EY715966

Overview
NameEY715966
Unique NameEY715966
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length948
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY715966_ssr767 microsatellite EY715966_ssr767:767..778. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY715966 vs. ExPASy Swiss-Prot
Match: UBC9_HUMAN (SUMO-conjugating enzyme UBC9 OS=Homo sapiens GN=UBE2I PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.204e-14
Identity = 39/97 (40.21%), Postives = 53/97 (54.64%), Query Frame = 1
Query:   55 MSTPAKKRLMRDFKRLRRDPPAGISGAPQDN-----NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTGRFVIRMFHPYIYADGSICLGYI 330
            MS  A  RL ++ K  R+D P G    P  N     N+M W   I G   TPW+GG FKL + F +DYP+ PP  +F   +FHP +Y  G++CL  +
Sbjct:    1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSIL 97          
BLAST of EY715966 vs. ExPASy Swiss-Prot
Match: UBC9_CHICK (SUMO-conjugating enzyme UBC9 OS=Gallus gallus GN=UBE2I PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.204e-14
Identity = 39/97 (40.21%), Postives = 53/97 (54.64%), Query Frame = 1
Query:   55 MSTPAKKRLMRDFKRLRRDPPAGISGAPQDN-----NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTGRFVIRMFHPYIYADGSICLGYI 330
            MS  A  RL ++ K  R+D P G    P  N     N+M W   I G   TPW+GG FKL + F +DYP+ PP  +F   +FHP +Y  G++CL  +
Sbjct:    1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSIL 97          
BLAST of EY715966 vs. ExPASy Swiss-Prot
Match: UBC9B_DANRE (SUMO-conjugating enzyme UBC9-B OS=Danio rerio GN=ube2ib PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.204e-14
Identity = 39/97 (40.21%), Postives = 53/97 (54.64%), Query Frame = 1
Query:   55 MSTPAKKRLMRDFKRLRRDPPAGISGAPQDN-----NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTGRFVIRMFHPYIYADGSICLGYI 330
            MS  A  RL ++ K  R+D P G    P  N     N+M W   I G   TPW+GG FKL + F +DYP+ PP  +F   +FHP +Y  G++CL  +
Sbjct:    1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSIL 97          
BLAST of EY715966 vs. ExPASy Swiss-Prot
Match: UBC9_SCHPO (SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyces pombe GN=hus5 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.574e-14
Identity = 38/97 (39.18%), Postives = 54/97 (55.67%), Query Frame = 1
Query:   55 MSTPAKKRLMRDFKRLRRDPPAGISGAPQDNN-----IMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTGRFVIRMFHPYIYADGSICLGYI 330
            MS+  K RL  + K+ RRD P G    P  ++     +M W   I G   T W+GG +KLT+ F E+YP +PP  RF   +FHP +Y  G++CL  +
Sbjct:    1 MSSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSIL 97          
BLAST of EY715966 vs. ExPASy Swiss-Prot
Match: UBC7_ARATH (Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis thaliana GN=UBC7 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.974e-14
Identity = 36/93 (38.71%), Postives = 53/93 (56.99%), Query Frame = 1
Query:   55 MSTPAKKRLMRDFKRLRRDPPAGIS-GAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTGRFVIRMFHPYIYADGSICLGYI 330
            M++ A   L +  K L + P  G S G   + NI  W+  I GP DT ++GG F   + F ++YPN PPT RF   M+HP +Y+DG +C+  +
Sbjct:    1 MASQASLLLQKQLKDLCKHPVDGFSAGLVDEKNIFEWSVTIIGPPDTLYEGGFFNAIMTFPQNYPNSPPTVRFTSDMWHPNVYSDGRVCISIL 93          
BLAST of EY715966 vs. ExPASy Swiss-Prot
Match: UBC35_ARATH (Ubiquitin carrier protein E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.523e-14
Identity = 33/83 (39.76%), Postives = 54/83 (65.06%), Query Frame = 1
Query:   73 KRLMRDFKRLRRDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTGRFVIRMFHPYIYADGSICL 321
            +R++++ +RL  +P  GIS +P ++N+  +N +I GP  +P++GG FKL L   E+YP   P  RF+ +++HP I   G ICL
Sbjct:    8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICL 90          

HSP 2 Score: 21.9422 bits (45), Expect = 9.523e-14
Identity = 7/17 (41.18%), Postives = 12/17 (70.59%), Query Frame = 2
Query:  323 DILQNQWSPIFDVVAIL 373
            DIL+++WSP   +  +L
Sbjct:   91 DILKDKWSPALQIRTVL 107          
BLAST of EY715966 vs. ExPASy Swiss-Prot
Match: UBC15_SCHPO (Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccharomyces pombe GN=ubc15 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.019e-13
Identity = 32/92 (34.78%), Postives = 56/92 (60.87%), Query Frame = 1
Query:   58 STPAKKRLMRDFKRLRRDPPAGIS-GAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTGRFVIRMFHPYIYADGSICLGYI 330
            S+ +++ L +  K ++++PP G S G   D +I  W  +I GP+DT ++GG F  TL F +DYP  PP  +F   ++HP ++ +G +C+  +
Sbjct:    3 SSASEQLLRKQLKEIQKNPPQGFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLSFPQDYPLMPPKMKFTTEIWHPNVHPNGEVCISIL 94          
BLAST of EY715966 vs. ExPASy Swiss-Prot
Match: UBC36_ARATH (Ubiquitin carrier protein E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.237e-13
Identity = 33/83 (39.76%), Postives = 53/83 (63.86%), Query Frame = 1
Query:   73 KRLMRDFKRLRRDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTGRFVIRMFHPYIYADGSICL 321
            +R++++ +RL  +P  GIS +P + N+  +N +I GP  +P++GG FKL L   E+YP   P  RF+ +++HP I   G ICL
Sbjct:    8 RRIIKETQRLLSEPAPGISASPSEENMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICL 90          

