FC871310

Overview
NameFC871310
Unique NameFC871310
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC871310 vs. ExPASy Swiss-Prot
Match: H2AV_MOUSE (Histone H2A.V OS=Mus musculus GN=H2afv PE=1 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 6.747e-38
Identity = 82/108 (75.93%), Postives = 87/108 (80.56%), Query Frame = 1 
Query:  181 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 504
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
[Close]
BLAST of FC871310 vs. ExPASy Swiss-Prot
Match: H2AV_HUMAN (Histone H2A.V OS=Homo sapiens GN=H2AFV PE=1 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 6.747e-38
Identity = 82/108 (75.93%), Postives = 87/108 (80.56%), Query Frame = 1 
Query:  181 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 504
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
[Close]
BLAST of FC871310 vs. ExPASy Swiss-Prot
Match: H2AV_DROME (Histone H2A.v OS=Drosophila melanogaster GN=His2Av PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 6.747e-38
Identity = 82/107 (76.64%), Postives = 87/107 (81.31%), Query Frame = 1 
Query:  181 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSK 501
            VSRS+RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  +
Sbjct:   18 VSRSARAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKEE 124
[Close]
BLAST of FC871310 vs. ExPASy Swiss-Prot
Match: H2AV_DANRE (Histone H2A.V OS=Danio rerio GN=h2afv PE=2 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 6.747e-38
Identity = 82/108 (75.93%), Postives = 87/108 (80.56%), Query Frame = 1 
Query:  181 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 504
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
[Close]
BLAST of FC871310 vs. ExPASy Swiss-Prot
Match: H2AV_CHICK (Histone H2A.V OS=Gallus gallus GN=H2AFV PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 6.747e-38
Identity = 82/108 (75.93%), Postives = 87/108 (80.56%), Query Frame = 1 
Query:  181 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 504
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
[Close]
BLAST of FC871310 vs. ExPASy Swiss-Prot
Match: H2AV_BOVIN (Histone H2A.V OS=Bos taurus GN=H2AFV PE=2 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 6.747e-38
Identity = 82/108 (75.93%), Postives = 87/108 (80.56%), Query Frame = 1 
Query:  181 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 504
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
[Close]
BLAST of FC871310 vs. ExPASy Swiss-Prot
Match: H2AV_CAEEL (Histone H2A.V OS=Caenorhabditis elegans GN=htz-1 PE=2 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 1.503e-37
Identity = 80/104 (76.92%), Postives = 86/104 (82.69%), Query Frame = 1 
Query:  181 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 492
            VSRS+RAGLQFPVGR+HR LK+              Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHL LAIRGDEELDTLIK TIAGGGVIPHIH+ L+NK
Sbjct:   20 VSRSARAGLQFPVGRIHRFLKQRTTSSGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLHLAIRGDEELDTLIKATIAGGGVIPHIHRYLMNK 123
[Close]
BLAST of FC871310 vs. ExPASy Swiss-Prot
Match: H2AV_RABIT (Histone H2A.V OS=Oryctolagus cuniculus GN=H2AFV PE=2 SV=3)

HSP 1 Score: 155.992 bits (393), Expect = 1.963e-37
Identity = 81/108 (75.00%), Postives = 86/108 (79.63%), Query Frame = 1 
