EY715966

Overview
NameEY715966
Unique NameEY715966
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length948
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY715966_ssr767 microsatellite EY715966_ssr767:767..778. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY715966 vs. ExPASy Swiss-Prot
Match: UBE2S_XENTR (Ubiquitin-conjugating enzyme E2 S OS=Xenopus tropicalis GN=ube2s PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.182e-11
Identity = 30/88 (34.09%), Postives = 50/88 (56.82%), Query Frame = 1
Query:   73 KRLMRDFKRLRRDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTGRFVIRMFHPYIYADGSICLGYIAK 336
            +++ ++   L  DPP GI   P + +I      I GP+ TP+ GG F++ L   +D+P  PP G F+ ++FHP +  +G IC+  + K
Sbjct:   14 RQVYKEVSTLTSDPPEGIKIIPNEEDITDVQVNIEGPEGTPYAGGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSTNGEICVNVLKK 101          
BLAST of EY715966 vs. ExPASy Swiss-Prot
Match: UBC11_SCHPO (Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosaccharomyces pombe GN=ubc11 PE=2 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 6.505e-11
Identity = 33/84 (39.29%), Postives = 46/84 (54.76%), Query Frame = 1
Query:   73 KRLMRDFKRLRRDPPAGISGAPQ-DNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTGRFVIRMFHPYIYADGSICL 321
            KRL  +   L      GIS  P  D+N++ W   I GP DT ++G  FK+++ F  +YP  PPT  F   M+HP +   G+ICL
Sbjct:   31 KRLRSELMSLMMSNTPGISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPYSPPTIIFTSPMWHPNVDMSGNICL 114          

HSP 2 Score: 23.483 bits (49), Expect = 6.505e-11
Identity = 11/25 (44.00%), Postives = 18/25 (72.00%), Query Frame = 2
Query:  323 DILQNQWSPIFDVVAI-LDLYSVAG 394
            DIL+++WS +++V  I L L S+ G
Sbjct:  115 DILKDKWSAVYNVQTILLSLQSLLG 139          
BLAST of EY715966 vs. ExPASy Swiss-Prot
Match: UBE2S_HUMAN (Ubiquitin-conjugating enzyme E2 S OS=Homo sapiens GN=UBE2S PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 8.074e-11
Identity = 29/84 (34.52%), Postives = 48/84 (57.14%), Query Frame = 1
Query:   85 RDFKRLRRDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTGRFVIRMFHPYIYADGSICLGYIAK 336
            ++   L  DPP GI   P + ++      I GP+ TP+ GG F++ L   +D+P  PP G F+ ++FHP + A+G IC+  + +
Sbjct:   18 KEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKR 101          
BLAST of EY715966 vs. ExPASy Swiss-Prot
Match: UBE2S_BOVIN (Ubiquitin-conjugating enzyme E2 S OS=Bos taurus GN=UBE2S PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.074e-11
Identity = 29/84 (34.52%), Postives = 48/84 (57.14%), Query Frame = 1
Query:   85 RDFKRLRRDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTGRFVIRMFHPYIYADGSICLGYIAK 336
            ++   L  DPP GI   P + ++      I GP+ TP+ GG F++ L   +D+P  PP G F+ ++FHP + A+G IC+  + +
Sbjct:   18 KEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKR 101          
BLAST of EY715966 vs. ExPASy Swiss-Prot
Match: UBC_ASFWA (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Warthog/Namibia/Wart80/1980) GN=UBC PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.074e-11
Identity = 28/84 (33.33%), Postives = 47/84 (55.95%), Query Frame = 1
Query:   79 LMRDFKRLRRDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTGRFVIRMFHPYIYADGSICLGYI 330
