  QVL N    A  LLE GY LVSGGT+NHLVLV+L+ K +DG+R E+VLE V I ANKNT PGD SA+ PGG+R+G PALTSR F E+DF +V  F D  V + +++K +T   KL+DF +   +       +A LR  V+++A+ FP  GF
Sbjct:  294 KGVRTVDPKTGQEIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKRKT--AKLQDFKSFLLKDPETSQHLADLRRRVQQFARAFPMPGF 501          
BLAST of EY679883 vs. ExPASy Swiss-Prot
Match: GLYC_NEUCR (Serine hydroxymethyltransferase, cytosolic OS=Neurospora crassa GN=for PE=3 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 3.970e-54
Identity = 107/207 (51.69%), Postives = 150/207 (72.46%), Query Frame = 2
Query:    2 KGVKEIN-KQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSE--TQGTKLKDFVATTQSANFQSKIAKLRHDVEEYAKQFP 613
            +GV+ ++ K GKE  YD E+KIN +VFPG QGGPHNHTIT LAVALKQA +PE+K YQ++V++N     + L E+GY+LVS GT++H+VLV+L+   +DG+RVE +LE ++I  NKN VPGD SA+ PGG+R+GTPA+TSRGF E DF KVA F D AVKL  +I++    +  K KDF A   +++   +I +L+ ++  ++  FP
Sbjct:  263 RGVRSVDAKTGKETLYDLEDKINFSVFPGHQGGPHNHTITALAVALKQAASPEFKEYQQKVVANAKALEKKLKELGYKLVSDGTDSHMVLVDLRPIGVDGARVEFLLEQINITCNKNAVPGDKSALTPGGLRIGTPAMTSRGFGEADFEKVAVFVDEAVKLCKEIQASLPKEANKQKDFKAKIATSDI-PRINELKQEIAAWSNTFP 468          
BLAST of EY679883 vs. ExPASy Swiss-Prot
Match: GLYC_CANAL (Serine hydroxymethyltransferase, cytosolic OS=Candida albicans GN=SHM2 PE=1 SV=3)

HSP 1 Score: 210.305 bits (534), Expect = 1.155e-53
Identity = 105/207 (50.72%), Postives = 143/207 (69.08%), Query Frame = 2
Query:    2 KGVKEIN-KQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSE--TQGTKLKDFVATTQSANFQSKIAKLRHDVEEYAKQFP 613
            +GV+ +N K G+E+ YD E  IN +VFPG QGGPHNHTI  LA ALKQA TPE+K YQEQVL N         + GY+LVS GT++H+VLV+LK+K+IDG+RVE V E ++IA NKN++PGD SA+VPGG+R+G PA+T+RG  EEDF K+  + D AV  A +++S+      KLKDF       +   K+  +R ++ ++A  FP
Sbjct:  263 RGVRSVNPKTGQEILYDLENPINFSVFPGHQGGPHNHTIAALATALKQANTPEFKEYQEQVLKNAKALESEFTKKGYKLVSDGTDSHMVLVSLKDKQIDGARVETVCEKINIALNKNSIPGDKSALVPGGVRIGAPAMTTRGLGEEDFKKIVSYIDFAVNYAKEVQSQLPKDANKLKDFKNAVSGDS--EKLKAVRDEIYQWAGSFP 467          
BLAST of EY679883 vs. ExPASy Swiss-Prot
Match: GLYC_SCHPO (Probable serine hydroxymethyltransferase, cytosolic OS=Schizosaccharomyces pombe GN=shm2 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.509e-53
Identity = 107/206 (51.94%), Postives = 143/206 (69.42%), Query Frame = 2
Query:    2 KGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKS---ETQGTKLKDFVATTQSANFQSKIAKLRHDVEEYAKQF 610
            KG +  +K+G  + Y+ E+KIN +VFPG QGGPHNHTIT LAVAL QA TPE+  YQ+ VLSN    A   +  GY+LVSGGT+ HLVLV+L +K +DG+RVE++LE V+I+ANKNTVPGD SA++P G+R+GTPA T+RGF E+DF +V    D  V L  KI     +   +K +DF A     +  S+IAKL+ +V  +A +F
