FC871369
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_METTP (30S ribosomal protein S5P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps5p PE=3 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 3.861e-39 Identity = 85/182 (46.70%), Postives = 122/182 (67.03%), Query Frame = 3 Query: 186 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 725 +W+P T+LGRLV EG++ + E+ LPIKE+QIID L+ L+DEV+ I VQ+ T +G+R +F+ V+VG+ DG++G+G +V AI+ I AKL+V+ + RG W G+ HTVP KV+G GSV + ++PAPRG G+ A V KKV++ AGI DV+T + GST+T NF K Sbjct: 9 EWIPKTRLGRLVYEGQVTTFEEAVRSGLPIKEHQIIDLLLPG-LEDEVLDITMVQRMTDSGRRVKFRTTVIVGNRDGYIGIGHGKDVQVGGAIKKGIENAKLNVVRINRGCGSWECGCGQAHTVPYKVSGSSGSVRIYLMPAPRGLGLAAGDVAKKVMEMAGIKDVWTRTEGSTRTTLNFAK 189
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_AERPE (30S ribosomal protein S5P OS=Aeropyrum pernix GN=rps5p PE=3 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 3.861e-39 Identity = 90/181 (49.72%), Postives = 123/181 (67.96%), Query Frame = 3 Query: 189 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 725 W P T++GRLV+EGKI+S+++I+ +LPI E +I+D L+ L EV+ + VQK T AG+ TRF+A VVVG+ DG+VGLG +++ AI AI AKL++IPVRRG W G H+VP V GK GSV V + PAP+G G+VA V K VL+ AGI DV+T ++G T+T NF + Sbjct: 14 WQPRTRVGRLVKEGKIKSIDEIFRRNLPILETEIVDYLLPG-LDHEVIDVSIVQKMTDAGRITRFRAVVVVGNKDGYVGLGKGKARQFRFAIEKAIRNAKLNIIPVRRGCGSWECTCGEAHSVPFTVRGKSGSVEVILKPAPKGTGLVAGDVAKVVLRLAGISDVWTFTKGETRTSYNFAR 193
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_ARCFU (30S ribosomal protein S5P OS=Archaeoglobus fulgidus GN=rps5p PE=3 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 5.043e-39 Identity = 83/181 (45.86%), Postives = 126/181 (69.61%), Query Frame = 3 Query: 189 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 725 WVP TKLGRLV +GKI+++++ +LP+KE +I+D L+ L+D+V++I VQ+ T +G+RT+F+ VVG+ +G+VG+G + +VA AI+ AI AKL++ V+RG W G H++P KVTG GSV V ++P P+G GIVA V K+V++ AG+ DV++ ++G TKT NF K Sbjct: 5 WVPKTKLGRLVADGKIKTMDEALASNLPLKEPEIVDILLPD-LEDDVLEISMVQRMTDSGRRTKFRVTAVVGNRNGYVGIGTGKASQVAPAIQKAINNAKLNIFKVQRGCGSWECGCGGDHSLPFKVTGTSGSVRVTLIPGPKGLGIVAGDVAKRVIELAGVKDVWSFTKGQTKTTVNFAK 184
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_METTH (30S ribosomal protein S5P OS=Methanobacterium thermoautotrophicum GN=rps5p PE=3 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 1.467e-38 Identity = 84/182 (46.15%), Postives = 122/182 (67.03%), Query Frame = 3 Query: 186 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 725 +W P T+LGRLV+EG I S+++I+ PI E +IID L+ L++EV+ + VQ+ ++G++ F+ V VG+ DG+VGLG ++EV AIR A+ AK ++I VRRG WG GR HTVP KV+GK GSV V ++PAP G G+ V K +++ AGIDDV++ +RG T+T NF + Sbjct: 9 EWEPRTQLGRLVKEGVITSIDEIFEEGHPIMELEIIDALLPD-LEEEVIDVNLVQRMHKSGRKVNFRVIVAVGNKDGYVGLGQGKAREVGPAIRKAVDDAKFNIIKVRRGCGDWGCVCGREHTVPFKVSGKSGSVRVTLIPAPGGVGLAIGDVGKTIMRLAGIDDVWSHTRGQTQTTVNFAR 189
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_SULTO (30S ribosomal protein S5P OS=Sulfolobus tokodaii GN=rps5p PE=3 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 1.916e-38 Identity = 85/182 (46.70%), Postives = 124/182 (68.13%), Query Frame = 3 Query: 186 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 725 +W P TK+G+LV+EGKI S+++I+ + PI E +I+D L+ KLK EVM I VQKQT AG+ +++K +V+G+ DG+V G +K++ AI+ AI AK+++IPVRRG W G H++P KV GK GSV V ++PAP+G G+V K +L +AGI D ++ +RGST T NF+K Sbjct: 12 EWKPRTKVGQLVKEGKITSMKEIFEKNYPITEPEIVDVLLP-KLKYEVMDIKIVQKQTDAGEISKYKVLIVMGNMDGYVSYGTGKAKQLRVAIQKAIKNAKMNIIPVRRGCGSWECTCGEAHSLPFKVYGKAGSVEVLLMPAPKGTGLVVGPALKTLLTYAGIKDAWSLTRGSTYTTENFIK 192
