EY715966

Overview
NameEY715966
Unique NameEY715966
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length948
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY715966_ssr767 microsatellite EY715966_ssr767:767..778. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY715966 vs. ExPASy Swiss-Prot
Match: UBC9_DICDI (Sumo-conjugating enzyme ubc9 OS=Dictyostelium discoideum GN=ubc9 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 7.057e-15
Identity = 39/102 (38.24%), Postives = 55/102 (53.92%), Query Frame = 1
Query:   55 MSTPAKKRLMRDFKRLRRDPPAGISGAPQDN-----NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTGRFVIRMFHPYIYADGSICLGYIAKSVE 345
            M+  +  RL  + K  RRD P G    P  N     N+ +WN  I G   T W+GG + L ++FTEDYP+KPP  RF    FHP +Y  G++CL  + +  +
Sbjct:    1 MAGISSARLSEERKNWRRDHPYGFFARPSTNTDGSLNLYVWNCGIPGKTKTNWEGGVYPLIMEFTEDYPSKPPKCRFPKDFFHPNVYPSGTVCLSILNEEAD 102          
BLAST of EY715966 vs. ExPASy Swiss-Prot
Match: UBC4_CANAL (Ubiquitin-conjugating enzyme E2 4 OS=Candida albicans GN=UBC4 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 9.043e-15
Identity = 34/83 (40.96%), Postives = 51/83 (61.45%), Query Frame = 1
Query:   73 KRLMRDFKRLRRDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTGRFVIRMFHPYIYADGSICL 321
            KR+ ++   L RDPP+  S  P  +++  W A I GP D+P+ GG F L++ F  DYP KPP      +++HP I ++G+ICL
Sbjct:    4 KRINKELSDLGRDPPSSCSAGPVGDDLYHWQASIMGPPDSPYAGGVFFLSIHFPTDYPLKPPKIALTTKIYHPNINSNGNICL 86          

HSP 2 Score: 23.0978 bits (48), Expect = 9.043e-15
Identity = 8/17 (47.06%), Postives = 12/17 (70.59%), Query Frame = 2
Query:  323 DILQNQWSPIFDVVAIL 373
            DIL++QWSP   +  +L
Sbjct:   87 DILKDQWSPALTISKVL 103          
BLAST of EY715966 vs. ExPASy Swiss-Prot
Match: UBC9A_DANRE (SUMO-conjugating enzyme UBC9-A OS=Danio rerio GN=ube2ia PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 9.217e-15
Identity = 39/97 (40.21%), Postives = 53/97 (54.64%), Query Frame = 1
Query:   55 MSTPAKKRLMRDFKRLRRDPPAGISGAPQDN-----NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTGRFVIRMFHPYIYADGSICLGYI 330
            MS  A  RL ++ K  R+D P G    P  N     N+M W   I G   TPW+GG FKL + F +DYP+ PP  +F   +FHP +Y  G++CL  +
Sbjct:    1 MSGIALSRLAQERKAWRKDHPFGFVAVPMKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSIL 97          
BLAST of EY715966 vs. ExPASy Swiss-Prot
Match: UBE2N_DROME (Ubiquitin-conjugating enzyme E2 N OS=Drosophila melanogaster GN=ben PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.173e-14
Identity = 33/83 (39.76%), Postives = 55/83 (66.27%), Query Frame = 1
Query:   73 KRLMRDFKRLRRDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTGRFVIRMFHPYIYADGSICL 321
            +R++++ +RL ++P  GI+  P +NN   ++ ++ GP+D+P++GG FKL L   EDYP   P  RF+ +++HP I   G ICL
Sbjct:    6 RRIIKETQRLMQEPVPGINAIPDENNARYFHVIVTGPNDSPFEGGVFKLELFLPEDYPMSAPKVRFITKIYHPNIDRLGRICL 88          

HSP 2 Score: 21.9422 bits (45), Expect = 1.173e-14
