EY679883

Overview
NameEY679883
Unique NameEY679883
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length873
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679883 vs. ExPASy Swiss-Prot
Match: GLYA_CLOD6 (Serine hydroxymethyltransferase OS=Clostridium difficile (strain 630) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.124e-32
Identity = 70/153 (45.75%), Postives = 100/153 (65.36%), Query Frame = 2
Query:   50 YEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVS-AMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSET 505
            Y + I++A+FPG+QGGP  H I   AV  K+A + E+K YQ QV  N    A+ L++  ++L+SGGT+NHL+L++L NK I G   EK L+  +I ANKNT+P D + A+V  GIR+GTPA+T+RG  EED A +A   D  +    + K+ T
Sbjct:  243 YAKDIDKAIFPGIQGGPLEHIIASKAVCFKEALSDEFKEYQVQVAKNAKALAEELIKRDFKLISGGTDNHLILLDLTNKNITGKAAEKRLDDAYITANKNTIPFDPNGALVTSGIRLGTPAVTTRGMKEEDMAIIAEAIDLCLTYDEESKART 395          
BLAST of EY679883 vs. ExPASy Swiss-Prot
Match: GLYA_CLOB8 (Serine hydroxymethyltransferase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.124e-32
Identity = 66/144 (45.83%), Postives = 96/144 (66.67%), Query Frame = 2
Query:   50 YEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 478
            Y + +N+ +FPG+QGGP  H I   AV  K+A  P +K Y E V+ NC + A+ L+  G+++VSGGT+NH+ LV+L NK I G   E +L++V I  NKNTVP +  S  V  GIR+GT A+T+RGFV++D A++A     A++
Sbjct:  244 YAQILNKNIFPGIQGGPLEHIIAAKAVCFKEALDPSFKTYGENVVENCKELAEQLIARGFKIVSGGTDNHVFLVDLNNKDITGKEAEALLDSVGITVNKNTVPNETRSPFVTSGIRIGTAAITTRGFVKDDMAEIAAVISEAIE 387          
BLAST of EY679883 vs. ExPASy Swiss-Prot
Match: GLYA_DIAST (Serine hydroxymethyltransferase OS=Diaphorobacter sp. (strain TPSY) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.468e-32
Identity = 68/132 (51.52%), Postives = 90/132 (68.18%), Query Frame = 2
Query:   47 DYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEED 439
            ++E+ IN A+FPGLQGGP  H I   AVA K+A +PE+K YQ+QV  N   FA+TL++ G  +VSG TE+H++LV+L+ K I G   E  L   HI  NKN +P D    MV  GIR+GTPA+T+RGF EE+
Sbjct:  244 EHEKAINSAIFPGLQGGPLEHVIAAKAVAFKEALSPEFKQYQQQVTKNAKVFAETLIQRGLRIVSGRTESHVMLVDLRAKGITGKEAEAALGKAHITINKNAIPNDPEKPMVTSGIRVGTPAITTRGFKEEE 375          
BLAST of EY679883 vs. ExPASy Swiss-Prot
Match: GLYA_CLOK5 (Serine hydroxymethyltransferase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.468e-32
Identity = 68/144 (47.22%), Postives = 97/144 (67.36%), Query Frame = 2
Query:   50 YEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 478
            Y   +++ +FPG+QGGP  H I   AV   +A   EYK Y +Q++ N   F + L++ G+ LVSGGT+NHL+LV+L NK I G  +E++L+ V+I  NKN +P D +   V  GIR+GTPA+T+RGF EE+  KVAYF + AV+
Sbjct:  244 YGAALDKTIFPGIQGGPLMHIIAAKAVCFGEALKDEYKEYIDQIIKNAKVFGEELVKYGFRLVSGGTDNHLLLVDLTNKNITGKDLEELLDKVNITVNKNAIPFDKLKPNVTSGIRVGTPAVTTRGFKEEEMKKVAYFINKAVE 387          
BLAST of EY679883 vs. ExPASy Swiss-Prot
Match: GLYA_CLOK1 (Serine hydroxymethyltransferase OS=Clostridium kluyveri (strain NBRC 12016) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.468e-32
