FC871369

Overview
NameFC871369
Unique NameFC871369
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_GRAFK (30S ribosomal protein S5 OS=Gramella forsetii (strain KT0803) GN=rpsE PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.633e-15
Identity = 51/134 (38.06%), Postives = 76/134 (56.72%), Query Frame = 3
Query:  306 GHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSV--IPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGST 701
            G +LKD ++ +  V K T+ G+   F A VVVGD +G VG G+  SKEVA AI  A+  AK ++  IP+ +G          T+P +  GK G   V ++PA  G GI+A    + VL+  G+ DV + ++GS+
Sbjct:   15 GLELKDRLVGVQRVTKVTKGGRAFGFSAIVVVGDENGVVGQGLGKSKEVADAISKAVEDAKKNLVRIPLHKG----------TLPHEQKGKYGGARVMLLPAAAGTGIIAGGAIRAVLESVGVHDVLSKNQGSS 138          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_GEOKA (30S ribosomal protein S5 OS=Geobacillus kaustophilus GN=rpsE PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.633e-15
Identity = 50/129 (38.76%), Postives = 74/129 (57.36%), Query Frame = 3
Query:  312 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGS 698
            +L++ V+ +  V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR AI  AK ++I V        +G   T+P +V G  G+  + + PA  G G++A    + VL+ AGI D+ + S GS
Sbjct:   10 ELEERVVAVNRVAKVVKGGRRLRFSALVVVGDKNGHVGFGTGKAQEVPEAIRKAIEDAKKNLIEV------PIVGT--TIPHEVIGHFGAGEIILKPASEGTGVIAGGPARAVLELAGISDILSKSIGS 130          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_BACSU (30S ribosomal protein S5 OS=Bacillus subtilis GN=rpsE PE=1 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 6.633e-15
Identity = 48/141 (34.04%), Postives = 80/141 (56.74%), Query Frame = 3
Query:  312 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734
            +L++ ++ +  V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR A+  AK ++I V        +G   T+P ++ G+ G+  + + PA  G G++A    + VL+ AG+ D+ + S GS   + N ++  L
Sbjct:   10 ELEERLVTVNRVAKVVKGGRRFRFAALVVVGDKNGHVGFGTGKAQEVPEAIRKAVEDAKKNLIEV------PMVGT--TIPHEIIGRFGAGNILLKPASEGTGVIAGGPVRAVLELAGVADILSKSLGSNTPI-NMIRATL 141          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_BACST (30S ribosomal protein S5 OS=Bacillus stearothermophilus GN=rpsE PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.633e-15
Identity = 50/129 (38.76%), Postives = 74/129 (57.36%), Query Frame = 3
Query:  312 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGS 698
            +L++ V+ +  V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR AI  AK ++I V        +G   T+P +V G  G+  + + PA  G G++A    + VL+ AGI D+ + S GS
Sbjct:   10 ELEERVVAVNRVAKVVKGGRRLRFSALVVVGDKNGHVGFGTGKAQEVPEAIRKAIEDAKKNLIEV------PIVGT--TIPHEVIGHFGAGEIILKPASEGTGVIAGGPARAVLELAGISDILSKSIGS 130          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_BACP2 (30S ribosomal protein S5 OS=Bacillus pumilus (strain SAFR-032) GN=rpsE PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.633e-15
Identity = 49/141 (34.75%), Postives = 80/141 (56.74%), Query Frame = 3
Query:  312 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734
            +L++ ++ +  V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR A+  AK ++I V        +G   T+P ++ G+ G+  V + PA  G G++A    + VL+ AG+ D+ + S GS   + N ++  L
Sbjct:   10 ELEERLVTVNRVAKVVKGGRRFRFAALVVVGDKNGHVGFGTGKAQEVPEAIRKAVEDAKKNLIEV------PMVGT--TIPHEIIGRFGAGNVLLKPASEGTGVIAGGPVRAVLELAGLADILSKSLGSNTPI-NMIRATL 141          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_BACA2 (30S ribosomal protein S5 OS=Bacillus amyloliquefaciens (strain FZB42) GN=rpsE PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.633e-15
Identity = 48/141 (34.04%), Postives = 80/141 (56.74%), Query Frame = 3
Query:  312 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734
            +L++ ++ +  V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR A+  AK ++I V        +G   T+P ++ G+ G+  + + PA  G G++A    + VL+ AG+ D+ + S GS   + N ++  L
Sbjct:   12 ELEERLVTVNRVAKVVKGGRRFRFAALVVVGDKNGHVGFGTGKAQEVPEAIRKAVEDAKKNLIEV------PMVGT--TIPHEIIGRFGAGNILLKPASEGTGVIAGGPVRAVLELAGVADILSKSLGSNTPI-NMIRATL 143          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_ANOFW (30S ribosomal protein S5 OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.633e-15
Identity = 52/141 (36.88%), Postives = 79/141 (56.03%), Query Frame = 3
Query:  312 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734
