FC871369
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_LEPBJ (30S ribosomal protein S5 OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=rpsE PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.930e-14 Identity = 51/138 (36.96%), Postives = 74/138 (53.62%), Query Frame = 3 Query: 321 DEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734 ++V+KI V K + G+R F A VVGD G VG+G + EV AIR +I AK ++ + + HT+P +V GK S V + P+ G GI+A + +++ AGI DV T S GS+ + N VK L Sbjct: 13 EKVVKIDRVAKVVKGGRRFSFNALSVVGDQKGKVGIGFGKANEVPDAIRKSIEAAKKHLVKINF--------KGHTIPHEVVGKFKSARVILKPSTAGTGIIAGASVRSIVEKAGIQDVLTKSWGSSNPV-NIVKATL 141
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_CHLT3 (30S ribosomal protein S5 OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=rpsE PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.930e-14 Identity = 50/131 (38.17%), Postives = 72/131 (54.96%), Query Frame = 3 Query: 315 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI--PVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGST 701 LK++++ I K + G+R F A VVVGD +GHVG G+ + EV AI I AK +VI P+ +G T+P ++ K G+ V M PA G G++A + VL+ AG+ DV T S GS+ Sbjct: 16 LKEKLVHINRTAKVVKGGKRFGFNAIVVVGDGEGHVGYGLGKANEVQDAIAKGIEDAKKNVIEVPIIKG----------TIPHQIFAKFGAAKVLMKPATPGTGLIAGGAVRAVLEMAGVKDVLTKSLGSS 136
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_CHLPD (30S ribosomal protein S5 OS=Chlorobium phaeobacteroides (strain DSM 266) GN=rpsE PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.930e-14 Identity = 49/131 (37.40%), Postives = 71/131 (54.20%), Query Frame = 3 Query: 315 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI--PVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGST 701 LK++++ I K + G+R F A +VVGD +GHVG G+ + EV AI + K +VI P+ +G T+P ++ K GS V M PA G G++A + VL+ AGI DV T S GS+ Sbjct: 16 LKEKLVHINRTAKVVKGGKRFGFNAIIVVGDKEGHVGYGLGKANEVQDAIAKGVEDGKKNVIKVPIVKG----------TIPHQIIAKYGSAKVLMKPATPGTGLIAGGAVRAVLEMAGIHDVLTKSLGSS 136
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_CHLCH (30S ribosomal protein S5 OS=Chlorobium chlorochromatii (strain CaD3) GN=rpsE PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.930e-14 Identity = 50/131 (38.17%), Postives = 71/131 (54.20%), Query Frame = 3 Query: 315 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI--PVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGST 701 LK++++ I K + G+R F A VVVGD +GHVG G+ + EV AI I K +VI P+ +G T+P ++ K GS V M PA G G++A + VL+ AGI D+ T S GS+ Sbjct: 16 LKEKLVHINRTAKVVKGGKRFGFNAIVVVGDKEGHVGYGLGKANEVQDAIAKGIEDGKKNVIKVPIVKG----------TIPHQIVVKYGSAKVMMKPATPGTGLIAGGAVRAVLEMAGIHDILTKSLGSS 136
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_CALS8 (30S ribosomal protein S5 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=rpsE PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.930e-14 Identity = 51/128 (39.84%), Postives = 70/128 (54.69%), Query Frame = 3 Query: 315 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGS 698 LK+ V+ I V K + G+R +F A VVVGD +GHVG G + E+ AIR AI AK +I V +G T+P + G G+ V + PAP G G++A + V + AGI D+ T S GS Sbjct: 13 LKERVVNINRVAKVVKGGKRLKFSAIVVVGDENGHVGAGHGKAAEIPDAIRKAIEDAKKHLIEV------PIVGT--TIPHEAIGDFGASKVLIKPAPEGTGVIAGGAVRAVCELAGIKDIRTKSLGS 132
