FC871312

Overview
NameFC871312
Unique NameFC871312
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871312 vs. ExPASy Swiss-Prot
Match: ATL1M_ARATH (RING-H2 finger protein ATL1M OS=Arabidopsis thaliana GN=ATL1M PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.765e-11
Identity = 27/46 (58.70%), Postives = 30/46 (65.22%), Query Frame = 1
Query:  361 GTECPVCLSAFADGEVVRQLSACKHSFHASCIDMWLKSHSNCPICR 498
            G EC VCLS   DG+  R L  C H FH  CIDMW +SHS CP+CR
Sbjct:  117 GLECAVCLSDLVDGDKARVLPRCNHGFHVDCIDMWFQSHSTCPLCR 162          
BLAST of FC871312 vs. ExPASy Swiss-Prot
Match: ATL1J_ARATH (RING-H2 finger protein ATL1J OS=Arabidopsis thaliana GN=ATL1J PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.765e-11
Identity = 31/75 (41.33%), Postives = 42/75 (56.00%), Query Frame = 1
Query:  289 SKANEGTE-----MASGLKYRKEAHVKDVGTECPVCLSAFADGEVVRQLSACKHSFHASCIDMWLKSHSNCPICR 498
            S +N+G +     M   + Y +E ++  +G EC +CLS F  GE +R L  C H FH  CID WL+ H  CP CR
Sbjct:  103 SSSNKGIKKKALRMFPVVSYSREMNLPGIGEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQHHLTCPKCR 177          
BLAST of FC871312 vs. ExPASy Swiss-Prot
Match: ATL1H_ARATH (RING-H2 finger protein ATL1H OS=Arabidopsis thaliana GN=ATL1H PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.765e-11
Identity = 26/46 (56.52%), Postives = 33/46 (71.74%), Query Frame = 1
Query:  361 GTECPVCLSAFADGEVVRQLSACKHSFHASCIDMWLKSHSNCPICR 498
            G EC +CL+ F D E +R +  C H+FHASCID+WL S S CP+CR
Sbjct:  125 GVECAICLNEFEDEETLRLMPPCSHAFHASCIDVWLSSRSTCPVCR 170          
BLAST of FC871312 vs. ExPASy Swiss-Prot
Match: ATL1P_ARATH (RING-H2 finger protein ATL1P OS=Arabidopsis thaliana GN=ATL1P PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.306e-11
Identity = 27/46 (58.70%), Postives = 30/46 (65.22%), Query Frame = 1
Query:  361 GTECPVCLSAFADGEVVRQLSACKHSFHASCIDMWLKSHSNCPICR 498
            G EC +CLS    G+  R L  C HSFH  CIDMW +SHS CPICR
Sbjct:  124 GLECSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPICR 169          
BLAST of FC871312 vs. ExPASy Swiss-Prot
Match: ATL1L_ARATH (RING-H2 finger protein ATL1L OS=Arabidopsis thaliana GN=ATL1L PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.306e-11
Identity = 33/73 (45.21%), Postives = 41/73 (56.16%), Query Frame = 1
Query:  280 GVVSKANEGTEMASGLKYRKEAHVKDVGTECPVCLSAFADGEVVRQLSACKHSFHASCIDMWLKSHSNCPICR 498
            GV  KA +  +  S   Y  E ++  + TEC +CLS F   E V+ L  C H FH  CID WL SHS+CP CR
Sbjct:  104 GVKRKALKSFQTVS---YSTELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDKWLSSHSSCPTCR 173          
BLAST of FC871312 vs. ExPASy Swiss-Prot
Match: ATL1F_ARATH (RING-H2 finger protein ATL1F OS=Arabidopsis thaliana GN=ATL1F PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.306e-11
Identity = 26/51 (50.98%), Postives = 35/51 (68.63%), Query Frame = 1
Query:  349 VKDVGTE-CPVCLSAFADGEVVRQLSACKHSFHASCIDMWLKSHSNCPICR 498
            VKD GT+ C +CL+ F D + +R +S C HSFH  CID+W + H  CP+CR
Sbjct:  146 VKDHGTDQCSICLTEFMDDDTIRLISTCNHSFHTICIDLWFEGHKTCPVCR 196          
BLAST of FC871312 vs. ExPASy Swiss-Prot
Match: ATL5B_ARATH (RING-H2 finger protein ATL5B OS=Arabidopsis thaliana GN=ATL5B PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.011e-11
Identity = 28/50 (56.00%), Postives = 32/50 (64.00%), Query Frame = 1
Query:  349 VKDVGTECPVCLSAFADGEVVRQLSACKHSFHASCIDMWLKSHSNCPICR 498
            +K   TEC +CL  F +GE VR L  C H FH  CID WL SHS+CP CR
