FC871369

Overview
NameFC871369
Unique NameFC871369
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_STAA2 (30S ribosomal protein S5 OS=Staphylococcus aureus (strain JH1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.663e-15
Identity = 51/141 (36.17%), Postives = 76/141 (53.90%), Query Frame = 3
Query:  312 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734
            + ++ V+ I  V K  + G+R RF A VVVGD +G VG G   ++EV  AI+ A+  AK  ++ V R           T P  +TG+ GS +V M PA  G G++A    + VL+ AGI D+ + S GS   + N V+  +
Sbjct:   10 EFEERVVTINRVAKVVKGGRRFRFTALVVVGDKNGRVGFGTGKAQEVPEAIKKAVEAAKKDLVVVPR--------VEGTTPHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPI-NMVRATI 141          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_STAA1 (30S ribosomal protein S5 OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.663e-15
Identity = 51/141 (36.17%), Postives = 76/141 (53.90%), Query Frame = 3
Query:  312 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734
            + ++ V+ I  V K  + G+R RF A VVVGD +G VG G   ++EV  AI+ A+  AK  ++ V R           T P  +TG+ GS +V M PA  G G++A    + VL+ AGI D+ + S GS   + N V+  +
Sbjct:   10 EFEERVVTINRVAKVVKGGRRFRFTALVVVGDKNGRVGFGTGKAQEVPEAIKKAVEAAKKDLVVVPR--------VEGTTPHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPI-NMVRATI 141          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_PELPB (30S ribosomal protein S5 OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.663e-15
Identity = 50/131 (38.17%), Postives = 71/131 (54.20%), Query Frame = 3
Query:  315 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI--PVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGST 701
            LK++++ I    K  + G+R  F A VVVGD +GHVG G+  + EV  AI   I   K +VI  P+ +G          T+P ++  K GS  V M PA  G G++A    + VL+ AGI D+ T S GS+
Sbjct:   16 LKEKLVHINRTAKVVKGGKRFGFNAIVVVGDKEGHVGYGLGKANEVQDAIAKGIEDGKKNVIKVPIVKG----------TIPHQIVAKFGSAKVMMKPATPGTGLIAGGAVRAVLEMAGIHDILTKSLGSS 136          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_LYSSC (30S ribosomal protein S5 OS=Lysinibacillus sphaericus (strain C3-41) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.663e-15
Identity = 52/141 (36.88%), Postives = 79/141 (56.03%), Query Frame = 3
Query:  312 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734
            +L++ V+ I  V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR A+  AK +++ V R      +G   T P  V G+ G+  + + PA  G G++A    + VL+ AGI D+ + S GS   + N V+  +
Sbjct:   11 ELEERVVTINRVAKVVKGGRRFRFTALVVVGDRNGHVGFGTGKAQEVPDAIRKAVEDAKKNLVEVPR------VG--GTTPHLVLGRFGAGEILIKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPI-NMVRATV 142          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_ENTFA (30S ribosomal protein S5 OS=Enterococcus faecalis GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.663e-15
Identity = 51/129 (39.53%), Postives = 73/129 (56.59%), Query Frame = 3
Query:  312 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGS 698
            +L+D V+ I  V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR AI  AK +++ V        +G   T+P +V G  G   + M PA  G+G+ A    + VL+ AG+ D+ + S GS
Sbjct:   10 ELEDRVVAINRVTKVVKGGRRLRFAALVVVGDKNGHVGFGTGKAQEVPEAIRKAIEDAKKNLVEV------PMVG--STIPHEVIGVFGGGRILMKPAVEGSGVAAGGPVRAVLELAGVADITSKSLGS 130          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_BACLD (30S ribosomal protein S5 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.663e-15
Identity = 46/129 (35.66%), Postives = 75/129 (58.14%), Query Frame = 3
Query:  312 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGS 698
            +L++ ++ +  V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR A+  AK ++I V        +G   T+P ++ G+ G+  + + PA  G G++A    + VL+ AG+ D+ + S GS
Sbjct:   12 ELEERLVTVNRVAKVVKGGRRFRFAALVVVGDKNGHVGFGTGKAQEVPEAIRKAVEDAKKNLIEV------PMVGT--TIPHEIIGRFGAGNILLKPASEGTGVIAGGPVRAVLELAGVSDILSKSLGS 132          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_STAES (30S ribosomal protein S5 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.131e-14
Identity = 51/141 (36.17%), Postives = 76/141 (53.90%), Query Frame = 3
Query:  312 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734
