EY715966 | Citrus Genome Database

Overview


Name	EY715966
Unique Name	EY715966
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	948

Libraries


Library Name	Type
Sweet orange fruit, development stadium (3 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
EY715966_ssr767	microsatellite	EY715966_ssr767:767..778.	BLAST: Citrus ESTs to Prunus persica proteins V1

Homology

[Close]

BLAST of EY715966 vs. ExPASy Swiss-Prot
Match: UB2D2_HUMAN (Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens GN=UBE2D2 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 7.578e-18
Identity = 40/85 (47.06%), Postives = 54/85 (63.53%), Query Frame = 1

Query:   67 AKKRLMRDFKRLRRDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTGRFVIRMFHPYIYADGSICL 321
            A KR+ ++   L RDPPA  S  P  +++  W A I GP+D+P+ GG F LT+ F  DYP KPP   F  R++HP I ++GSICL
Sbjct:    2 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICL 86

HSP 2 Score: 23.0978 bits (48), Expect = 7.578e-18
Identity = 8/17 (47.06%), Postives = 12/17 (70.59%), Query Frame = 2

Query:  323 DILQNQWSPIFDVVAIL 373
            DIL++QWSP   +  +L
Sbjct:   87 DILRSQWSPALTISKVL 103

[Close]

BLAST of EY715966 vs. ExPASy Swiss-Prot
Match: UB2D2_BOVIN (Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 7.578e-18
Identity = 40/85 (47.06%), Postives = 54/85 (63.53%), Query Frame = 1

Query:   67 AKKRLMRDFKRLRRDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTGRFVIRMFHPYIYADGSICL 321
            A KR+ ++   L RDPPA  S  P  +++  W A I GP+D+P+ GG F LT+ F  DYP KPP   F  R++HP I ++GSICL
Sbjct:    2 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICL 86

HSP 2 Score: 23.0978 bits (48), Expect = 7.578e-18
Identity = 8/17 (47.06%), Postives = 12/17 (70.59%), Query Frame = 2

Query:  323 DILQNQWSPIFDVVAIL 373
            DIL++QWSP   +  +L
Sbjct:   87 DILRSQWSPALTISKVL 103

[Close]

BLAST of EY715966 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 9.855e-18
Identity = 38/85 (44.71%), Postives = 54/85 (63.53%), Query Frame = 1

Query:   67 AKKRLMRDFKRLRRDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTGRFVIRMFHPYIYADGSICL 321
            A KR++++ K L++DPP   S  P   ++  W A I GP D+P+ GG F +T+ F  DYP KPP   F  ++FHP I ++GSICL
Sbjct:    2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL 86

HSP 2 Score: 22.7126 bits (47), Expect = 9.855e-18
Identity = 8/17 (47.06%), Postives = 11/17 (64.71%), Query Frame = 2

Query:  323 DILQNQWSPIFDVVAIL 373
            DIL+ QWSP   +  +L
Sbjct:   87 DILKEQWSPALTISKVL 103

[Close]

BLAST of EY715966 vs. ExPASy Swiss-Prot
Match: UBCD1_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=eff PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 9.855e-18
Identity = 40/85 (47.06%), Postives = 54/85 (63.53%), Query Frame = 1

Query:   67 AKKRLMRDFKRLRRDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTGRFVIRMFHPYIYADGSICL 321
            A KR+ ++ + L RDPPA  S  P  +++  W A I GP D+P+ GG F LT+ F  DYP KPP   F  R++HP I ++GSICL
Sbjct:    2 ALKRINKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICL 86

HSP 2 Score: 23.0978 bits (48), Expect = 9.855e-18
Identity = 8/17 (47.06%), Postives = 12/17 (70.59%), Query Frame = 2

Query:  323 DILQNQWSPIFDVVAIL 373
            DIL++QWSP   +  +L
Sbjct:   87 DILRSQWSPALTISKVL 103

[Close]

BLAST of EY715966 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.281e-17
Identity = 37/85 (43.53%), Postives = 54/85 (63.53%), Query Frame = 1

Query:   67 AKKRLMRDFKRLRRDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTGRFVIRMFHPYIYADGSICL 321
            A KR++++ K L++DPP   S  P   ++  W A I GP D+P+ GG F +T+ F  DYP KPP   F  ++FHP + ++GSICL
Sbjct:    2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNVNSNGSICL 86

HSP 2 Score: 22.7126 bits (47), Expect = 1.281e-17
Identity = 8/17 (47.06%), Postives = 11/17 (64.71%), Query Frame = 2

Query:  323 DILQNQWSPIFDVVAIL 373
            DIL+ QWSP   +  +L
Sbjct:   87 DILKEQWSPALTISKVL 103

[Close]

BLAST of EY715966 vs. ExPASy Swiss-Prot
Match: UBC2_CAEEL (Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.666e-17
Identity = 39/85 (45.88%), Postives = 54/85 (63.53%), Query Frame = 1

Query:   67 AKKRLMRDFKRLRRDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTGRFVIRMFHPYIYADGSICL 321
            A KR+ ++ + L RDPPA  S  P  +++  W A I GP ++P+ GG F LT+ F  DYP KPP   F  R++HP I ++GSICL
Sbjct:    2 ALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICL 86

HSP 2 Score: 23.0978 bits (48), Expect = 1.666e-17
Identity = 8/17 (47.06%), Postives = 12/17 (70.59%), Query Frame = 2

Query:  323 DILQNQWSPIFDVVAIL 373
            DIL++QWSP   +  +L
Sbjct:   87 DILRSQWSPALTISKVL 103

[Close]

BLAST of EY715966 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.763e-17
Identity = 37/85 (43.53%), Postives = 54/85 (63.53%), Query Frame = 1

Query:   67 AKKRLMRDFKRLRRDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTGRFVIRMFHPYIYADGSICL 321
            A KR++++ K L++DPP   S  P   ++  W A I GP ++P+ GG F +T+ F  DYP KPP   F  ++FHP I ++GSICL
Sbjct:    2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL 86

HSP 2 Score: 22.7126 bits (47), Expect = 4.763e-17
Identity = 8/17 (47.06%), Postives = 11/17 (64.71%), Query Frame = 2

Query:  323 DILQNQWSPIFDVVAIL 373
            DIL+ QWSP   +  +L
Sbjct:   87 DILKEQWSPALTISKVL 103

[Close]

BLAST of EY715966 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.763e-17
Identity = 37/85 (43.53%), Postives = 54/85 (63.53%), Query Frame = 1

Query:   67 AKKRLMRDFKRLRRDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTGRFVIRMFHPYIYADGSICL 321
            A KR++++ K L++DPP   S  P   ++  W A I GP ++P+ GG F +T+ F  DYP KPP   F  ++FHP I ++GSICL
Sbjct:    2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL 86

HSP 2 Score: 22.7126 bits (47), Expect = 4.763e-17
Identity = 8/17 (47.06%), Postives = 11/17 (64.71%), Query Frame = 2

Query:  323 DILQNQWSPIFDVVAIL 373
            DIL+ QWSP   +  +L
Sbjct:   87 DILKEQWSPALTISKVL 103

[Close]

BLAST of EY715966 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 6.193e-17
Identity = 37/85 (43.53%), Postives = 54/85 (63.53%), Query Frame = 1

Query:   67 AKKRLMRDFKRLRRDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTGRFVIRMFHPYIYADGSICL 321
            A KR++++ K L++DPP   S  P   ++  W A I GP D+P+ GG F +++ F  DYP KPP   F  ++FHP I ++GSICL
Sbjct:    2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPTDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL 86

HSP 2 Score: 22.7126 bits (47), Expect = 6.193e-17
Identity = 8/17 (47.06%), Postives = 11/17 (64.71%), Query Frame = 2

Query:  323 DILQNQWSPIFDVVAIL 373
            DIL+ QWSP   +  +L
Sbjct:   87 DILKEQWSPALTISKVL 103

[Close]

BLAST of EY715966 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.193e-17
Identity = 37/85 (43.53%), Postives = 54/85 (63.53%), Query Frame = 1

Query:   67 AKKRLMRDFKRLRRDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTGRFVIRMFHPYIYADGSICL 321
            A KR+ ++ + L+RDPP   S  P  +++  W A I GP D+P+ GG F +T+ F  DYP KPP   F  +++HP I ++GSICL
Sbjct:    2 ASKRINKELRDLQRDPPVSCSAGPTGDDMFQWQATIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVAFRTKVYHPNINSNGSICL 86

HSP 2 Score: 23.0978 bits (48), Expect = 6.193e-17
Identity = 9/17 (52.94%), Postives = 11/17 (64.71%), Query Frame = 2

Query:  323 DILQNQWSPIFDVVAIL 373
            DIL+ QWSP   V  +L
Sbjct:   87 DILKEQWSPALTVSKVL 103

The following BLAST results are available for this feature:

BLAST of EY715966 vs. ExPASy Swiss-Prot

BLAST of EY715966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147


Match Name	E-value	Identity	Description
UB2D2_HUMAN	7.578e-18	47.06	Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens...	[more]
UB2D2_BOVIN	7.578e-18	47.06	Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus G...	[more]
UBC9_ARATH	9.855e-18	44.71	SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia...	[more]
UBCD1_DROME	9.855e-18	47.06	Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi...	[more]
UBC28_ARATH	1.281e-17	43.53	Ubiquitin carrier protein E2 28 OS=Arabidopsis tha...	[more]
UBC2_CAEEL	1.666e-17	45.88	Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditi...	[more]
UBC8_ARATH	4.763e-17	43.53	Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t...	[more]
UBC10_ARATH	4.763e-17	43.53	Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ...	[more]
UBC4_SOLLC	6.193e-17	43.53	Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ...	[more]
UBC30_ARATH	6.193e-17	43.53	Ubiquitin carrier protein E2 30 OS=Arabidopsis tha...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-702-060-H01-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY715966 ID=EY715966; Name=EY715966; organism=Citrus sinensis; type=EST; length=948bp
CTTTTCTCTAGAACTTTCCTCTCTCGTTCTCTCTCTGTAGAACACGACGT
CGCCATGTCAACACCGGCGAAGAAGCGGCTGATGCGGGACTTCAAGCGCC
TCCGGCGAGATCCACCCGCCGGCATCAGCGGTGCCCCTCAAGACAACAAC
ATCATGTTGTGGAACGCCGTTATTTTTGGGCCCGATGATACTCCCTGGGA
CGGAGGTACGTTCAAGTTGACTCTACAATTCACAGAGGATTATCCAAATA
AACCCCCAACAGGTCGTTTCGTCATCCGGATGTTTCATCCCTATATCTAT
GCAGATGGAAGTATTTGTTTGGGATATATTGCAAAATCAGTGGAGTCCTA
TATTTGATGTTGTAGCTATACTGGACCTGTATTCGGTCGCTGGTGTGGGA
TCCGGGTGAGATTTTTCCTGCTCACTCCGAAGACGACTCGGGTGTTGCTT
GATGCTAAGCGAAATAATAGACCAAAGAGTCGGGAAATTCTGGAACAAAA
ATAGATAAGCGGAGTATAAGGCAGAGACAGAAGGGGGGGTGCGCCGCGCA
GAGTAATGAGGAAATGGTCGGGGGGAGACTTTGTGTTACTTCAACGGGCG
GCCCTCACAACGGCCCGAGAGAGGGGGGGTGGGGAATTATGTTCGGTAGG
TGTGGGGGGTTCGGAGGGGGAGGGGCGCGGGGGGTCGCGAGACGCGGGAG
AAAACGAGAACAGGGGGGGAGGGGAGGAAGACGGGATAGAACATAGCGGG
GGGGGAAGTATAGGCCGGGAGGGAGGGAAGGATAAAGGGGAGGTGGGAGG
GGGAAGGGAGGATAGAAGAGGGGGAAGCGGAGAAGGAGAAGAAGGAGGAG
GGGAGGGGAGANAGGGGGGAGGGGATGAGTGGGACGGAGGGATGGAGGAG
GGAGGAGAGAGGGAGAGAGAGGGTGATGGAAGGAAAGCGAGGTGCCTG