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_PELLD (30S ribosomal protein S5 OS=Pelodictyon luteolum (strain DSM 273) GN=rpsE PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.520e-14 Identity = 48/131 (36.64%), Postives = 71/131 (54.20%), Query Frame = 3 Query: 315 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSV--IPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGST 701 LK++++ I K + G+R F A VVVGD +GHVG G+ + EV AI + K +V +P+ +G T+P ++ K GS V M PA G G++A + VL+ AG+ DV T S GS+ Sbjct: 15 LKEKLVHINRTAKVVKGGKRFGFNAIVVVGDKEGHVGYGLGKANEVQDAIAKGVEDGKKNVVKVPIIKG----------TIPHQIVAKYGSAKVLMKPATPGTGLIAGGAVRAVLEMAGVRDVLTKSLGSS 135
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_MYCPE (30S ribosomal protein S5 OS=Mycoplasma penetrans GN=rpsE PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.520e-14 Identity = 47/140 (33.57%), Postives = 78/140 (55.71%), Query Frame = 3 Query: 315 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734 L+++++ + + K T+ G+ RF A V+GD G+VG G+ S EV AIR A+ AK ++ V K+ + T+ +V GK G+ V + PAP+G G++A K VL+ G DV++ + G +L N V+ + Sbjct: 78 LEEKIVGVKKISKTTKGGRNMRFSALAVIGDRKGNVGFGLGKSIEVPVAIRKALKSAKNNMYKV-------KMNKNFTLYHEVIGKHGAGKVLIKPAPKGTGVIAGGPIKVVLELCGFKDVYSKNLGKNTSL-NMVRATI 209
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_MYCGA (30S ribosomal protein S5 OS=Mycoplasma gallisepticum GN=rpsE PE=3 SV=2) HSP 1 Score: 79.337 bits (194), Expect = 2.520e-14 Identity = 48/141 (34.04%), Postives = 78/141 (55.32%), Query Frame = 3 Query: 312 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734 + +++++KI + K T+ G+ RF A VVVGD G VG G+ + EV AI+ A+ +A+ +V + NK G T+ V G+ G+ V + PAP G GI+A + V++ AG DV+T + G + N V+ + Sbjct: 71 EFEEKIVKISRISKTTKGGRTMRFSALVVVGDRKGRVGFGIAKALEVPNAIKKALKMAENNVQKIAM----NKHG---TLFHDVLGRSGAAKVLIKPAPSGTGIIAGGAIRAVVELAGFTDVYTKNMGKNTPI-NMVRATM 203
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_CLOBL (30S ribosomal protein S5 OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=rpsE PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.520e-14 Identity = 50/128 (39.06%), Postives = 71/128 (55.47%), Query Frame = 3 Query: 315 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGS 698 LK++V+ I V K + G+ RF VVVGD GHVG+G S E+ AIR AI AK +++ V+ +G TVP + GK G V ++ A G G++A + VL+ AG+ DV S+GS Sbjct: 10 LKEKVVHINRVAKVVKGGRNFRFSVLVVVGDEAGHVGVGTGKSIEIPEAIRKAIEDAKKNIVEVK------TVGT--TVPHDIIGKFGKGEVLIMTAKEGTGVIAGGPVRAVLELAGLKDVRAKSKGS 129
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_CLOBH (30S ribosomal protein S5 OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=rpsE PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.520e-14 Identity = 50/128 (39.06%), Postives = 71/128 (55.47%), Query Frame = 3 Query: 315 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGS 698 LK++V+ I V K + G+ RF VVVGD GHVG+G S E+ AIR AI AK +++ V+ +G TVP + GK G V ++ A G G++A + VL+ AG+ DV S+GS Sbjct: 10 LKEKVVHINRVAKVVKGGRNFRFSVLVVVGDEAGHVGVGTGKSIEIPEAIRKAIEDAKKNIVEVK------TVGT--TVPHDIIGKFGKGEVLIMTAKEGTGVIAGGPVRAVLELAGLKDVRAKSKGS 129 The following BLAST results are available for this feature:
BLAST of FC871369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 369
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Sequences
The
following sequences are available for this feature:
EST sequence >FC871369 ID=FC871369; Name=FC871369; organism=Citrus sinensis; type=EST; length=773bpback to top |