            + ++ V+ I  V K  + G+R RF A VVVGD +G VG G   ++EV  AI+ A+  AK  ++ V R           T P  +TG+ GS +V M PA  G G++A    + VL+ AGI D+ + S GS   + N V+  +
Sbjct:   10 EFEERVVTINRVAKVVKGGRRFRFTALVVVGDKNGRVGFGTGKAQEVPEAIKKAVEAAKKDLVVVPR--------VEGTTPHTITGQYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPI-NMVRATI 141          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_STAEQ (30S ribosomal protein S5 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.131e-14
Identity = 51/141 (36.17%), Postives = 76/141 (53.90%), Query Frame = 3
Query:  312 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734
            + ++ V+ I  V K  + G+R RF A VVVGD +G VG G   ++EV  AI+ A+  AK  ++ V R           T P  +TG+ GS +V M PA  G G++A    + VL+ AGI D+ + S GS   + N V+  +
Sbjct:   10 EFEERVVTINRVAKVVKGGRRFRFTALVVVGDKNGRVGFGTGKAQEVPEAIKKAVEAAKKDLVVVPR--------VEGTTPHTITGQYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPI-NMVRATI 141          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_GEOTN (30S ribosomal protein S5 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.131e-14
Identity = 50/129 (38.76%), Postives = 74/129 (57.36%), Query Frame = 3
Query:  312 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGS 698
            +L++ V+ I  V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR AI  AK +++ V        +G   T+P +V G  G+  + + PA  G G++A    + VL+ AGI D+ + S GS
Sbjct:   10 ELEERVVAINRVAKVVKGGRRLRFSALVVVGDKNGHVGFGTGKAQEVPEAIRKAIEDAKKNLMEV------PIVGT--TIPHEVIGHFGAGEIILKPASEGTGVIAGGPARAVLELAGISDILSKSIGS 130          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_BACHK (30S ribosomal protein S5 OS=Bacillus thuringiensis subsp. konkukian GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.131e-14
Identity = 50/129 (38.76%), Postives = 73/129 (56.59%), Query Frame = 3
Query:  312 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGS 698
            +L++ V+ I  V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR AI  AK ++I V        +G   T+P  + G  G+  V + PA  G G++A    + VL+ AG+ D+ + S GS
Sbjct:   10 ELEERVVTINRVAKVVKGGRRFRFAALVVVGDKNGHVGFGTGKAQEVPDAIRKAIEDAKKNLIAV------PLVGT--TIPHTINGHFGAGEVFLKPAAEGTGVIAGGPVRAVLELAGVQDILSKSLGS 130          
The following BLAST results are available for this feature:
BLAST of FC871369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 369
Match NameE-valueIdentityDescription
RS5_STAA28.663e-1536.1730S ribosomal protein S5 OS=Staphylococcus aureus ... [more]
RS5_STAA18.663e-1536.1730S ribosomal protein S5 OS=Staphylococcus aureus ... [more]
RS5_PELPB8.663e-1538.1730S ribosomal protein S5 OS=Pelodictyon phaeoclath... [more]
RS5_LYSSC8.663e-1536.8830S ribosomal protein S5 OS=Lysinibacillus sphaeri... [more]
RS5_ENTFA8.663e-1539.5330S ribosomal protein S5 OS=Enterococcus faecalis ... [more]
RS5_BACLD8.663e-1535.6630S ribosomal protein S5 OS=Bacillus licheniformis... [more]
RS5_STAES1.131e-1436.1730S ribosomal protein S5 OS=Staphylococcus epiderm... [more]
RS5_STAEQ1.131e-1436.1730S ribosomal protein S5 OS=Staphylococcus epiderm... [more]
RS5_GEOTN1.131e-1438.7630S ribosomal protein S5 OS=Geobacillus thermodeni... [more]
RS5_BACHK1.131e-1438.7630S ribosomal protein S5 OS=Bacillus thuringiensis... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2CD03FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2CD03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871369 ID=FC871369; Name=FC871369; organism=Citrus sinensis; type=EST; length=773bp
CCTCGCATTTTTCTTTCTCCCAAAGCCCAAACCCTAGCTTCAATCCCTAA
ACACACAAGAACAAAACCATGGCTGAACGAGGTGGCGAGCGCGGTGCATT
CGGACGCGGCTTCGGCCGTGGTGGACGGGGCGACCGTGGAGGCCCACGTG
GCCGTCGCCGCGCTGGACGCAGAGAGGAAGAAGAGAAGTGGGTCCCAGTC
ACGAAACTCGGCCGTCTGGTGAGAGAAGGCAAGATCAGGAGCCTCGAGCA
AATCTACCTCCACTCGCTCCCAATCAAGGAGTATCAAATCATCGACACGC
TTATCGGCCACAAATTGAAGGACGAGGTCATGAAGATCATGCCGGTGCAG
AAACAGACACGTGCCGGTCAGAGGACGAGGTTCAAGGCCTTCGTCGTCGT
CGGTGACACGGACGGCCACGTGGGTCTTGGCGTTAAGTGCTCCAAAGAGG
TTGCCACTGCCATCCGTGGCGCTATCATATTGGCGAAGCTGTCAGTGATT
CCGGTGAGAAGGGGTTACTGGGGTAACAAGATCGGGAGGCCACACACCGT
GCCGTGTAAGGTGACCGGTAAGTGTGGCAGTGTCACCGTGAGGATGGTTC
CGGCCCCACGTGGTGCCGGAATTGTGGCGGCTAGGGTTCCAAAGAAGGTG
CTGCAGTTTGCTGGTATTGACGATGTTTTCACATCTTCTCGTGGGTCGAC
CAAGACTCTTGGAAACTTTGTCAAGGGCAACCTTTGAGTGGTTGTTGAAG
ACATATGGCTTCCTTACCCCTGA
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