            +L++ V+ +  V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR AI  AK ++I V        +G   T+P +V G  G+  + + PA  G G++A    + VL+ AGI D+ + S GS   + N V+  +
Sbjct:   10 ELEERVVAVNRVAKVVKGGRRFRFAALVVVGDKNGHVGFGTGKAQEVPDAIRKAIEDAKKNLITV------PIVGT--TIPHEVIGHFGAGEIILKPASEGTGVIAGGPARAVLELAGISDILSKSIGSNTPI-NMVRATI 141          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_STAHJ (30S ribosomal protein S5 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.663e-15
Identity = 51/141 (36.17%), Postives = 76/141 (53.90%), Query Frame = 3
Query:  312 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734
            + ++ V+ I  V K  + G+R RF A VVVGD +G VG G   ++EV  AI+ A+  AK  ++ V R           T P  +TG+ GS +V M PA  G G++A    + VL+ AGI D+ + S GS   + N V+  +
Sbjct:   10 EFEERVVTINRVAKVVKGGRRFRFTALVVVGDKNGRVGFGTGKAQEVPEAIKKAVEAAKKDLVVVPR--------VEGTTPHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPI-NMVRATI 141          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_STAAW (30S ribosomal protein S5 OS=Staphylococcus aureus (strain MW2) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.663e-15
Identity = 51/141 (36.17%), Postives = 76/141 (53.90%), Query Frame = 3
Query:  312 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734
            + ++ V+ I  V K  + G+R RF A VVVGD +G VG G   ++EV  AI+ A+  AK  ++ V R           T P  +TG+ GS +V M PA  G G++A    + VL+ AGI D+ + S GS   + N V+  +
Sbjct:   10 EFEERVVTINRVAKVVKGGRRFRFTALVVVGDKNGRVGFGTGKAQEVPEAIKKAVEAAKKDLVVVPR--------VEGTTPHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPI-NMVRATI 141          
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS5_STAAT (30S ribosomal protein S5 OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.663e-15
Identity = 51/141 (36.17%), Postives = 76/141 (53.90%), Query Frame = 3
Query:  312 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL 734
            + ++ V+ I  V K  + G+R RF A VVVGD +G VG G   ++EV  AI+ A+  AK  ++ V R           T P  +TG+ GS +V M PA  G G++A    + VL+ AGI D+ + S GS   + N V+  +
Sbjct:   10 EFEERVVTINRVAKVVKGGRRFRFTALVVVGDKNGRVGFGTGKAQEVPEAIKKAVEAAKKDLVVVPR--------VEGTTPHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPI-NMVRATI 141          
The following BLAST results are available for this feature:
BLAST of FC871369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 369
Match NameE-valueIdentityDescription
RS5_GRAFK6.633e-1538.0630S ribosomal protein S5 OS=Gramella forsetii (str... [more]
RS5_GEOKA6.633e-1538.7630S ribosomal protein S5 OS=Geobacillus kaustophil... [more]
RS5_BACSU6.633e-1534.0430S ribosomal protein S5 OS=Bacillus subtilis GN=r... [more]
RS5_BACST6.633e-1538.7630S ribosomal protein S5 OS=Bacillus stearothermop... [more]
RS5_BACP26.633e-1534.7530S ribosomal protein S5 OS=Bacillus pumilus (stra... [more]
RS5_BACA26.633e-1534.0430S ribosomal protein S5 OS=Bacillus amyloliquefac... [more]
RS5_ANOFW6.633e-1536.8830S ribosomal protein S5 OS=Anoxybacillus flavithe... [more]
RS5_STAHJ8.663e-1536.1730S ribosomal protein S5 OS=Staphylococcus haemoly... [more]
RS5_STAAW8.663e-1536.1730S ribosomal protein S5 OS=Staphylococcus aureus ... [more]
RS5_STAAT8.663e-1536.1730S ribosomal protein S5 OS=Staphylococcus aureus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAK2CD03FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2CD03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871369 ID=FC871369; Name=FC871369; organism=Citrus sinensis; type=EST; length=773bp
CCTCGCATTTTTCTTTCTCCCAAAGCCCAAACCCTAGCTTCAATCCCTAA
ACACACAAGAACAAAACCATGGCTGAACGAGGTGGCGAGCGCGGTGCATT
CGGACGCGGCTTCGGCCGTGGTGGACGGGGCGACCGTGGAGGCCCACGTG
GCCGTCGCCGCGCTGGACGCAGAGAGGAAGAAGAGAAGTGGGTCCCAGTC
ACGAAACTCGGCCGTCTGGTGAGAGAAGGCAAGATCAGGAGCCTCGAGCA
AATCTACCTCCACTCGCTCCCAATCAAGGAGTATCAAATCATCGACACGC
TTATCGGCCACAAATTGAAGGACGAGGTCATGAAGATCATGCCGGTGCAG
AAACAGACACGTGCCGGTCAGAGGACGAGGTTCAAGGCCTTCGTCGTCGT
CGGTGACACGGACGGCCACGTGGGTCTTGGCGTTAAGTGCTCCAAAGAGG
TTGCCACTGCCATCCGTGGCGCTATCATATTGGCGAAGCTGTCAGTGATT
CCGGTGAGAAGGGGTTACTGGGGTAACAAGATCGGGAGGCCACACACCGT
GCCGTGTAAGGTGACCGGTAAGTGTGGCAGTGTCACCGTGAGGATGGTTC
CGGCCCCACGTGGTGCCGGAATTGTGGCGGCTAGGGTTCCAAAGAAGGTG
CTGCAGTTTGCTGGTATTGACGATGTTTTCACATCTTCTCGTGGGTCGAC
CAAGACTCTTGGAAACTTTGTCAAGGGCAACCTTTGAGTGGTTGTTGAAG
ACATATGGCTTCCTTACCCCTGA
back to top