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_METS5 (30S ribosomal protein S5P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps5p PE=3 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 1.916e-38 Identity = 87/181 (48.07%), Postives = 125/181 (69.06%), Query Frame = 3 Query: 186 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFV 722 +W P TK+G+LV+EGKI S++++Y ++ I E +IID L+ + +K EV+ I VQKQT AG+ +R+K VV+G+ DG+V +GV SK++ AI+ AI AK+ VIPVRRG W G H++P V+GK GS V + PAP+G G+VA V K +L +AGI DV++ SRG T+T NF+ Sbjct: 12 EWKPRTKIGQLVKEGKITSIKELYARNMSIAEPEIIDVLLPN-MKYEVIDIGMVQKQTDAGELSRYKVLVVMGNYDGYVSIGVGKSKQLRVAIQKAIRDAKMHVIPVRRGCGSWECTCGESHSLPFLVSGKSGSAEVVLRPAPKGTGLVAGGVLKTLLTYAGIKDVWSFSRGETRTTDNFI 191
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_METBU (30S ribosomal protein S5P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps5p PE=3 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 7.282e-38 Identity = 84/182 (46.15%), Postives = 122/182 (67.03%), Query Frame = 3 Query: 186 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 725 +WVP T+LG+LV +G++ S+++ LPI+E +I+D L+ +L+DEV+ I VQ+ T +G+R +F+A V+VG+ DG VGLG +V AIR AI AK+++ ++RG W G PHTVP +V GK GSVTV + PAPRG G+ A +KVL+ AG+ DV+T + G T+T NF K Sbjct: 8 EWVPQTRLGKLVFDGQVTSMDEAMDSGLPIRESKIVDLLLP-ELEDEVLDINMVQRMTDSGRRVKFRATVIVGNGDGFVGLGQAKDVQVGPAIRKAIDNAKINITRIKRGCGSWECGCGLPHTVPSEVNGKAGSVTVVLKPAPRGLGLAAGGTARKVLEKAGVKDVWTRTEGQTRTTLNFAK 188
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_STAMF (30S ribosomal protein S5P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps5p PE=3 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 1.622e-37 Identity = 86/181 (47.51%), Postives = 121/181 (66.85%), Query Frame = 3 Query: 189 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 725 WVP T++G++V EGKI SL++I+ +LP+ E +I+D L+ LK E + + VQK T AG+R+RF+ VVVG+ DG VG+G +++ A+R A+ AKL++ PVRRG W + G PH++P V GK GSV V + PAP+G G+VA K VL+ AGI DV+T + G TKT NF K Sbjct: 14 WVPRTRVGKMVVEGKITSLKEIFDRNLPLLEPEIVDYLLPD-LKYERLDVGIVQKVTDAGRRSRFRVVVVVGNEDGFVGVGSGKARQYLVALRKALRNAKLNITPVRRGCGSWECRCGEPHSIPFTVQGKSGSVVVVLKPAPKGTGLVAGDTAKAVLRMAGIKDVWTETFGKTKTTLNFAK 193
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_THEAC (30S ribosomal protein S5P OS=Thermoplasma acidophilum GN=rps5p PE=3 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 2.767e-37 Identity = 82/180 (45.56%), Postives = 118/180 (65.56%), Query Frame = 3 Query: 186 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRR--GYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNF 719 +WVP T+LG+LV G+I+++ + LP+KEY+I+D L+ + LKDEV+ I Q+ T +G+R + VVVG+ DG+VGLG+ SKE A AIR A+I AKL+++ +RR G W GR HT+P V GK GSV + + PAPRG G+ V + +L AGI+D + + G TKT N+ Sbjct: 4 EWVPKTQLGKLVASGQIKTMGEALRSKLPLKEYEIVDYLLPN-LKDEVIDIKRAQRMTDSGRRMTYSITVVVGNGDGYVGLGIGRSKEAAPAIRKALINAKLNIMEIRRGCGSWECGCGRAHTLPFLVQGKSGSVRITLKPAPRGVGLAVGDVARTILSIAGIEDAWGFAAGHTKTTVNY 182
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_THEVO (30S ribosomal protein S5P OS=Thermoplasma volcanium GN=rps5p PE=3 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 4.720e-37 Identity = 80/180 (44.44%), Postives = 118/180 (65.56%), Query Frame = 3 Query: 186 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRR--GYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNF 719 +W P T+LG+LV G+I+++ + LP+KEY+I+D L+ + +KDEV+ I Q+ T +G+R + VVVG+ DG++GLG+ SKE A AIR A+I AKL+++ +RR G W GR HT+P V GK GSV + + PAPRG G+ V K +L+ AGI+D + + G TKT N+ Sbjct: 4 EWTPRTQLGKLVASGQIKTISEALKTKLPLKEYEIVDYLLPN-IKDEVIDIKRAQRMTDSGRRMTYSITVVVGNEDGYIGLGIGRSKEAAPAIRKALINAKLNIMEIRRGCGSWECGCGRAHTLPFLVEGKSGSVRITLKPAPRGVGLAVGNVAKIILRMAGIEDAWGFAAGHTKTTVNY 182 The following BLAST results are available for this feature:
BLAST of FC871369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 369
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Sequences
The
following sequences are available for this feature:
EST sequence >FC871369 ID=FC871369; Name=FC871369; organism=Citrus sinensis; type=EST; length=773bpback to top |