Identity = 68/144 (47.22%), Postives = 97/144 (67.36%), Query Frame = 2
Query:   50 YEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 478
            Y   +++ +FPG+QGGP  H I   AV   +A   EYK Y +Q++ N   F + L++ G+ LVSGGT+NHL+LV+L NK I G  +E++L+ V+I  NKN +P D +   V  GIR+GTPA+T+RGF EE+  KVAYF + AV+
Sbjct:  244 YGAALDKTIFPGIQGGPLMHIIAAKAVCFGEALKDEYKEYIDQIIKNAKVFGEELVKYGFRLVSGGTDNHLLLVDLTNKNITGKDLEELLDKVNITVNKNAIPFDKLKPNVTSGIRVGTPAVTTRGFKEEEMKKVAYFINKAVE 387          
BLAST of EY679883 vs. ExPASy Swiss-Prot
Match: GLYA_ACISJ (Serine hydroxymethyltransferase OS=Acidovorax sp. (strain JS42) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.468e-32
Identity = 68/132 (51.52%), Postives = 90/132 (68.18%), Query Frame = 2
Query:   47 DYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEED 439
            ++E+ IN A+FPGLQGGP  H I   AVA K+A +PE+K YQ+QV  N   FA+TL++ G  +VSG TE+H++LV+L+ K I G   E  L   HI  NKN +P D    MV  GIR+GTPA+T+RGF EE+
Sbjct:  244 EHEKAINSAIFPGLQGGPLEHVIAAKAVAFKEALSPEFKQYQQQVTKNAKVFAETLIQRGLRIVSGRTESHVMLVDLRAKGITGKEAEAALGKAHITINKNAIPNDPEKPMVTSGIRVGTPAITTRGFKEEE 375          
BLAST of EY679883 vs. ExPASy Swiss-Prot
Match: GLYA_STRM5 (Serine hydroxymethyltransferase OS=Stenotrophomonas maltophilia (strain R551-3) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.917e-32
Identity = 68/137 (49.64%), Postives = 91/137 (66.42%), Query Frame = 2
Query:   47 DYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 454
            D  +K+   VFPG+QGGP  H I G AVA K+A  P +KAYQ+QV+ N    A TL+  GY++VSGGT+NHL+LV++  K + G   E  L   HI  NKN+VP D  S  V  G+R+GTPA+T+RG+VE+D   +A
Sbjct:  247 DLVKKLQSIVFPGIQGGPLMHVIAGKAVAFKEALEPGFKAYQQQVVKNAQAMANTLIARGYKIVSGGTQNHLMLVDMIGKDVSGKDAEAALGKAHITVNKNSVPNDPRSPFVTSGLRLGTPAVTTRGYVEQDCVDLA 383          
BLAST of EY679883 vs. ExPASy Swiss-Prot
Match: GLYA_LAWIP (Serine hydroxymethyltransferase OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.917e-32
Identity = 79/190 (41.58%), Postives = 110/190 (57.89%), Query Frame = 2
Query:   47 DYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSKIAKLRHDVEEYAKQFP 613
            D  + IN  +FPG+QGGP  H I   AVAL +A+   +  YQ+QV+ N    A+ LL+ G+ LVSGGT+NHL+L++L NK+I G   EK L+   I  NKNTVP + +S  V  GIR+GTPALT+RG  E+D  KVA +   A+     I +ETQ                   + ++  +V  +A+QFP
Sbjct:  241 DMGKVINSQIFPGIQGGPLMHVIAAKAVALGEASKASFVTYQKQVILNAKTLAKQLLDAGFNLVSGGTDNHLLLIDLTNKKITGKDAEKALDQAGITVNKNTVPFETLSPFVTSGIRIGTPALTTRGLCEQDMIKVANWIVTALN---NINNETQ-------------------LKEINKEVTYFARQFP 408          
BLAST of EY679883 vs. ExPASy Swiss-Prot
Match: GLYA_COXBU (Serine hydroxymethyltransferase OS=Coxiella burnetii GN=glyA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.917e-32
Identity = 67/139 (48.20%), Postives = 94/139 (67.63%), Query Frame = 2
Query:   47 DYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 460
            + E+++N AVFPG QGGP  H I   AVA K+A  PE+K Y +Q+L N    A+ + E GY +VSGGT+NHL LV+L +K I G   E  L   +I  NKNTVPG+  S  V  G+R+GTPA+T+RGF E++ +++A++
