EY679883

Overview
NameEY679883
Unique NameEY679883
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length873
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679883 vs. ExPASy Swiss-Prot
Match: GLYA_CELJU (Serine hydroxymethyltransferase OS=Cellvibrio japonicus (strain Ueda107) GN=glyA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.271e-32
Identity = 76/190 (40.00%), Postives = 106/190 (55.79%), Query Frame = 2
Query:   47 DYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSKIAKLRHDVEEYAKQFP 613
            + E+K+N AVFPG QGGP  H I   A++ K+A TPEYK YQ+QV+ N    A T +E G ++VSGGTENHL+LV+L  K   G   ++ L   HI  NKN VP D  S  V  GIR+GTPA+T+RGF E +  ++  +                   + D  A  ++ N  + I +++  V    K+FP
Sbjct:  247 EIEKKLNSAVFPGGQGGPLMHVIAAKAISFKEAMTPEYKDYQQQVVKNAKAMAATFIERGIKIVSGGTENHLMLVDLIGKPYSGKDADEALGKAHITVNKNAVPNDPRSPFVTSGIRVGTPAITTRGFKEAECIQLTNW-------------------ICDIFAALEAGNADAVIEQVKTRVASLCKEFP 417          
BLAST of EY679883 vs. ExPASy Swiss-Prot
Match: GLYA_POLSJ (Serine hydroxymethyltransferase OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=glyA PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.579e-32
Identity = 67/132 (50.76%), Postives = 92/132 (69.70%), Query Frame = 2
Query:   47 DYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEED 439
            ++E+ IN A+FPGLQGGP  H I   AVA K+A +PE+K YQ+QVL+N    A+TL + G  +VSG TE+HL+LV+L+ K I G   E VL + H+  NKN +P D    MV  G+R+GTPA+T+RGF +E+
Sbjct:  244 EHEKAINSAIFPGLQGGPLMHVIAAKAVAFKEALSPEFKTYQQQVLTNARIVAETLTQRGLRIVSGRTESHLMLVDLRAKGITGKEAEAVLGSAHMTINKNAIPNDPEKPMVTSGVRIGTPAMTTRGFKDEE 375          
BLAST of EY679883 vs. ExPASy Swiss-Prot
Match: GLYA_MOOTA (Serine hydroxymethyltransferase OS=Moorella thermoacetica (strain ATCC 39073) GN=glyA PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.579e-32
Identity = 71/144 (49.31%), Postives = 93/144 (64.58%), Query Frame = 2
Query:   47 DYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 475
            +Y   I++AVFPG+QGGP  H I   AVALK+A  PE+K YQEQ+++N    A  L+  G+ LVSGGT+NHL+LV+L+NK I G   E +L +V I  NKN +P D     V  GIR+GT ALTSRG   +   +VA   D A+
Sbjct:  243 EYARDIDKAVFPGVQGGPLMHVIAAKAVALKEAMLPEFKRYQEQIVTNARTLADALMGYGFNLVSGGTDNHLMLVDLRNKNITGREAEDILASVQITVNKNAIPFDPQKPSVTSGIRLGTAALTSRGMDADAMVQVARAIDLAL 386          
BLAST of EY679883 vs. ExPASy Swiss-Prot
Match: GLYA_ORITB (Serine hydroxymethyltransferase OS=Orientia tsutsugamushi (strain Boryong) GN=glyA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.286e-32
Identity = 77/188 (40.96%), Postives = 107/188 (56.91%), Query Frame = 2
Query:   56 EKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA-YFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSKIAKLRHDVEEYAKQFP 613
            +KIN AVFPG+QGGP  H I   A+A  +A  P+YK Y  QV+ N    A+ L + GY +++GGT+NH++LV+L+ K I G   E +L+A  I  NK  +P D  S  +  GIR+GTPA T+RGF E +F  V  Y  D    +A+ IKS     K +    T    +  S I + +H V+E    FP
Sbjct:  239 KKINSAVFPGMQGGPLMHVIAAKAIAFSEALMPQYKEYINQVMLNAKVLAKLLQDRGYNILTGGTDNHMLLVDLRGKNITGQEAEYLLDAAGITCNKQVMPFDTTSPTITSGIRLGTPACTTRGFKENEFITVGKYIADILDNIAI-IKS---AKKNEGITITEIEKSLNSVITRTKHHVQELCNCFP 422          