Sbjct:  263 KGTRSHDKRGNPILYELEDKINFSVFPGHQGGPHNHTITALAVALGQAKTPEFYQYQKDVLSNAKAMANAFITRGYKLVSGGTDTHLVLVDLTDKGVDGARVERILELVNISANKNTVPGDKSALIPRGLRLGTPACTTRGFDEKDFERVVELIDEVVSLTKKINEAALKEGKSKFRDFKAYVGDGSKFSEIAKLKKEVITWAGKF 468          
BLAST of EY679883 vs. ExPASy Swiss-Prot
Match: GLYM_ASHGO (Serine hydroxymethyltransferase, mitochondrial OS=Ashbya gossypii GN=SHM1 PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.573e-53
Identity = 104/213 (48.83%), Postives = 152/213 (71.36%), Query Frame = 2
Query:    2 KGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQS------KIAKLRHDVEEYAKQFPTIG 622
            KG++++ K+G E+ YD +++IN +VFP  QGGPHNHTI+ LAVALKQA TPE+K YQ  V+ N   F + L + G+ LVSGGT+ HL+L++L    IDGSR+E +LE ++IAANKNT+PGD SA+ P G+R+GTPA+T+RGF   +F +VA + + AVKLA+ +KS+ +    KD  A T+ A+F+S      ++ KL ++V ++  Q+P  G
Sbjct:  286 KGIRKVTKKGTEIMYDLDKRINFSVFPAHQGGPHNHTISALAVALKQAATPEFKNYQTAVVENAKVFGEELSKRGFSLVSGGTDTHLLLIDLSPMGIDGSRLETILERLNIAANKNTIPGDKSALYPSGLRVGTPAMTTRGFGPAEFGRVAAYINEAVKLAIGLKSQ-EPVDAKD--AKTRLAHFKSFCAESEQVTKLANEVADWVAQYPVPG 495          
BLAST of EY679883 vs. ExPASy Swiss-Prot
Match: GLYC_CANGA (Serine hydroxymethyltransferase, cytosolic OS=Candida glabrata GN=SHM2 PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 6.339e-52
Identity = 101/207 (48.79%), Postives = 140/207 (67.63%), Query Frame = 2
Query:    2 KGVKEIN-KQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSE--TQGTKLKDFVATTQSANFQSKIAKLRHDVEEYAKQFP 613
            +G++ +N K GKE+ YD E  IN +VFPG QGGPHNHTI  LA ALKQA TPE+K YQ QVL N          +GY LVS GT++H+VLV+L+ K +DG+RVE V E ++IA NKN++PGD SA+VPGG+R+G PA+T+RG  EEDF ++  + D AVK A + +S    +  KLKDF A         ++A L+ ++ ++  ++P
Sbjct:  262 RGIRSVNQKTGKEIPYDLENPINFSVFPGHQGGPHNHTIAALATALKQAATPEFKEYQTQVLKNAKALENEFQTLGYRLVSNGTDSHMVLVSLREKGVDGARVEYVCEKINIALNKNSIPGDKSALVPGGVRIGAPAMTTRGMGEEDFHRIVRYIDQAVKFAEQTQSSLPKEANKLKDFKAKVD--EIADQLAPLKKEIYDWTAEYP 466          
BLAST of EY679883 vs. ExPASy Swiss-Prot
Match: GLYD_SCHPO (Probable serine hydroxymethyltransferase, cytosolic OS=Schizosaccharomyces pombe GN=SPAC24C9.12c PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.081e-51
Identity = 98/206 (47.57%), Postives = 139/206 (67.48%), Query Frame = 2
Query:    2 KGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSE--TQGTKLKDFVATTQSANFQSKIAKLRHDVEEYAKQFP 613