Sbjct:  106 LKMKATECLICLGDFVEGETVRVLPKCNHGFHVKCIDTWLLSHSSCPTCR 155          
BLAST of FC871312 vs. ExPASy Swiss-Prot
Match: ATL4C_ARATH (Putative RING-H2 finger protein ATL4C OS=Arabidopsis thaliana GN=ATL4C PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.011e-11
Identity = 26/46 (56.52%), Postives = 33/46 (71.74%), Query Frame = 1
Query:  361 GTECPVCLSAFADGEVVRQLSACKHSFHASCIDMWLKSHSNCPICR 498
            G EC +CLS F D E +R +  C H+FHA+CID+WL S S CP+CR
Sbjct:  120 GVECAICLSEFEDQETLRWMPPCSHTFHANCIDVWLSSWSTCPVCR 165          
BLAST of FC871312 vs. ExPASy Swiss-Prot
Match: ATL2A_ARATH (RING-H2 finger protein ATL2A OS=Arabidopsis thaliana GN=ATL2A PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.011e-11
Identity = 28/45 (62.22%), Postives = 32/45 (71.11%), Query Frame = 1
Query:  364 TECPVCLSAFADGEVVRQLSACKHSFHASCIDMWLKSHSNCPICR 498
            TEC +CL+ FADGE +R L  C HSFH  CID WL S S+CP CR
Sbjct:  100 TECAICLTDFADGEEIRVLPLCGHSFHVECIDKWLVSRSSCPSCR 144          
BLAST of FC871312 vs. ExPASy Swiss-Prot
Match: ATL1I_ARATH (RING-H2 finger protein ATL1I OS=Arabidopsis thaliana GN=ATL1I PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.011e-11
Identity = 27/58 (46.55%), Postives = 34/58 (58.62%), Query Frame = 1
Query:  325 LKYRKEAHVKDVGTECPVCLSAFADGEVVRQLSACKHSFHASCIDMWLKSHSNCPICR 498
            + Y  E ++  +G EC +CLS F  GE +R L  C H FH  CID WL+ H  CP CR
Sbjct:  121 VSYSPEMNLPGLGEECVICLSDFVSGEQIRMLPKCHHGFHVRCIDKWLQQHLTCPKCR 178          
The following BLAST results are available for this feature:
BLAST of FC871312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
ATL1M_ARATH1.765e-1158.70RING-H2 finger protein ATL1M OS=Arabidopsis thalia... [more]
ATL1J_ARATH1.765e-1141.33RING-H2 finger protein ATL1J OS=Arabidopsis thalia... [more]
ATL1H_ARATH1.765e-1156.52RING-H2 finger protein ATL1H OS=Arabidopsis thalia... [more]
ATL1P_ARATH2.306e-1158.70RING-H2 finger protein ATL1P OS=Arabidopsis thalia... [more]
ATL1L_ARATH2.306e-1145.21RING-H2 finger protein ATL1L OS=Arabidopsis thalia... [more]
ATL1F_ARATH2.306e-1150.98RING-H2 finger protein ATL1F OS=Arabidopsis thalia... [more]
ATL5B_ARATH3.011e-1156.00RING-H2 finger protein ATL5B OS=Arabidopsis thalia... [more]
ATL4C_ARATH3.011e-1156.52Putative RING-H2 finger protein ATL4C OS=Arabidops... [more]
ATL2A_ARATH3.011e-1162.22RING-H2 finger protein ATL2A OS=Arabidopsis thalia... [more]
ATL1I_ARATH3.011e-1146.55RING-H2 finger protein ATL1I OS=Arabidopsis thalia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAK2BE11FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2BE11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871312 ID=FC871312; Name=FC871312; organism=Citrus sinensis; type=EST; length=718bp
CCCTCTCTCTCACCTCAATTAAATTCAACACCCCCCCCCCCCCCAAACAT
GGAAAACGCACCCACCATTCTCCGGGAACCGCAGCCGGATTTCCCGCCGT
CGCCCAGCAGCTTCGACCTATCCCCTCTGGAGTTCATCCTCGCCCTCTTA
GCCGTCATCACCATCCCCGCCTTGGTTTACGCTTTCTTCTTCGCCGTCAA
ATGCCCCCCGTGGCCTTTCCGCCGGCGGGAGAGGAGCTTCAGCCGCCGAA
GCTCCGGGGAAAGCGCCGGTGCGGAAAACGGCGTCGTGTCGAAAGCGAAC
GAAGGCACGGAGATGGCATCGGGGCTCAAGTATAGGAAGGAGGCCCATGT
TAAGGACGTGGGCACCGAGTGTCCCGTTTGCTTGTCTGCGTTCGCTGACG
GCGAAGTGGTTCGGCAGCTGAGCGCGTGTAAACACTCTTTCCATGCTTCT
TGCATCGACATGTGGTTGAAATCTCACTCCAATTGTCCGATCTGTCGCGC
TCCCGTTCCCGCCAAGCCCCCTAATAATAACAACGCCGCCCCGCCGCGAG
GTAGAGACGATGATCTTCACCAAGGTTTACCTGATTCCGCCAGCTTAGTC
TGATAGCATAAGTTTTTCGGATAAAGTTCAAATCACGAGAAAATCTCTTA
ATTTATAATATTTAGAAAAAAAATATGAAATGTTTAAAATTGCGAAAGTT
GAGAAATGGAAAGATTTT
back to top