Sbjct:  246 ELEKRLNSAVFPGSQGGPLMHIIAAKAVAFKEAMQPEFKTYAQQILKNAKAMAEVMKERGYTIVSGGTQNHLFLVSLLDKNISGKEAEAALGRANITVNKNTVPGETRSPFVTSGLRIGTPAITTRGFKEKEASQLAHW 384          
BLAST of EY679883 vs. ExPASy Swiss-Prot
Match: GLYA_COXBR (Serine hydroxymethyltransferase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.917e-32
Identity = 67/139 (48.20%), Postives = 94/139 (67.63%), Query Frame = 2
Query:   47 DYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 460
            + E+++N AVFPG QGGP  H I   AVA K+A  PE+K Y +Q+L N    A+ + E GY +VSGGT+NHL LV+L +K I G   E  L   +I  NKNTVPG+  S  V  G+R+GTPA+T+RGF E++ +++A++
Sbjct:  246 ELEKRLNSAVFPGSQGGPLMHIIAAKAVAFKEAMQPEFKTYAQQILKNAKAMAEVMKERGYTIVSGGTQNHLFLVSLLDKNISGKEAEAALGRANITVNKNTVPGETRSPFVTSGLRIGTPAITTRGFKEKEASQLAHW 384          
The following BLAST results are available for this feature:
BLAST of EY679883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_CLOD61.124e-3245.75Serine hydroxymethyltransferase OS=Clostridium dif... [more]
GLYA_CLOB81.124e-3245.83Serine hydroxymethyltransferase OS=Clostridium bei... [more]
GLYA_DIAST1.468e-3251.52Serine hydroxymethyltransferase OS=Diaphorobacter ... [more]
GLYA_CLOK51.468e-3247.22Serine hydroxymethyltransferase OS=Clostridium klu... [more]
GLYA_CLOK11.468e-3247.22Serine hydroxymethyltransferase OS=Clostridium klu... [more]
GLYA_ACISJ1.468e-3251.52Serine hydroxymethyltransferase OS=Acidovorax sp. ... [more]
GLYA_STRM51.917e-3249.64Serine hydroxymethyltransferase OS=Stenotrophomona... [more]
GLYA_LAWIP1.917e-3241.58Serine hydroxymethyltransferase OS=Lawsonia intrac... [more]
GLYA_COXBU1.917e-3248.20Serine hydroxymethyltransferase OS=Coxiella burnet... [more]
GLYA_COXBR1.917e-3248.20Serine hydroxymethyltransferase OS=Coxiella burnet... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-005-A11-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679883 ID=EY679883; Name=EY679883; organism=Citrus sinensis; type=EST; length=873bp
GAAGGGAGTGAAAGAGATTAACAAACAAGGGAAGGAGGTGTTTTATGATT
ATGAAGAAAAAATAAATCAAGCTGTCTTTCCTGGACTCCAAGGTGGCCCA
CACAACCACACAATTACTGGTTTAGCAGTTGCCTTGAAACAGGCCACTAC
TCCAGAGTATAAAGCCTATCAAGAGCAAGTTCTGAGCAATTGCTCGAAAT
TTGCACAGACTCTGCTCGAGATGGGCTATGAACTTGTTTCTGGTGGAACT
GAGAACCATCTAGTGTTGGTGAATTTGAAAAACAAGAGAATTGATGGTTC
CAGAGTTGAAAAAGTGTTGGAAGCTGTTCATATTGCAGCCAACAAAAACA
CTGTTCCTGGGGATGTGTCAGCCATGGTTCCAGGTGGCATCAGGATGGGA
ACTCCGGCTCTTACTTCTAGGGGATTTGTTGAGGAGGATTTTGCCAAGGT
AGCATATTTCTTTGATGCTGCTGTGAAGTTGGCTGTGAAGATCAAGTCTG
AAACTCAAGGAACAAAGTTGAAAGATTTCGTGGCCACAACACAGTCCGCT
AACTTCCAATCCAAGATTGCGAAACTTCGCCATGATGTTGAGGAGTATGC
AAAGCAGTTCCCCACAATTGGGTTTGAAAAGGAAACCATGAAGTACAAAA
ACTGAAAAAAAAACCCCACTGTACTAAAGCACCAAAAACCCGCCCGGATG
ACCTTTTTTTAACCCAAGCCGACAAAGGGATAAATGGTACTTTAGGATTA
TGAACCTTGGAATAACTTTCCAACCCTGGGATTTGGGCCCTTTTTTGAAA
ACCCATAACCACCAAACCTTGGTTTTTAAATCCAATTAATGGTTAAAAAG
AGAACCCTGGGTTTTTACGGGAG
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