FC871369

Overview
NameFC871369
Unique NameFC871369
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_LEPBJ (30S ribosomal protein S5 OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.930e-14
Identity = 51/138 (36.96%), Postives = 74/138 (53.62%), Query Frame = 3
Query:  321 DEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734
            ++V+KI  V K  + G+R  F A  VVGD  G VG+G   + EV  AIR +I  AK  ++ +          + HT+P +V GK  S  V + P+  G GI+A    + +++ AGI DV T S GS+  + N VK  L
Sbjct:   13 EKVVKIDRVAKVVKGGRRFSFNALSVVGDQKGKVGIGFGKANEVPDAIRKSIEAAKKHLVKINF--------KGHTIPHEVVGKFKSARVILKPSTAGTGIIAGASVRSIVEKAGIQDVLTKSWGSSNPV-NIVKATL 141          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_CHLT3 (30S ribosomal protein S5 OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.930e-14
Identity = 50/131 (38.17%), Postives = 72/131 (54.96%), Query Frame = 3
Query:  315 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI--PVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGST 701
            LK++++ I    K  + G+R  F A VVVGD +GHVG G+  + EV  AI   I  AK +VI  P+ +G          T+P ++  K G+  V M PA  G G++A    + VL+ AG+ DV T S GS+
Sbjct:   16 LKEKLVHINRTAKVVKGGKRFGFNAIVVVGDGEGHVGYGLGKANEVQDAIAKGIEDAKKNVIEVPIIKG----------TIPHQIFAKFGAAKVLMKPATPGTGLIAGGAVRAVLEMAGVKDVLTKSLGSS 136          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_CHLPD (30S ribosomal protein S5 OS=Chlorobium phaeobacteroides (strain DSM 266) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.930e-14
Identity = 49/131 (37.40%), Postives = 71/131 (54.20%), Query Frame = 3
Query:  315 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI--PVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGST 701
            LK++++ I    K  + G+R  F A +VVGD +GHVG G+  + EV  AI   +   K +VI  P+ +G          T+P ++  K GS  V M PA  G G++A    + VL+ AGI DV T S GS+
Sbjct:   16 LKEKLVHINRTAKVVKGGKRFGFNAIIVVGDKEGHVGYGLGKANEVQDAIAKGVEDGKKNVIKVPIVKG----------TIPHQIIAKYGSAKVLMKPATPGTGLIAGGAVRAVLEMAGIHDVLTKSLGSS 136          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_CHLCH (30S ribosomal protein S5 OS=Chlorobium chlorochromatii (strain CaD3) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.930e-14
Identity = 50/131 (38.17%), Postives = 71/131 (54.20%), Query Frame = 3
Query:  315 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI--PVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGST 701
            LK++++ I    K  + G+R  F A VVVGD +GHVG G+  + EV  AI   I   K +VI  P+ +G          T+P ++  K GS  V M PA  G G++A    + VL+ AGI D+ T S GS+
Sbjct:   16 LKEKLVHINRTAKVVKGGKRFGFNAIVVVGDKEGHVGYGLGKANEVQDAIAKGIEDGKKNVIKVPIVKG----------TIPHQIVVKYGSAKVMMKPATPGTGLIAGGAVRAVLEMAGIHDILTKSLGSS 136          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_CALS8 (30S ribosomal protein S5 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.930e-14
Identity = 51/128 (39.84%), Postives = 70/128 (54.69%), Query Frame = 3
Query:  315 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGS 698
            LK+ V+ I  V K  + G+R +F A VVVGD +GHVG G   + E+  AIR AI  AK  +I V        +G   T+P +  G  G+  V + PAP G G++A    + V + AGI D+ T S GS
Sbjct:   13 LKERVVNINRVAKVVKGGKRLKFSAIVVVGDENGHVGAGHGKAAEIPDAIRKAIEDAKKHLIEV------PIVGT--TIPHEAIGDFGASKVLIKPAPEGTGVIAGGAVRAVCELAGIKDIRTKSLGS 132          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_PELLD (30S ribosomal protein S5 OS=Pelodictyon luteolum (strain DSM 273) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.520e-14
Identity = 48/131 (36.64%), Postives = 71/131 (54.20%), Query Frame = 3
Query:  315 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSV--IPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGST 701
            LK++++ I    K  + G+R  F A VVVGD +GHVG G+  + EV  AI   +   K +V  +P+ +G          T+P ++  K GS  V M PA  G G++A    + VL+ AG+ DV T S GS+
Sbjct:   15 LKEKLVHINRTAKVVKGGKRFGFNAIVVVGDKEGHVGYGLGKANEVQDAIAKGVEDGKKNVVKVPIIKG----------TIPHQIVAKYGSAKVLMKPATPGTGLIAGGAVRAVLEMAGVRDVLTKSLGSS 135          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_MYCPE (30S ribosomal protein S5 OS=Mycoplasma penetrans GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.520e-14
Identity = 47/140 (33.57%), Postives = 78/140 (55.71%), Query Frame = 3
Query:  315 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734