            +G+++ +K+G  ++YD E+KIN +VFPG QGGPHNHTIT LAVALKQ   P YK YQ QV+ N     +   + GY+L + GT++H+VLV++K+K +DG+R E+VLE ++I  NKNTVP D SA  P GIR+GTPA+T+RGF E+DF +V  + D A+  A  ++ E      KLKDF A         ++ +L+ +V E+A  FP
Sbjct:  257 RGLRKHDKKGNPIYYDLEDKINFSVFPGHQGGPHNHTITALAVALKQCQEPAYKEYQAQVVKNAKVCEEEFKKRGYKLAADGTDSHMVLVDVKSKGVDGARAERVLELINIVTNKNTVPSDKSAFSPSGIRVGTPAMTTRGFKEQDFVRVVDYIDRALTFAANLQKELPKDANKLKDFKAKLGEGEQYPELVQLQKEVAEWASSFP 462          
BLAST of EY679883 vs. ExPASy Swiss-Prot
Match: GLYC_ASHGO (Serine hydroxymethyltransferase, cytosolic OS=Ashbya gossypii GN=SHM2 PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 9.153e-51
Identity = 99/207 (47.83%), Postives = 144/207 (69.57%), Query Frame = 2
Query:    2 KGVKEIN-KQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSE--TQGTKLKDFVATTQSANFQSKIAKLRHDVEEYAKQFP 613
            +GV+ ++ K G+EV YD E  IN +VFPG QGGPHNHTI+ LA ALKQATTPE++ YQE VL N         ++ Y LVS GT++H+VLV+L+ K +DG+RVE V E ++IA NKN++PGD SA+VPGG+R+G PA+T+RG  EEDFA++  + + AV++A  I+     +  +LKDF A  +      +IA+L  ++  + +++P
Sbjct:  262 RGVRSVHPKTGEEVMYDLEGPINFSVFPGHQGGPHNHTISALATALKQATTPEFREYQELVLKNAKVLETEFKKLNYRLVSDGTDSHMVLVSLREKGVDGARVEHVCEKINIALNKNSIPGDKSALVPGGVRIGAPAMTTRGMGEEDFARIVGYINRAVEIARSIQQSLPKEANRLKDFKAKVEGGT--DEIAQLAQEIYSWTEEYP 466          
BLAST of EY679883 vs. ExPASy Swiss-Prot
Match: GLYC_YEAST (Serine hydroxymethyltransferase, cytosolic OS=Saccharomyces cerevisiae GN=SHM2 PE=1 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 5.933e-50
Identity = 98/207 (47.34%), Postives = 138/207 (66.67%), Query Frame = 2
Query:    2 KGVKEIN-KQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSE--TQGTKLKDFVATTQSANFQSKIAKLRHDVEEYAKQFP 613
            +GV+ IN K GKEV YD E  IN +VFPG QGGPHNHTI  LA ALKQA TPE+K YQ QVL N          +GY LVS GT++H+VLV+L+ K +DG+RVE + E ++IA NKN++PGD SA+VPGG+R+G PA+T+RG  EEDF ++  + + AV+ A +++        +LKDF A     +    +   + ++ ++A ++P
Sbjct:  262 RGVRSINPKTGKEVLYDLENPINFSVFPGHQGGPHNHTIAALATALKQAATPEFKEYQTQVLKNAKALESEFKNLGYRLVSNGTDSHMVLVSLREKGVDGARVEYICEKINIALNKNSIPGDKSALVPGGVRIGAPAMTTRGMGEEDFHRIVQYINKAVEFAQQVQQSLPKDACRLKDFKAKVDEGS--DVLNTWKKEIYDWAGEYP 466          
BLAST of EY679883 vs. ExPASy Swiss-Prot
Match: GLYC1_DICDI (Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum GN=shmt1 PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.414e-43
Identity = 93/205 (45.37%), Postives = 130/205 (63.41%), Query Frame = 2
Query:   11 KEINKQGKEVF-YDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSKIAKLRHDVEEYAKQFPTIG 622
