EY715966

Overview
NameEY715966
Unique NameEY715966
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length948
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY715966_ssr767 microsatellite EY715966_ssr767:767..778. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY715966 vs. ExPASy Swiss-Prot
Match: UB2R2_RABIT (Ubiquitin-conjugating enzyme E2 R2 OS=Oryctolagus cuniculus GN=UBE2R2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.270e-13
Identity = 36/96 (37.50%), Postives = 57/96 (59.38%), Query Frame = 1
Query:   61 TPAKKRLMRDFKRLRRDPPAGISGAPQD-NNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTGRFVIRMFHPYIYADGSICLGYIAKSVE 345
            T ++K LM + K L+ +P  G      D +++  W   IFGP +T ++GG FK  ++F  DYP  PPT RF+ +M+HP IY +G +C+  +   V+
Sbjct:    7 TSSQKALMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVD 102          
BLAST of EY715966 vs. ExPASy Swiss-Prot
Match: UB2R2_MOUSE (Ubiquitin-conjugating enzyme E2 R2 OS=Mus musculus GN=Ube2r2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.270e-13
Identity = 36/96 (37.50%), Postives = 57/96 (59.38%), Query Frame = 1
Query:   61 TPAKKRLMRDFKRLRRDPPAGISGAPQD-NNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTGRFVIRMFHPYIYADGSICLGYIAKSVE 345
            T ++K LM + K L+ +P  G      D +++  W   IFGP +T ++GG FK  ++F  DYP  PPT RF+ +M+HP IY +G +C+  +   V+
Sbjct:    7 TSSQKALMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVD 102          
BLAST of EY715966 vs. ExPASy Swiss-Prot
Match: UB2R2_HUMAN (Ubiquitin-conjugating enzyme E2 R2 OS=Homo sapiens GN=UBE2R2 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.270e-13
Identity = 36/96 (37.50%), Postives = 57/96 (59.38%), Query Frame = 1
Query:   61 TPAKKRLMRDFKRLRRDPPAGISGAPQD-NNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTGRFVIRMFHPYIYADGSICLGYIAKSVE 345
            T ++K LM + K L+ +P  G      D +++  W   IFGP +T ++GG FK  ++F  DYP  PPT RF+ +M+HP IY +G +C+  +   V+
Sbjct:    7 TSSQKALMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVD 102          
BLAST of EY715966 vs. ExPASy Swiss-Prot
Match: UBE2N_DICDI (Probable ubiquitin-conjugating enzyme E2 N OS=Dictyostelium discoideum GN=ube2n PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 4.580e-13
Identity = 34/83 (40.96%), Postives = 50/83 (60.24%), Query Frame = 1
Query:   73 KRLMRDFKRLRRDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTGRFVIRMFHPYIYADGSICL 321
            KR++++ +RL  +P  GIS  P  +N   +   I GP D+P++GG F L L  T+DYP   P  RF+ +++HP I   G ICL
Sbjct:    6 KRIIKETQRLMTEPAPGISATPATDNFRYFKVAISGPLDSPFEGGVFNLELFLTDDYPMSAPKVRFLTKIYHPNIDKLGRICL 88          

HSP 2 Score: 21.9422 bits (45), Expect = 4.580e-13
Identity = 7/17 (41.18%), Postives = 12/17 (70.59%), Query Frame = 2
Query:  323 DILQNQWSPIFDVVAIL 373
            DIL+++WSP   +  +L
Sbjct:   89 DILKDKWSPALQIRTVL 105          
BLAST of EY715966 vs. ExPASy Swiss-Prot
Match: UBE2N_RAT (Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.057e-13
Identity = 43/143 (30.07%), Postives = 74/143 (51.75%), Query Frame = 1
Query:   73 KRLMRDFKRLRRDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTGRFVIRMFHPYIYADGSICLGYIAKSVESYI*CCSYTGPVFGRWC-GIRVRFFLLTPKTTRVLLDAKRNNRPKSREILEQ 498
            +R++++ +RL  +P  GI   P ++N   ++ VI GP D+P++GGTFKL L   E+YP   P  RF+ +++HP +   G ICL  +                   +W   +++R  LL   + + LL A   + P + ++ EQ
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILK-----------------DKWSPALQIRTVLL---SIQALLSAPNPDDPLANDVAEQ 128          
BLAST of EY715966 vs. ExPASy Swiss-Prot
Match: UBE2N_PONAB (Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii GN=UBE2N PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.057e-13
Identity = 43/143 (30.07%), Postives = 74/143 (51.75%), Query Frame = 1
Query:   73 KRLMRDFKRLRRDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTGRFVIRMFHPYIYADGSICLGYIAKSVESYI*CCSYTGPVFGRWC-GIRVRFFLLTPKTTRVLLDAKRNNRPKSREILEQ 498
            +R++++ +RL  +P  GI   P ++N   ++ VI GP D+P++GGTFKL L   E+YP   P  RF+ +++HP +   G ICL  +                   +W   +++R  LL   + + LL A   + P + ++ EQ
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILK-----------------DKWSPALQIRTVLL---SIQALLSAPNPDDPLANDVAEQ 128          
BLAST of EY715966 vs. ExPASy Swiss-Prot
Match: UBE2N_MOUSE (Ubiquitin-conjugating enzyme E2 N OS=Mus musculus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.057e-13
Identity = 43/143 (30.07%), Postives = 74/143 (51.75%), Query Frame = 1
Query:   73 KRLMRDFKRLRRDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTGRFVIRMFHPYIYADGSICLGYIAKSVESYI*CCSYTGPVFGRWC-GIRVRFFLLTPKTTRVLLDAKRNNRPKSREILEQ 498
            +R++++ +RL  +P  GI   P ++N   ++ VI GP D+P++GGTFKL L   E+YP   P  RF+ +++HP +   G ICL  +                   +W   +++R  LL   + + LL A   + P + ++ EQ
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILK-----------------DKWSPALQIRTVLL---SIQALLSAPNPDDPLANDVAEQ 128          
BLAST of EY715966 vs. ExPASy Swiss-Prot
Match: UBE2N_HUMAN (Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens GN=UBE2N PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.057e-13
Identity = 43/143 (30.07%), Postives = 74/143 (51.75%), Query Frame = 1
Query:   73 KRLMRDFKRLRRDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTGRFVIRMFHPYIYADGSICLGYIAKSVESYI*CCSYTGPVFGRWC-GIRVRFFLLTPKTTRVLLDAKRNNRPKSREILEQ 498
            +R++++ +RL  +P  GI   P ++N   ++ VI GP D+P++GGTFKL L   E+YP   P  RF+ +++HP +   G ICL  +                   +W   +++R  LL   + + LL A   + P + ++ EQ
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILK-----------------DKWSPALQIRTVLL---SIQALLSAPNPDDPLANDVAEQ 128          
BLAST of EY715966 vs. ExPASy Swiss-Prot
Match: UBE2N_BOVIN (Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN=UBE2N PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.057e-13
Identity = 43/143 (30.07%), Postives = 74/143 (51.75%), Query Frame = 1
Query:   73 KRLMRDFKRLRRDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTGRFVIRMFHPYIYADGSICLGYIAKSVESYI*CCSYTGPVFGRWC-GIRVRFFLLTPKTTRVLLDAKRNNRPKSREILEQ 498
            +R++++ +RL  +P  GI   P ++N   ++ VI GP D+P++GGTFKL L   E+YP   P  RF+ +++HP +   G ICL  +                   +W   +++R  LL   + + LL A   + P + ++ EQ
