FC871310

Overview
NameFC871310
Unique NameFC871310
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC871310 vs. ExPASy Swiss-Prot
Match: H2A_PLADU (Histone H2A OS=Platynereis dumerilii PE=3 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 3.251e-24
Identity = 62/106 (58.49%), Postives = 76/106 (71.70%), Query Frame = 1 
Query:  184 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 498
            +RSSRAGLQFPVGR+HRLL++              Y AA++EYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K +
Sbjct:   16 TRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPV-YLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
[Close]
BLAST of FC871310 vs. ExPASy Swiss-Prot
Match: H2A_CAEEL (Histone H2A OS=Caenorhabditis elegans GN=his-3 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 3.251e-24
Identity = 62/106 (58.49%), Postives = 76/106 (71.70%), Query Frame = 1 
Query:  184 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 498
            SRSSRAGLQFPVGR+HR+L++              Y AA+LEYL AEVLELAGNA++D K  RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I   L+ K +
Sbjct:   18 SRSSRAGLQFPVGRLHRILRKGNYAQRVGAGAPV-YLAAVLEYLAAEVLELAGNAARDNKKTRIAPRHLQLAVRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKKT 122
[Close]
BLAST of FC871310 vs. ExPASy Swiss-Prot
Match: H2A_ASTRU (Histone H2A OS=Asterias rubens PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 3.251e-24
Identity = 62/106 (58.49%), Postives = 75/106 (70.75%), Query Frame = 1 
Query:  184 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 498
            SRSSRAGLQFPVGRVHR L++              Y AA++EYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K +
Sbjct:   16 SRSSRAGLQFPVGRVHRFLRKGNYAERVGAGAPV-YLAAVMEYLAAEILELAGNAARDNKKTRINPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
[Close]
BLAST of FC871310 vs. ExPASy Swiss-Prot
Match: H2A_PODAN (Histone H2A OS=Podospora anserina GN=HTA1 PE=3 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 4.245e-24
Identity = 62/106 (58.49%), Postives = 77/106 (72.64%), Query Frame = 1 
Query:  184 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSS 498
            SRSS+AGL FPVGRVHRLL++              Y AA+LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+IH++L+ K +
Sbjct:   19 SRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPV-YLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKT 123
[Close]
BLAST of FC871310 vs. ExPASy Swiss-Prot
Match: H2A_PHANO (Histone H2A OS=Phaeosphaeria nodorum GN=HTA1 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.245e-24
Identity = 62/106 (58.49%), Postives = 77/106 (72.64%), Query Frame = 1 
Query:  184 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSS 498
            SRSS+AGL FPVGRVHRLL++              Y AA+LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+IH++L+ K +
Sbjct:   19 SRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPV-YLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKT 123
[Close]
BLAST of FC871310 vs. ExPASy Swiss-Prot
Match: H2A_PARAN (Histone H2A, gonadal OS=Parechinus angulosus PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 4.245e-24
Identity = 63/106 (59.43%), Postives = 75/106 (70.75%), Query Frame = 1 
Query:  184 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 498
            SRSSRAGLQFPVGRVHR L++              Y AA+LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K +
Sbjct:   16 SRSSRAGLQFPVGRVHRFLRKGNYANRVGAGAPV-YLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 120
[Close]
BLAST of FC871310 vs. ExPASy Swiss-Prot
Match: H2A_NEUCR (Histone H2A OS=Neurospora crassa GN=hh2a PE=3 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 4.245e-24
Identity = 62/106 (58.49%), Postives = 77/106 (72.64%), Query Frame = 1 
Query:  184 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSS 498
            SRSS+AGL FPVGRVHRLL++              Y AA+LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+IH++L+ K +