BLAST of EY679883 vs. ExPASy Swiss-Prot
Match: GLYA_GLUOX (Serine hydroxymethyltransferase OS=Gluconobacter oxydans GN=glyA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.286e-32
Identity = 73/190 (38.42%), Postives = 109/190 (57.37%), Query Frame = 2
Query:   47 DYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSKIAKLRHDVEEYAKQFP 613
            D  +K+N AVFPGLQGGP  H I G AVA  +A + E+KAYQ++VL+N    A  L   G+++V+GGT++HL+LV+L+ K++ G   E +LE   I ANKN +P D     V  GIR+G+PA T+RGF E +F +V    D  +                   A  +  N ++  A++  +V+   ++FP
Sbjct:  256 DLAKKVNSAVFPGLQGGPLMHVIAGKAVAFGEALSDEFKAYQKRVLANARALADELQNRGFDIVTGGTDSHLILVDLRPKKVTGKLAEAILERAGITANKNAIPFDPEKPFVTSGIRLGSPAATARGFGEAEFREVGRMIDEVL------------------TAALEEDNAEAVTARVHEEVKALCRRFP 427          
BLAST of EY679883 vs. ExPASy Swiss-Prot
Match: GLYA_ACIC1 (Serine hydroxymethyltransferase OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=glyA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.286e-32
Identity = 76/195 (38.97%), Postives = 109/195 (55.90%), Query Frame = 2
Query:   50 YEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSKIAKLRHDVEEYAKQFPTIGFEK 631
            Y + +++AVFPGLQGGPHNHT   +AVAL +A  PE++ Y   +++N +  A+ LL  G++LVSGGT+NHL+LV+L +K + G  V + L+   I  N NTVP D      P GIR+GTPA+TSRG    +  ++A + D       K   E          A  Q         ++  +V E  K FPT G ++
Sbjct:  249 YAKALDKAVFPGLQGGPHNHTTAAIAVALLEAMQPEFRDYARNIVANAAVLAEELLARGFDLVSGGTDNHLILVDLTSKGVAGKPVARALDRAGIELNYNTVPFDPRKPFDPSGIRLGTPAVTSRGMGPAEMRQIAAWIDEVTTAVAKGDEEA-------LAAVEQ---------RVAGEVRELTKNFPTPGLDR 427          
BLAST of EY679883 vs. ExPASy Swiss-Prot
Match: GLYA_RHOFD (Serine hydroxymethyltransferase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=glyA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.516e-32
Identity = 66/131 (50.38%), Postives = 91/131 (69.47%), Query Frame = 2
Query:   50 YEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEED 439
            +E+ IN A+FPGLQGGP  H I   AVA K+A  PE+K YQ+QVL+N    A+TL+  G  +VSG TE+H++LV+L++K I G   E VL + H+  NKN +P D    MV  G+R+GTPA+T+RGF +E+
Sbjct:  245 HEKAINSAIFPGLQGGPLMHVIAAKAVAFKEALQPEFKVYQQQVLTNARVVAETLVSRGLRIVSGRTESHVMLVDLRSKSITGKEAEAVLGSAHMTINKNAIPNDPEKPMVTSGVRIGTPAMTTRGFKDEE 375          
BLAST of EY679883 vs. ExPASy Swiss-Prot
Match: GLYA_SHISS (Serine hydroxymethyltransferase OS=Shigella sonnei (strain Ss046) GN=glyA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.243e-31
Identity = 72/145 (49.66%), Postives = 92/145 (63.45%), Query Frame = 2
Query:   23 KQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 454
            K G E  Y   +K+N AVFPG QGGP  H I G AVALK+A  PE+K YQ+QV  N     +  LE GY++VSGGT+NHL LV+L +K + G   +  L   +I  NKN+VP D  S  V  GIR+GTPA+T RGF E +  ++A
Sbjct:  242 KGGSEELY---KKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELA 383          
BLAST of EY679883 vs. ExPASy Swiss-Prot
Match: GLYA_SHIFL (Serine hydroxymethyltransferase OS=Shigella flexneri GN=glyA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.243e-31