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILK-----------------DKWSPALQIRTVLL---SIQALLSAPNPDDPLANDVAEQ 128          
BLAST of EY715966 vs. ExPASy Swiss-Prot
Match: UBC13_SCHPO (Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccharomyces pombe GN=ubc13 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.626e-13
Identity = 32/88 (36.36%), Postives = 53/88 (60.23%), Query Frame = 1
Query:   73 KRLMRDFKRLRRDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTGRFVIRMFHPYIYADGSICLGYIAK 336
            KR++++ + L RDPP GI  AP ++N+  +   + GP  + ++GG F L L   ++YP  PP  RF+ +++HP +   G ICL  + K
Sbjct:    5 KRIIKEIETLTRDPPPGIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMMPPNVRFLTKIYHPNVDKLGRICLSTLKK 92          
The following BLAST results are available for this feature:
BLAST of EY715966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
UB2R2_RABIT2.270e-1337.50Ubiquitin-conjugating enzyme E2 R2 OS=Oryctolagus ... [more]
UB2R2_MOUSE2.270e-1337.50Ubiquitin-conjugating enzyme E2 R2 OS=Mus musculus... [more]
UB2R2_HUMAN2.270e-1337.50Ubiquitin-conjugating enzyme E2 R2 OS=Homo sapiens... [more]
UBE2N_DICDI4.580e-1340.96Probable ubiquitin-conjugating enzyme E2 N OS=Dict... [more]
UBE2N_RAT5.057e-1330.07Ubiquitin-conjugating enzyme E2 N OS=Rattus norveg... [more]
UBE2N_PONAB5.057e-1330.07Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii ... [more]
UBE2N_MOUSE5.057e-1330.07Ubiquitin-conjugating enzyme E2 N OS=Mus musculus ... [more]
UBE2N_HUMAN5.057e-1330.07Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens ... [more]
UBE2N_BOVIN5.057e-1330.07Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN... [more]
UBC13_SCHPO8.626e-1336.36Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccha... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-060-H01-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY715966 ID=EY715966; Name=EY715966; organism=Citrus sinensis; type=EST; length=948bp
CTTTTCTCTAGAACTTTCCTCTCTCGTTCTCTCTCTGTAGAACACGACGT
CGCCATGTCAACACCGGCGAAGAAGCGGCTGATGCGGGACTTCAAGCGCC
TCCGGCGAGATCCACCCGCCGGCATCAGCGGTGCCCCTCAAGACAACAAC
ATCATGTTGTGGAACGCCGTTATTTTTGGGCCCGATGATACTCCCTGGGA
CGGAGGTACGTTCAAGTTGACTCTACAATTCACAGAGGATTATCCAAATA
AACCCCCAACAGGTCGTTTCGTCATCCGGATGTTTCATCCCTATATCTAT
GCAGATGGAAGTATTTGTTTGGGATATATTGCAAAATCAGTGGAGTCCTA
TATTTGATGTTGTAGCTATACTGGACCTGTATTCGGTCGCTGGTGTGGGA
TCCGGGTGAGATTTTTCCTGCTCACTCCGAAGACGACTCGGGTGTTGCTT
GATGCTAAGCGAAATAATAGACCAAAGAGTCGGGAAATTCTGGAACAAAA
ATAGATAAGCGGAGTATAAGGCAGAGACAGAAGGGGGGGTGCGCCGCGCA
GAGTAATGAGGAAATGGTCGGGGGGAGACTTTGTGTTACTTCAACGGGCG
GCCCTCACAACGGCCCGAGAGAGGGGGGGTGGGGAATTATGTTCGGTAGG
TGTGGGGGGTTCGGAGGGGGAGGGGCGCGGGGGGTCGCGAGACGCGGGAG
AAAACGAGAACAGGGGGGGAGGGGAGGAAGACGGGATAGAACATAGCGGG
GGGGGAAGTATAGGCCGGGAGGGAGGGAAGGATAAAGGGGAGGTGGGAGG
GGGAAGGGAGGATAGAAGAGGGGGAAGCGGAGAAGGAGAAGAAGGAGGAG
GGGAGGGGAGANAGGGGGGAGGGGATGAGTGGGACGGAGGGATGGAGGAG
GGAGGAGAGAGGGAGAGAGAGGGTGATGGAAGGAAAGCGAGGTGCCTG
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