Identity = 7/17 (41.18%), Postives = 12/17 (70.59%), Query Frame = 2
Query:  323 DILQNQWSPIFDVVAIL 373
            D+L+++WSP   +  IL
Sbjct:   89 DVLKDKWSPALQIRTIL 105          
BLAST of EY715966 vs. ExPASy Swiss-Prot
Match: UBC9_XENTR (SUMO-conjugating enzyme UBC9 OS=Xenopus tropicalis GN=ube2i PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.204e-14
Identity = 39/97 (40.21%), Postives = 53/97 (54.64%), Query Frame = 1
Query:   55 MSTPAKKRLMRDFKRLRRDPPAGISGAPQDN-----NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTGRFVIRMFHPYIYADGSICLGYI 330
            MS  A  RL ++ K  R+D P G    P  N     N+M W   I G   TPW+GG FKL + F +DYP+ PP  +F   +FHP +Y  G++CL  +
Sbjct:    1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSIL 97          
BLAST of EY715966 vs. ExPASy Swiss-Prot
Match: UBC9_XENLA (SUMO-conjugating enzyme UBC9 OS=Xenopus laevis GN=ube2i PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.204e-14
Identity = 39/97 (40.21%), Postives = 53/97 (54.64%), Query Frame = 1
Query:   55 MSTPAKKRLMRDFKRLRRDPPAGISGAPQDN-----NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTGRFVIRMFHPYIYADGSICLGYI 330
            MS  A  RL ++ K  R+D P G    P  N     N+M W   I G   TPW+GG FKL + F +DYP+ PP  +F   +FHP +Y  G++CL  +
Sbjct:    1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSIL 97          
BLAST of EY715966 vs. ExPASy Swiss-Prot
Match: UBC9_SPETR (SUMO-conjugating enzyme UBC9 OS=Spermophilus tridecemlineatus GN=UBE2I PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.204e-14
Identity = 39/97 (40.21%), Postives = 53/97 (54.64%), Query Frame = 1
Query:   55 MSTPAKKRLMRDFKRLRRDPPAGISGAPQDN-----NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTGRFVIRMFHPYIYADGSICLGYI 330
            MS  A  RL ++ K  R+D P G    P  N     N+M W   I G   TPW+GG FKL + F +DYP+ PP  +F   +FHP +Y  G++CL  +
Sbjct:    1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSIL 97          
BLAST of EY715966 vs. ExPASy Swiss-Prot
Match: UBC9_RAT (SUMO-conjugating enzyme UBC9 OS=Rattus norvegicus GN=Ube2i PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.204e-14
Identity = 39/97 (40.21%), Postives = 53/97 (54.64%), Query Frame = 1
Query:   55 MSTPAKKRLMRDFKRLRRDPPAGISGAPQDN-----NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTGRFVIRMFHPYIYADGSICLGYI 330
            MS  A  RL ++ K  R+D P G    P  N     N+M W   I G   TPW+GG FKL + F +DYP+ PP  +F   +FHP +Y  G++CL  +
Sbjct:    1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSIL 97          
BLAST of EY715966 vs. ExPASy Swiss-Prot
Match: UBC9_MOUSE (SUMO-conjugating enzyme UBC9 OS=Mus musculus GN=Ube2i PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.204e-14
Identity = 39/97 (40.21%), Postives = 53/97 (54.64%), Query Frame = 1
Query:   55 MSTPAKKRLMRDFKRLRRDPPAGISGAPQDN-----NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTGRFVIRMFHPYIYADGSICLGYI 330