            L+++++ +  + K T+ G+  RF A  V+GD  G+VG G+  S EV  AIR A+  AK ++  V       K+ +  T+  +V GK G+  V + PAP+G G++A    K VL+  G  DV++ + G   +L N V+  +
Sbjct:   78 LEEKIVGVKKISKTTKGGRNMRFSALAVIGDRKGNVGFGLGKSIEVPVAIRKALKSAKNNMYKV-------KMNKNFTLYHEVIGKHGAGKVLIKPAPKGTGVIAGGPIKVVLELCGFKDVYSKNLGKNTSL-NMVRATI 209          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_MYCGA (30S ribosomal protein S5 OS=Mycoplasma gallisepticum GN=rpsE PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.520e-14
Identity = 48/141 (34.04%), Postives = 78/141 (55.32%), Query Frame = 3
Query:  312 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734
            + +++++KI  + K T+ G+  RF A VVVGD  G VG G+  + EV  AI+ A+ +A+ +V  +      NK G   T+   V G+ G+  V + PAP G GI+A    + V++ AG  DV+T + G    + N V+  +
Sbjct:   71 EFEEKIVKISRISKTTKGGRTMRFSALVVVGDRKGRVGFGIAKALEVPNAIKKALKMAENNVQKIAM----NKHG---TLFHDVLGRSGAAKVLIKPAPSGTGIIAGGAIRAVVELAGFTDVYTKNMGKNTPI-NMVRATM 203          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_CLOBL (30S ribosomal protein S5 OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.520e-14
Identity = 50/128 (39.06%), Postives = 71/128 (55.47%), Query Frame = 3
Query:  315 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGS 698
            LK++V+ I  V K  + G+  RF   VVVGD  GHVG+G   S E+  AIR AI  AK +++ V+       +G   TVP  + GK G   V ++ A  G G++A    + VL+ AG+ DV   S+GS
Sbjct:   10 LKEKVVHINRVAKVVKGGRNFRFSVLVVVGDEAGHVGVGTGKSIEIPEAIRKAIEDAKKNIVEVK------TVGT--TVPHDIIGKFGKGEVLIMTAKEGTGVIAGGPVRAVLELAGLKDVRAKSKGS 129          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_CLOBH (30S ribosomal protein S5 OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.520e-14
Identity = 50/128 (39.06%), Postives = 71/128 (55.47%), Query Frame = 3
Query:  315 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGS 698
            LK++V+ I  V K  + G+  RF   VVVGD  GHVG+G   S E+  AIR AI  AK +++ V+       +G   TVP  + GK G   V ++ A  G G++A    + VL+ AG+ DV   S+GS
Sbjct:   10 LKEKVVHINRVAKVVKGGRNFRFSVLVVVGDEAGHVGVGTGKSIEIPEAIRKAIEDAKKNIVEVK------TVGT--TVPHDIIGKFGKGEVLIMTAKEGTGVIAGGPVRAVLELAGLKDVRAKSKGS 129          
The following BLAST results are available for this feature:
BLAST of FC871369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 369
Match NameE-valueIdentityDescription
RS5_LEPBJ1.930e-1436.9630S ribosomal protein S5 OS=Leptospira borgpeterse... [more]
RS5_CHLT31.930e-1438.1730S ribosomal protein S5 OS=Chloroherpeton thalass... [more]
RS5_CHLPD1.930e-1437.4030S ribosomal protein S5 OS=Chlorobium phaeobacter... [more]
RS5_CHLCH1.930e-1438.1730S ribosomal protein S5 OS=Chlorobium chlorochrom... [more]
RS5_CALS81.930e-1439.8430S ribosomal protein S5 OS=Caldicellulosiruptor s... [more]
RS5_PELLD2.520e-1436.6430S ribosomal protein S5 OS=Pelodictyon luteolum (... [more]
RS5_MYCPE2.520e-1433.5730S ribosomal protein S5 OS=Mycoplasma penetrans G... [more]
RS5_MYCGA2.520e-1434.0430S ribosomal protein S5 OS=Mycoplasma galliseptic... [more]
RS5_CLOBL2.520e-1439.0630S ribosomal protein S5 OS=Clostridium botulinum ... [more]
RS5_CLOBH2.520e-1439.0630S ribosomal protein S5 OS=Clostridium botulinum ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2CD03FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2CD03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871369 ID=FC871369; Name=FC871369; organism=Citrus sinensis; type=EST; length=773bp
CCTCGCATTTTTCTTTCTCCCAAAGCCCAAACCCTAGCTTCAATCCCTAA
ACACACAAGAACAAAACCATGGCTGAACGAGGTGGCGAGCGCGGTGCATT
CGGACGCGGCTTCGGCCGTGGTGGACGGGGCGACCGTGGAGGCCCACGTG
GCCGTCGCCGCGCTGGACGCAGAGAGGAAGAAGAGAAGTGGGTCCCAGTC
ACGAAACTCGGCCGTCTGGTGAGAGAAGGCAAGATCAGGAGCCTCGAGCA
AATCTACCTCCACTCGCTCCCAATCAAGGAGTATCAAATCATCGACACGC
TTATCGGCCACAAATTGAAGGACGAGGTCATGAAGATCATGCCGGTGCAG
AAACAGACACGTGCCGGTCAGAGGACGAGGTTCAAGGCCTTCGTCGTCGT
CGGTGACACGGACGGCCACGTGGGTCTTGGCGTTAAGTGCTCCAAAGAGG
TTGCCACTGCCATCCGTGGCGCTATCATATTGGCGAAGCTGTCAGTGATT
CCGGTGAGAAGGGGTTACTGGGGTAACAAGATCGGGAGGCCACACACCGT
GCCGTGTAAGGTGACCGGTAAGTGTGGCAGTGTCACCGTGAGGATGGTTC
CGGCCCCACGTGGTGCCGGAATTGTGGCGGCTAGGGTTCCAAAGAAGGTG
CTGCAGTTTGCTGGTATTGACGATGTTTTCACATCTTCTCGTGGGTCGAC
CAAGACTCTTGGAAACTTTGTCAAGGGCAACCTTTGAGTGGTTGTTGAAG
ACATATGGCTTCCTTACCCCTGA
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