Identity = 72/145 (49.66%), Postives = 92/145 (63.45%), Query Frame = 2
Query:   23 KQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 454
            K G E  Y   +K+N AVFPG QGGP  H I G AVALK+A  PE+K YQ+QV  N     +  LE GY++VSGGT+NHL LV+L +K + G   +  L   +I  NKN+VP D  S  V  GIR+GTPA+T RGF E +  ++A
Sbjct:  242 KGGSEELY---KKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELA 383          
BLAST of EY679883 vs. ExPASy Swiss-Prot
Match: GLYA_SHIF8 (Serine hydroxymethyltransferase OS=Shigella flexneri serotype 5b (strain 8401) GN=glyA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.243e-31
Identity = 72/145 (49.66%), Postives = 92/145 (63.45%), Query Frame = 2
Query:   23 KQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 454
            K G E  Y   +K+N AVFPG QGGP  H I G AVALK+A  PE+K YQ+QV  N     +  LE GY++VSGGT+NHL LV+L +K + G   +  L   +I  NKN+VP D  S  V  GIR+GTPA+T RGF E +  ++A
Sbjct:  242 KGGSEELY---KKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELA 383          
The following BLAST results are available for this feature:
BLAST of EY679883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_CELJU4.271e-3240.00Serine hydroxymethyltransferase OS=Cellvibrio japo... [more]
GLYA_POLSJ5.579e-3250.76Serine hydroxymethyltransferase OS=Polaromonas sp.... [more]
GLYA_MOOTA5.579e-3249.31Serine hydroxymethyltransferase OS=Moorella thermo... [more]
GLYA_ORITB7.286e-3240.96Serine hydroxymethyltransferase OS=Orientia tsutsu... [more]
GLYA_GLUOX7.286e-3238.42Serine hydroxymethyltransferase OS=Gluconobacter o... [more]
GLYA_ACIC17.286e-3238.97Serine hydroxymethyltransferase OS=Acidothermus ce... [more]
GLYA_RHOFD9.516e-3250.38Serine hydroxymethyltransferase OS=Rhodoferax ferr... [more]
GLYA_SHISS1.243e-3149.66Serine hydroxymethyltransferase OS=Shigella sonnei... [more]
GLYA_SHIFL1.243e-3149.66Serine hydroxymethyltransferase OS=Shigella flexne... [more]
GLYA_SHIF81.243e-3149.66Serine hydroxymethyltransferase OS=Shigella flexne... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-005-A11-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679883 ID=EY679883; Name=EY679883; organism=Citrus sinensis; type=EST; length=873bp
GAAGGGAGTGAAAGAGATTAACAAACAAGGGAAGGAGGTGTTTTATGATT
ATGAAGAAAAAATAAATCAAGCTGTCTTTCCTGGACTCCAAGGTGGCCCA
CACAACCACACAATTACTGGTTTAGCAGTTGCCTTGAAACAGGCCACTAC
TCCAGAGTATAAAGCCTATCAAGAGCAAGTTCTGAGCAATTGCTCGAAAT
TTGCACAGACTCTGCTCGAGATGGGCTATGAACTTGTTTCTGGTGGAACT
GAGAACCATCTAGTGTTGGTGAATTTGAAAAACAAGAGAATTGATGGTTC
CAGAGTTGAAAAAGTGTTGGAAGCTGTTCATATTGCAGCCAACAAAAACA
CTGTTCCTGGGGATGTGTCAGCCATGGTTCCAGGTGGCATCAGGATGGGA
ACTCCGGCTCTTACTTCTAGGGGATTTGTTGAGGAGGATTTTGCCAAGGT
AGCATATTTCTTTGATGCTGCTGTGAAGTTGGCTGTGAAGATCAAGTCTG
AAACTCAAGGAACAAAGTTGAAAGATTTCGTGGCCACAACACAGTCCGCT
AACTTCCAATCCAAGATTGCGAAACTTCGCCATGATGTTGAGGAGTATGC
AAAGCAGTTCCCCACAATTGGGTTTGAAAAGGAAACCATGAAGTACAAAA
ACTGAAAAAAAAACCCCACTGTACTAAAGCACCAAAAACCCGCCCGGATG
ACCTTTTTTTAACCCAAGCCGACAAAGGGATAAATGGTACTTTAGGATTA
TGAACCTTGGAATAACTTTCCAACCCTGGGATTTGGGCCCTTTTTTGAAA
ACCCATAACCACCAAACCTTGGTTTTTAAATCCAATTAATGGTTAAAAAG
AGAACCCTGGGTTTTTACGGGAG
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