HSP 2 Score: 21.9422 bits (45), Expect = 1.237e-13
Identity = 7/17 (41.18%), Postives = 12/17 (70.59%), Query Frame = 2
Query:  323 DILQNQWSPIFDVVAIL 373
            DIL+++WSP   +  +L
Sbjct:   91 DILKDKWSPALQIRTVL 107          
BLAST of EY715966 vs. ExPASy Swiss-Prot
Match: UBE2N_MACFA (Ubiquitin-conjugating enzyme E2 N OS=Macaca fascicularis GN=UBE2N PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.738e-13
Identity = 43/143 (30.07%), Postives = 74/143 (51.75%), Query Frame = 1
Query:   73 KRLMRDFKRLRRDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTGRFVIRMFHPYIYADGSICLGYIAKSVESYI*CCSYTGPVFGRWC-GIRVRFFLLTPKTTRVLLDAKRNNRPKSREILEQ 498
            +R++++ +RL  +P  GI   P ++N   ++ VI GP D+P++GGTFKL L   E+YP   P  RF+ +++HP +   G ICL  +                   +W   +++R  LL   + + LL A   + P + ++ EQ
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKSGRICLDILK-----------------DKWSPALQIRTVLL---SIQALLSAPNPDDPLANDVAEQ 128          
BLAST of EY715966 vs. ExPASy Swiss-Prot
Match: UBC9_PAGMA (SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ube2i PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.738e-13
Identity = 38/97 (39.18%), Postives = 53/97 (54.64%), Query Frame = 1
Query:   55 MSTPAKKRLMRDFKRLRRDPPAGISGAPQDN-----NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTGRFVIRMFHPYIYADGSICLGYI 330
            MS  A  RL ++ K  R+D P G+   P  N     N+M     I G   TPW+GG FKL + F +DYP+ PP  +F   +FHP +Y  G++CL  +
Sbjct:    1 MSGIALSRLAQERKAWRKDHPLGLVAVPTKNPDGTMNLMNGECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSIL 97          
The following BLAST results are available for this feature:
BLAST of EY715966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
UBC9_HUMAN1.204e-1440.21SUMO-conjugating enzyme UBC9 OS=Homo sapiens GN=UB... [more]
UBC9_CHICK1.204e-1440.21SUMO-conjugating enzyme UBC9 OS=Gallus gallus GN=U... [more]
UBC9B_DANRE1.204e-1440.21SUMO-conjugating enzyme UBC9-B OS=Danio rerio GN=u... [more]
UBC9_SCHPO4.574e-1439.18SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyce... [more]
UBC7_ARATH5.974e-1438.71Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis t... [more]
UBC35_ARATH9.523e-1439.76Ubiquitin carrier protein E2 35 OS=Arabidopsis tha... [more]
UBC15_SCHPO1.019e-1334.78Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccha... [more]
UBC36_ARATH1.237e-1339.76Ubiquitin carrier protein E2 36 OS=Arabidopsis tha... [more]
UBE2N_MACFA1.738e-1330.07Ubiquitin-conjugating enzyme E2 N OS=Macaca fascic... [more]
UBC9_PAGMA1.738e-1339.18SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ub... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-060-H01-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY715966 ID=EY715966; Name=EY715966; organism=Citrus sinensis; type=EST; length=948bp
CTTTTCTCTAGAACTTTCCTCTCTCGTTCTCTCTCTGTAGAACACGACGT
CGCCATGTCAACACCGGCGAAGAAGCGGCTGATGCGGGACTTCAAGCGCC
TCCGGCGAGATCCACCCGCCGGCATCAGCGGTGCCCCTCAAGACAACAAC
ATCATGTTGTGGAACGCCGTTATTTTTGGGCCCGATGATACTCCCTGGGA
CGGAGGTACGTTCAAGTTGACTCTACAATTCACAGAGGATTATCCAAATA
AACCCCCAACAGGTCGTTTCGTCATCCGGATGTTTCATCCCTATATCTAT
GCAGATGGAAGTATTTGTTTGGGATATATTGCAAAATCAGTGGAGTCCTA
TATTTGATGTTGTAGCTATACTGGACCTGTATTCGGTCGCTGGTGTGGGA
TCCGGGTGAGATTTTTCCTGCTCACTCCGAAGACGACTCGGGTGTTGCTT
GATGCTAAGCGAAATAATAGACCAAAGAGTCGGGAAATTCTGGAACAAAA
ATAGATAAGCGGAGTATAAGGCAGAGACAGAAGGGGGGGTGCGCCGCGCA
GAGTAATGAGGAAATGGTCGGGGGGAGACTTTGTGTTACTTCAACGGGCG
GCCCTCACAACGGCCCGAGAGAGGGGGGGTGGGGAATTATGTTCGGTAGG
TGTGGGGGGTTCGGAGGGGGAGGGGCGCGGGGGGTCGCGAGACGCGGGAG
AAAACGAGAACAGGGGGGGAGGGGAGGAAGACGGGATAGAACATAGCGGG
GGGGGAAGTATAGGCCGGGAGGGAGGGAAGGATAAAGGGGAGGTGGGAGG
GGGAAGGGAGGATAGAAGAGGGGGAAGCGGAGAAGGAGAAGAAGGAGGAG
GGGAGGGGAGANAGGGGGGAGGGGATGAGTGGGACGGAGGGATGGAGGAG
GGAGGAGAGAGGGAGAGAGAGGGTGATGGAAGGAAAGCGAGGTGCCTG
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