FC871312

Overview
NameFC871312
Unique NameFC871312
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871312 vs. ExPASy Swiss-Prot
Match: ATL4B_ARATH (Putative RING-H2 finger protein ATL4B OS=Arabidopsis thaliana GN=ATL4B PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.933e-11
Identity = 26/46 (56.52%), Postives = 32/46 (69.57%), Query Frame = 1
Query:  361 GTECPVCLSAFADGEVVRQLSACKHSFHASCIDMWLKSHSNCPICR 498
            G EC +CLS F D E +R +  C H+FHA+CID+WL S S CP CR
Sbjct:  120 GVECAICLSEFVDKETLRWMPPCSHTFHANCIDVWLSSQSTCPACR 165          
BLAST of FC871312 vs. ExPASy Swiss-Prot
Match: ATL5C_ARATH (RING-H2 finger protein ATL5C OS=Arabidopsis thaliana GN=ATL5C PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.136e-11
Identity = 26/46 (56.52%), Postives = 32/46 (69.57%), Query Frame = 1
Query:  361 GTECPVCLSAFADGEVVRQLSACKHSFHASCIDMWLKSHSNCPICR 498
            G EC VCL+ F   EV+R L  CKH+FH  C+D WL +HS CP+CR
Sbjct:  143 GLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCR 188          
BLAST of FC871312 vs. ExPASy Swiss-Prot
Match: ATL4G_ARATH (RING-H2 finger protein ATL4G OS=Arabidopsis thaliana GN=ATL4G PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.136e-11
Identity = 27/44 (61.36%), Postives = 31/44 (70.45%), Query Frame = 1
Query:  367 ECPVCLSAFADGEVVRQLSACKHSFHASCIDMWLKSHSNCPICR 498
            EC VCLS F D E  R +  CKH+FH  CIDMW  SHS+CP+CR
Sbjct:   75 ECSVCLSEFKDNESGRVMPNCKHTFHVHCIDMWFHSHSSCPLCR 118          
BLAST of FC871312 vs. ExPASy Swiss-Prot
Match: ATL4L_ARATH (RING-H2 finger protein ATL4L OS=Arabidopsis thaliana GN=ATL4L PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 25/48 (52.08%), Postives = 34/48 (70.83%), Query Frame = 1
Query:  355 DVGTECPVCLSAFADGEVVRQLSACKHSFHASCIDMWLKSHSNCPICR 498
            D  TEC +C++ F++GE +R L  C H+FH +CID WL S S+CP CR
Sbjct:  108 DSSTECAICITEFSEGEEIRILPLCSHAFHVACIDKWLTSRSSCPSCR 155          
BLAST of FC871312 vs. ExPASy Swiss-Prot
Match: ATL1E_ARATH (RING-H2 finger protein ATL1E OS=Arabidopsis thaliana GN=ATL1E PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 26/46 (56.52%), Postives = 31/46 (67.39%), Query Frame = 1
Query:  361 GTECPVCLSAFADGEVVRQLSACKHSFHASCIDMWLKSHSNCPICR 498
            G  CP+CLS +A  E VR +  C H FH  CID WLK HS+CP+CR
Sbjct:  250 GIICPICLSEYASKETVRCMPECDHCFHVQCIDEWLKIHSSCPVCR 295          
The following BLAST results are available for this feature:
BLAST of FC871312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
ATL4B_ARATH3.933e-1156.52Putative RING-H2 finger protein ATL4B OS=Arabidops... [more]
ATL5C_ARATH5.136e-1156.52RING-H2 finger protein ATL5C OS=Arabidopsis thalia... [more]
ATL4G_ARATH5.136e-1161.36RING-H2 finger protein ATL4G OS=Arabidopsis thalia... [more]
ATL4L_ARATH8.761e-1152.08RING-H2 finger protein ATL4L OS=Arabidopsis thalia... [more]
ATL1E_ARATH8.761e-1156.52RING-H2 finger protein ATL1E OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2BE11FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2BE11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871312 ID=FC871312; Name=FC871312; organism=Citrus sinensis; type=EST; length=718bp
CCCTCTCTCTCACCTCAATTAAATTCAACACCCCCCCCCCCCCCAAACAT
GGAAAACGCACCCACCATTCTCCGGGAACCGCAGCCGGATTTCCCGCCGT
CGCCCAGCAGCTTCGACCTATCCCCTCTGGAGTTCATCCTCGCCCTCTTA
GCCGTCATCACCATCCCCGCCTTGGTTTACGCTTTCTTCTTCGCCGTCAA
ATGCCCCCCGTGGCCTTTCCGCCGGCGGGAGAGGAGCTTCAGCCGCCGAA
GCTCCGGGGAAAGCGCCGGTGCGGAAAACGGCGTCGTGTCGAAAGCGAAC
GAAGGCACGGAGATGGCATCGGGGCTCAAGTATAGGAAGGAGGCCCATGT
TAAGGACGTGGGCACCGAGTGTCCCGTTTGCTTGTCTGCGTTCGCTGACG
GCGAAGTGGTTCGGCAGCTGAGCGCGTGTAAACACTCTTTCCATGCTTCT
TGCATCGACATGTGGTTGAAATCTCACTCCAATTGTCCGATCTGTCGCGC
TCCCGTTCCCGCCAAGCCCCCTAATAATAACAACGCCGCCCCGCCGCGAG
GTAGAGACGATGATCTTCACCAAGGTTTACCTGATTCCGCCAGCTTAGTC
TGATAGCATAAGTTTTTCGGATAAAGTTCAAATCACGAGAAAATCTCTTA
ATTTATAATATTTAGAAAAAAAATATGAAATGTTTAAAATTGCGAAAGTT
GAGAAATGGAAAGATTTT
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