            MS  A  RL ++ K  R+D P G    P  N     N+M W   I G   TPW+GG FKL + F +DYP+ PP  +F   +FHP +Y  G++CL  +
Sbjct:    1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSIL 97          
BLAST of EY715966 vs. ExPASy Swiss-Prot
Match: UBC9_MESAU (SUMO-conjugating enzyme UBC9 OS=Mesocricetus auratus GN=UBE2I PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.204e-14
Identity = 39/97 (40.21%), Postives = 53/97 (54.64%), Query Frame = 1
Query:   55 MSTPAKKRLMRDFKRLRRDPPAGISGAPQDN-----NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTGRFVIRMFHPYIYADGSICLGYI 330
            MS  A  RL ++ K  R+D P G    P  N     N+M W   I G   TPW+GG FKL + F +DYP+ PP  +F   +FHP +Y  G++CL  +
Sbjct:    1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSIL 97          
The following BLAST results are available for this feature:
BLAST of EY715966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
UBC9_DICDI7.057e-1538.24Sumo-conjugating enzyme ubc9 OS=Dictyostelium disc... [more]
UBC4_CANAL9.043e-1540.96Ubiquitin-conjugating enzyme E2 4 OS=Candida albic... [more]
UBC9A_DANRE9.217e-1540.21SUMO-conjugating enzyme UBC9-A OS=Danio rerio GN=u... [more]
UBE2N_DROME1.173e-1439.76Ubiquitin-conjugating enzyme E2 N OS=Drosophila me... [more]
UBC9_XENTR1.204e-1440.21SUMO-conjugating enzyme UBC9 OS=Xenopus tropicalis... [more]
UBC9_XENLA1.204e-1440.21SUMO-conjugating enzyme UBC9 OS=Xenopus laevis GN=... [more]
UBC9_SPETR1.204e-1440.21SUMO-conjugating enzyme UBC9 OS=Spermophilus tride... [more]
UBC9_RAT1.204e-1440.21SUMO-conjugating enzyme UBC9 OS=Rattus norvegicus ... [more]
UBC9_MOUSE1.204e-1440.21SUMO-conjugating enzyme UBC9 OS=Mus musculus GN=Ub... [more]
UBC9_MESAU1.204e-1440.21SUMO-conjugating enzyme UBC9 OS=Mesocricetus aurat... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-060-H01-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY715966 ID=EY715966; Name=EY715966; organism=Citrus sinensis; type=EST; length=948bp
CTTTTCTCTAGAACTTTCCTCTCTCGTTCTCTCTCTGTAGAACACGACGT
CGCCATGTCAACACCGGCGAAGAAGCGGCTGATGCGGGACTTCAAGCGCC
TCCGGCGAGATCCACCCGCCGGCATCAGCGGTGCCCCTCAAGACAACAAC
ATCATGTTGTGGAACGCCGTTATTTTTGGGCCCGATGATACTCCCTGGGA
CGGAGGTACGTTCAAGTTGACTCTACAATTCACAGAGGATTATCCAAATA
AACCCCCAACAGGTCGTTTCGTCATCCGGATGTTTCATCCCTATATCTAT
GCAGATGGAAGTATTTGTTTGGGATATATTGCAAAATCAGTGGAGTCCTA
TATTTGATGTTGTAGCTATACTGGACCTGTATTCGGTCGCTGGTGTGGGA
TCCGGGTGAGATTTTTCCTGCTCACTCCGAAGACGACTCGGGTGTTGCTT
GATGCTAAGCGAAATAATAGACCAAAGAGTCGGGAAATTCTGGAACAAAA
ATAGATAAGCGGAGTATAAGGCAGAGACAGAAGGGGGGGTGCGCCGCGCA
GAGTAATGAGGAAATGGTCGGGGGGAGACTTTGTGTTACTTCAACGGGCG
GCCCTCACAACGGCCCGAGAGAGGGGGGGTGGGGAATTATGTTCGGTAGG
TGTGGGGGGTTCGGAGGGGGAGGGGCGCGGGGGGTCGCGAGACGCGGGAG
AAAACGAGAACAGGGGGGGAGGGGAGGAAGACGGGATAGAACATAGCGGG
GGGGGAAGTATAGGCCGGGAGGGAGGGAAGGATAAAGGGGAGGTGGGAGG
GGGAAGGGAGGATAGAAGAGGGGGAAGCGGAGAAGGAGAAGAAGGAGGAG
GGGAGGGGAGANAGGGGGGAGGGGATGAGTGGGACGGAGGGATGGAGGAG
GGAGGAGAGAGGGAGAGAGAGGGTGATGGAAGGAAAGCGAGGTGCCTG
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