            K ++  GKE+  YD E KIN AVFP LQGGPH + I G+AVALK+A + E+K Y  QV  N +     L+  GY+LV+ GT+NHL+L +L+ K + G++ EK  +  +I  NKN V GD +A+ PGGIR+G+ ALTSRG  E DF K+A F D  V ++++I+    G KL DFV      N   ++  LR +VEE++ +F   G
Sbjct:  256 KRVDGNGKEIEEYDIESKINFAVFPSLQGGPHENVIAGVAVALKEADSQEFKEYALQVKKNAAAIGNALMNKGYKLVTNGTDNHLILWDLRPKELTGNKFEKAADIANITVNKNAVHGDTNAISPGGIRIGSSALTSRGLKEADFEKIADFLDRIVSISLEIQGRV-GKKLVDFVV---EINKSKELLDLRKEVEEFSSKFTLPG 456          
The following BLAST results are available for this feature:
BLAST of EY679883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYM_RABIT3.040e-5452.38Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_NEUCR3.970e-5451.69Serine hydroxymethyltransferase, cytosolic OS=Neur... [more]
GLYC_CANAL1.155e-5350.72Serine hydroxymethyltransferase, cytosolic OS=Cand... [more]
GLYC_SCHPO1.509e-5351.94Probable serine hydroxymethyltransferase, cytosoli... [more]
GLYM_ASHGO2.573e-5348.83Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_CANGA6.339e-5248.79Serine hydroxymethyltransferase, cytosolic OS=Cand... [more]
GLYD_SCHPO1.081e-5147.57Probable serine hydroxymethyltransferase, cytosoli... [more]
GLYC_ASHGO9.153e-5147.83Serine hydroxymethyltransferase, cytosolic OS=Ashb... [more]
GLYC_YEAST5.933e-5047.34Serine hydroxymethyltransferase, cytosolic OS=Sacc... [more]
GLYC1_DICDI2.414e-4345.37Serine hydroxymethyltransferase 1 OS=Dictyostelium... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-005-A11-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679883 ID=EY679883; Name=EY679883; organism=Citrus sinensis; type=EST; length=873bp
GAAGGGAGTGAAAGAGATTAACAAACAAGGGAAGGAGGTGTTTTATGATT
ATGAAGAAAAAATAAATCAAGCTGTCTTTCCTGGACTCCAAGGTGGCCCA
CACAACCACACAATTACTGGTTTAGCAGTTGCCTTGAAACAGGCCACTAC
TCCAGAGTATAAAGCCTATCAAGAGCAAGTTCTGAGCAATTGCTCGAAAT
TTGCACAGACTCTGCTCGAGATGGGCTATGAACTTGTTTCTGGTGGAACT
GAGAACCATCTAGTGTTGGTGAATTTGAAAAACAAGAGAATTGATGGTTC
CAGAGTTGAAAAAGTGTTGGAAGCTGTTCATATTGCAGCCAACAAAAACA
CTGTTCCTGGGGATGTGTCAGCCATGGTTCCAGGTGGCATCAGGATGGGA
ACTCCGGCTCTTACTTCTAGGGGATTTGTTGAGGAGGATTTTGCCAAGGT
AGCATATTTCTTTGATGCTGCTGTGAAGTTGGCTGTGAAGATCAAGTCTG
AAACTCAAGGAACAAAGTTGAAAGATTTCGTGGCCACAACACAGTCCGCT
AACTTCCAATCCAAGATTGCGAAACTTCGCCATGATGTTGAGGAGTATGC
AAAGCAGTTCCCCACAATTGGGTTTGAAAAGGAAACCATGAAGTACAAAA
ACTGAAAAAAAAACCCCACTGTACTAAAGCACCAAAAACCCGCCCGGATG
ACCTTTTTTTAACCCAAGCCGACAAAGGGATAAATGGTACTTTAGGATTA
TGAACCTTGGAATAACTTTCCAACCCTGGGATTTGGGCCCTTTTTTGAAA
ACCCATAACCACCAAACCTTGGTTTTTAAATCCAATTAATGGTTAAAAAG
AGAACCCTGGGTTTTTACGGGAG
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