            LM +++ L  +P      +  +N++  W+ ++ GP DT ++GG FK  + F  +YP  PP   F   M+HP IY DG +C+  +
Sbjct:    6 LMAEYRHLIENPSENFKISVNENDMTEWDVILRGPPDTLYEGGLFKAKVAFPPEYPYAPPRLTFTSEMWHPNIYPDGKLCISIL 89          
BLAST of EY715966 vs. ExPASy Swiss-Prot
Match: UBCX_DICDI (Ubiquitin-conjugating enzyme E2 pex4 OS=Dictyostelium discoideum GN=pex4 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.074e-11
Identity = 35/90 (38.89%), Postives = 56/90 (62.22%), Query Frame = 1
Query:   76 RLMRDFKRLRRDPPAGISGAPQD-NNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTGRFVIRMFHPYI-YADGSICLGYIAKS 339
            RLM+++K L+ +    I   P+D +++  W A+I GP DTP++ G F+L +    +YP +PPT +FV ++FHP I +  G ICL  +  S
Sbjct:    4 RLMKEYKVLQNEEFEDILLYPRDESDLYRWVAIIKGPPDTPYENGKFELDISVPTNYPLQPPTIKFVTKIFHPNIHFKTGEICLDLLKTS 93          
BLAST of EY715966 vs. ExPASy Swiss-Prot
Match: UBC6_ASHGO (Ubiquitin-conjugating enzyme E2 6 OS=Ashbya gossypii GN=UBC6 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.074e-11
Identity = 33/78 (42.31%), Postives = 48/78 (61.54%), Query Frame = 1
Query:   58 STPAKKRLMRDFKRLRRDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTGRFVIRMFHP 291
            S  A KRL +++K +  +PP  I  AP+++NI++W+ VI GP +TP++ G +  TL F  DYP  PP     IRM  P
Sbjct:    3 SRQAYKRLSKEYKMMTENPPPYIVAAPKEDNILVWHYVITGPPETPYEDGQYHGTLVFPNDYPFNPP----AIRMLTP 76          
The following BLAST results are available for this feature:
BLAST of EY715966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
UBE2S_XENTR6.182e-1134.09Ubiquitin-conjugating enzyme E2 S OS=Xenopus tropi... [more]
UBC11_SCHPO6.505e-1139.29Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosa... [more]
UBE2S_HUMAN8.074e-1134.52Ubiquitin-conjugating enzyme E2 S OS=Homo sapiens ... [more]
UBE2S_BOVIN8.074e-1134.52Ubiquitin-conjugating enzyme E2 S OS=Bos taurus GN... [more]
UBC_ASFWA8.074e-1133.33Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBCX_DICDI8.074e-1138.89Ubiquitin-conjugating enzyme E2 pex4 OS=Dictyostel... [more]
UBC6_ASHGO8.074e-1142.31Ubiquitin-conjugating enzyme E2 6 OS=Ashbya gossyp... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-060-H01-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY715966 ID=EY715966; Name=EY715966; organism=Citrus sinensis; type=EST; length=948bp
CTTTTCTCTAGAACTTTCCTCTCTCGTTCTCTCTCTGTAGAACACGACGT
CGCCATGTCAACACCGGCGAAGAAGCGGCTGATGCGGGACTTCAAGCGCC
TCCGGCGAGATCCACCCGCCGGCATCAGCGGTGCCCCTCAAGACAACAAC
ATCATGTTGTGGAACGCCGTTATTTTTGGGCCCGATGATACTCCCTGGGA
CGGAGGTACGTTCAAGTTGACTCTACAATTCACAGAGGATTATCCAAATA
AACCCCCAACAGGTCGTTTCGTCATCCGGATGTTTCATCCCTATATCTAT
GCAGATGGAAGTATTTGTTTGGGATATATTGCAAAATCAGTGGAGTCCTA
TATTTGATGTTGTAGCTATACTGGACCTGTATTCGGTCGCTGGTGTGGGA
TCCGGGTGAGATTTTTCCTGCTCACTCCGAAGACGACTCGGGTGTTGCTT
GATGCTAAGCGAAATAATAGACCAAAGAGTCGGGAAATTCTGGAACAAAA
ATAGATAAGCGGAGTATAAGGCAGAGACAGAAGGGGGGGTGCGCCGCGCA
GAGTAATGAGGAAATGGTCGGGGGGAGACTTTGTGTTACTTCAACGGGCG
GCCCTCACAACGGCCCGAGAGAGGGGGGGTGGGGAATTATGTTCGGTAGG
TGTGGGGGGTTCGGAGGGGGAGGGGCGCGGGGGGTCGCGAGACGCGGGAG
AAAACGAGAACAGGGGGGGAGGGGAGGAAGACGGGATAGAACATAGCGGG
GGGGGAAGTATAGGCCGGGAGGGAGGGAAGGATAAAGGGGAGGTGGGAGG
GGGAAGGGAGGATAGAAGAGGGGGAAGCGGAGAAGGAGAAGAAGGAGGAG
GGGAGGGGAGANAGGGGGGAGGGGATGAGTGGGACGGAGGGATGGAGGAG
GGAGGAGAGAGGGAGAGAGAGGGTGATGGAAGGAAAGCGAGGTGCCTG
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