Query:  181 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 504
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGG IPHIHKSLI K  ++
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGAIPHIHKSLIGKKGQQ 125
[Close]
BLAST of FC871310 vs. ExPASy Swiss-Prot
Match: H2AV_TETTH (Histone H2A.Z OS=Tetrahymena thermophila GN=HTA3 PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 4.093e-35
Identity = 77/107 (71.96%), Postives = 82/107 (76.64%), Query Frame = 1 
Query:  178 PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSS 498
            P SRS +AGLQFPVGR+HR LK               Y AAILEYLTAEVLELAGNASKD KV+RITPRHL LAIRGDEELD LIK TIAGGGVIPHIHK+L+ K S
Sbjct:   27 PQSRSYKAGLQFPVGRIHRFLKGRVSAKNRVGATAAVYAAAILEYLTAEVLELAGNASKDFKVRRITPRHLLLAIRGDEELDILIKATIAGGGVIPHIHKALLGKHS 133
[Close]
BLAST of FC871310 vs. ExPASy Swiss-Prot
Match: H2AZ_USTMA (Histone H2A.Z OS=Ustilago maydis GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.118e-35
Identity = 72/107 (67.29%), Postives = 87/107 (81.31%), Query Frame = 1 
Query:  184 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 504
            ++S+RAGLQFPVGR+HR LK               YT+AILEYLTAEVLELAGNASKD+++KRITPRHLQLAIRGDEELD++++ TIAGGGV+PHIHK+LI   SK+
Sbjct:   25 TQSARAGLQFPVGRIHRHLKSRTQNHVRIGAKAAVYTSAILEYLTAEVLELAGNASKDMRLKRITPRHLQLAIRGDEELDSMVRATIAGGGVLPHIHKTLIKAPSKK 131
The following BLAST results are available for this feature:
BLAST of FC871310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
H2AV_MOUSE6.747e-3875.93Histone H2A.V OS=Mus musculus GN=H2afv PE=1 SV=3[more]
H2AV_HUMAN6.747e-3875.93Histone H2A.V OS=Homo sapiens GN=H2AFV PE=1 SV=3[more]
H2AV_DROME6.747e-3876.64Histone H2A.v OS=Drosophila melanogaster GN=His2Av... [more]
H2AV_DANRE6.747e-3875.93Histone H2A.V OS=Danio rerio GN=h2afv PE=2 SV=3[more]
H2AV_CHICK6.747e-3875.93Histone H2A.V OS=Gallus gallus GN=H2AFV PE=1 SV=2[more]
H2AV_BOVIN6.747e-3875.93Histone H2A.V OS=Bos taurus GN=H2AFV PE=2 SV=3[more]
H2AV_CAEEL1.503e-3776.92Histone H2A.V OS=Caenorhabditis elegans GN=htz-1 P... [more]
H2AV_RABIT1.963e-3775.00Histone H2A.V OS=Oryctolagus cuniculus GN=H2AFV PE... [more]
H2AV_TETTH4.093e-3571.96Histone H2A.Z OS=Tetrahymena thermophila GN=HTA3 P... [more]
H2AZ_USTMA9.118e-3567.29Histone H2A.Z OS=Ustilago maydis GN=HTZ1 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2BE07FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2BE07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871310 ID=FC871310; Name=FC871310; organism=Citrus sinensis; type=EST; length=737bp
TTTCTTTCTTCTCCTTTAATTTTCATCTCAGAAAAAATTAAAAATAATTA
AATAAATAATTAATTAATTTAAAAGAAGCTGTAGCAATTAGGCGGGAAAA
TGTCGGGCAAAGGAGCCAAAGGACTGATAACAGGCAAAACCACCATTAAC
AACAACAAGGATAAGGACAAGAAGAAACCCGTCTCCCGTTCTTCTCGTGC
TGGTCTTCAGTTCCCAGTGGGAAGGGTCCATCGTCTACTAAAGGAAAGGG
CTGCTGCTCACGGAAGGGTTGGCGCAACAGCTGCTGTTTATACAGCAGCC
ATTTTGGAATATCTAACTGCCGAAGTGTTGGAGTTGGCAGGGAATGCTAG
CAAGGATTTGAAGGTCAAACGTATTACTCCAAGGCATTTGCAGCTTGCTA
TCCGAGGAGATGAAGAACTTGACACTCTCATTAAAGGAACCATAGCCGGT
GGAGGAGTTATTCCTCATATCCACAAGTCCCTCATCAATAAATCCTCCAA
AGAGTAGTTCGTGACACCGTCATCCTCTCGGCTTTGTTTATGTGTGTACT
TTTAGCTGTGCTGAAATATCTAAATGAGAAATGATGCCAAAGATGTGTTA
ATGCTAGGAATCTGCATTCTTCAATCCTCATTTCATGCAGCGACGAATTA
TGGTGCTTGTTTTTTCCCATGTTGGTATTGAACTGTTACTGTTTAATTTT
TAAATAATTCTAAAAAAAAAAAAAAAAAAAAAAAAAA
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