Sbjct:   19 SRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPV-YLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKT 123
[Close]
BLAST of FC871310 vs. ExPASy Swiss-Prot
Match: H2A_NEOFI (Histone H2A OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=hta1 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.245e-24
Identity = 62/106 (58.49%), Postives = 77/106 (72.64%), Query Frame = 1 
Query:  184 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSS 498
            SRSS+AGL FPVGRVHRLL++              Y AA+LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+IH++L+ K +
Sbjct:   18 SRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPV-YLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKT 122
[Close]
BLAST of FC871310 vs. ExPASy Swiss-Prot
Match: H2A_MAGGR (Histone H2A OS=Magnaporthe grisea GN=HTA1 PE=2 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 4.245e-24
Identity = 62/106 (58.49%), Postives = 77/106 (72.64%), Query Frame = 1 
Query:  184 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSS 498
            SRSS+AGL FPVGRVHRLL++              Y AA+LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+IH++L+ K +
Sbjct:   19 SRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPV-YLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKT 123
[Close]
BLAST of FC871310 vs. ExPASy Swiss-Prot
Match: H2A_GIBZE (Histone H2A OS=Gibberella zeae GN=HTA1 PE=3 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 4.245e-24
Identity = 62/106 (58.49%), Postives = 77/106 (72.64%), Query Frame = 1 
Query:  184 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSS 498
            SRSS+AGL FPVGRVHRLL++              Y AA+LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+IH++L+ K +
Sbjct:   19 SRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPV-YLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKT 123
The following BLAST results are available for this feature:
BLAST of FC871310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
H2A_PLADU3.251e-2458.49Histone H2A OS=Platynereis dumerilii PE=3 SV=2[more]
H2A_CAEEL3.251e-2458.49Histone H2A OS=Caenorhabditis elegans GN=his-3 PE=... [more]
H2A_ASTRU3.251e-2458.49Histone H2A OS=Asterias rubens PE=1 SV=2[more]
H2A_PODAN4.245e-2458.49Histone H2A OS=Podospora anserina GN=HTA1 PE=3 SV=... [more]
H2A_PHANO4.245e-2458.49Histone H2A OS=Phaeosphaeria nodorum GN=HTA1 PE=3 ... [more]
H2A_PARAN4.245e-2459.43Histone H2A, gonadal OS=Parechinus angulosus PE=1 ... [more]
H2A_NEUCR4.245e-2458.49Histone H2A OS=Neurospora crassa GN=hh2a PE=3 SV=3[more]
H2A_NEOFI4.245e-2458.49Histone H2A OS=Neosartorya fischeri (strain ATCC 1... [more]
H2A_MAGGR4.245e-2458.49Histone H2A OS=Magnaporthe grisea GN=HTA1 PE=2 SV=... [more]
H2A_GIBZE4.245e-2458.49Histone H2A OS=Gibberella zeae GN=HTA1 PE=3 SV=3[more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2BE07FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2BE07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871310 ID=FC871310; Name=FC871310; organism=Citrus sinensis; type=EST; length=737bp
TTTCTTTCTTCTCCTTTAATTTTCATCTCAGAAAAAATTAAAAATAATTA
AATAAATAATTAATTAATTTAAAAGAAGCTGTAGCAATTAGGCGGGAAAA
TGTCGGGCAAAGGAGCCAAAGGACTGATAACAGGCAAAACCACCATTAAC
AACAACAAGGATAAGGACAAGAAGAAACCCGTCTCCCGTTCTTCTCGTGC
TGGTCTTCAGTTCCCAGTGGGAAGGGTCCATCGTCTACTAAAGGAAAGGG
CTGCTGCTCACGGAAGGGTTGGCGCAACAGCTGCTGTTTATACAGCAGCC
ATTTTGGAATATCTAACTGCCGAAGTGTTGGAGTTGGCAGGGAATGCTAG
CAAGGATTTGAAGGTCAAACGTATTACTCCAAGGCATTTGCAGCTTGCTA
TCCGAGGAGATGAAGAACTTGACACTCTCATTAAAGGAACCATAGCCGGT
GGAGGAGTTATTCCTCATATCCACAAGTCCCTCATCAATAAATCCTCCAA
AGAGTAGTTCGTGACACCGTCATCCTCTCGGCTTTGTTTATGTGTGTACT
TTTAGCTGTGCTGAAATATCTAAATGAGAAATGATGCCAAAGATGTGTTA
ATGCTAGGAATCTGCATTCTTCAATCCTCATTTCATGCAGCGACGAATTA
TGGTGCTTGTTTTTTCCCATGTTGGTATTGAACTGTTACTGTTTAATTTT
TAAATAATTCTAAAAAAAAAAAAAAAAAAAAAAAAAA
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